Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0012759

Physical Location & Seq

Genomic Coordinates Forward (+)

24776375 .. 24776599

Gene Structure 225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1153600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAAAAAATCTATTGAATTAACTGAACAGACAGGTACAAAAGGGATTCAAGTACAAATTGCAGGGCGTATCGACGGAAAAGAAATTGCACGTGTTGAATGGATCCGAGAAGGTAGAGTTCCTCTACAAACCATTCAAGCTAAAATTGATTATTGTTCCTATGCAGTTCGAACTATCTATGGGGTATTAGGCATCAAAATTTGGATATTTGTAGACGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S3_C

Protein Analysis

75

Amino Acids

8.45

Weight (kDa)

7.85

Isoelectric Point (pI)

21.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S3_C	PF00189	1 - 69	1.6e-23	Ribosomal protein S3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28815 ATCG00790 ATCG00800
malus_domestica	MD14G1153600.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118541 RchiOBHm_Chr2g0118571
rosa_laevigata	RLG00000000057 RLG00000000073 RLG00000000179 RLG00000000217 RLG00000037101
rosa_roxburghii	Rroxscaffold_2G00118980 Rroxscaffold_2G00118990 Rroxscaffold_2G00119190
rosa_samantha	Rh1CG032400 Rh1CG032500 Rh4BG101400
rosa_wichuraiana	Rw7G013520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AclWI	GGATC	2 cut(s)	97, 110
AcsI	RAATTY	1 cut(s)	198
AcvI	CACGTG	1 cut(s)	92
AfaI	GTAC	2 cut(s)	37, 54
AflIII	ACRYGT	1 cut(s)	91
AgsI	TTSAA	4 cut(s)	17, 50, 98, 137
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
AlwI	GGATC	2 cut(s)	97, 110
ApoI	RAATTY	1 cut(s)	198
AsuII	TTCGAA	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	102
BbrPI	CACGTG	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	104
BmsI	GCATC	1 cut(s)	201
Bpu14I	TTCGAA	1 cut(s)	169
BsaAI	YACGTR	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	104
BspPI	GGATC	2 cut(s)	97, 110
BspT104I	TTCGAA	1 cut(s)	169
BssMI	GATC	1 cut(s)	102
BstBAI	YACGTR	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	169
BstKTI	GATC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	36, 53
CviJI	RGCY	1 cut(s)	140
CviKI_1	RGCY	1 cut(s)	140
CviQI	GTAC	2 cut(s)	36, 53
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eco72I	CACGTG	1 cut(s)	92
FaiI	YATR	2 cut(s)	162, 180
FblI	GTMKAC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	46
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	3 cut(s)	62, 89, 164
HpySE526I	ACGT	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	102
LpnPI	CCDG	2 cut(s)	18, 48
LweI	GCATC	1 cut(s)	201
MaeII	ACGT	1 cut(s)	91
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MflI	RGATCY	1 cut(s)	102
MluCI	AATT	5 cut(s)	17, 57, 84, 144, 198
MnlI	CCTC	2 cut(s)	132, 211
MseI	TTAA	1 cut(s)	20
NdeII	GATC	1 cut(s)	102
NlaIV	GGNNCC	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	46
PmaCI	CACGTG	1 cut(s)	92
PmlI	CACGTG	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	92
PspCI	CACGTG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	104
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	2 cut(s)	37, 54
RsaNI	GTAC	2 cut(s)	36, 53
SaqAI	TTAA	1 cut(s)	20
Sau3AI	GATC	1 cut(s)	102
SetI	ASST	4 cut(s)	37, 94, 115, 142
SfaNI	GCATC	1 cut(s)	201
SfuI	TTCGAA	1 cut(s)	169
SgeI	CNNG	7 cut(s)	45, 62, 75, 102, 104, 119, 149
Sse9I	AATT	5 cut(s)	17, 57, 84, 144, 198
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	2 cut(s)	72, 169
TasI	AATT	5 cut(s)	17, 57, 84, 144, 198
TatI	WGTACW	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	90
XapI	RAATTY	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.