Rroxscaffold_2G00118990

Belongs to the universal ribosomal protein uL16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012759
Physical Location & Seq
Forward (+)
50818117 .. 50818476
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00118990.1

Sequence Viewer

Length: 360 bp
ATGAAAGGAATGTCTTATCGAGGTAATAGTATTTGCTTTGGTAGATATGCTCTTCAAGCACTTGAACCCGCTTGGATCACGTCTAGACAAATAGAAGCGGGGCGGCGAGCAATGACACGAAATGCACGCCGCGGTGGAAAAATCTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTACAGAAACACGTATGGGTTCGGGGAAAGGATCTCCCGAATATTGGGTAGCTGTTGTTAAACCCGGCAGAATACTTTATGAAATGAGCGGAGTGGCAGAAAATATAGCCAGAAGGGCTATTTCAATAGCGGCATCAAAAATGCCTATACGAACTCAATTCATTCTTTCGGTATAG

Protein Analysis

119

Amino Acids

13.33

Weight (kDa)

11.3

Isoelectric Point (pI)

57.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L16 PF00252 1 - 116 1.7e-46 Ribosomal protein L16p/L10e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 273
AccII CGCG 1 cut(s) 132
AciI CCGC 7 cut(s) 69, 98, 103, 130, 132, 273, 314
AclWI GGATC 2 cut(s) 83, 223
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 228
AflIII ACRYGT 1 cut(s) 194
AgsI TTSAA 3 cut(s) 56, 65, 309
AjiI CACGTC 1 cut(s) 81
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
AlwI GGATC 2 cut(s) 83, 223
AsuC2I CCSGG 1 cut(s) 249
BcnI CCSGG 1 cut(s) 249
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 186
BglI GCCNNNNNGGC 1 cut(s) 299
BisI GCNGC 3 cut(s) 104, 130, 315
BlsI GCNGC 3 cut(s) 105, 131, 316
Bme1390I CCNGG 1 cut(s) 249
BmgBI CACGTC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 249
BsaAI YACGTR 2 cut(s) 152, 197
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 228
Bsp143I GATC 2 cut(s) 75, 215
BspACI CCGC 7 cut(s) 69, 98, 103, 130, 132, 273, 314
BspFNI CGCG 1 cut(s) 132
BspPI GGATC 2 cut(s) 83, 223
BspQI GCTCTTC 1 cut(s) 57
BsrBI CCGCTC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 2 cut(s) 75, 215
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 57
BstBAI YACGTR 2 cut(s) 152, 197
BstC8I GCNNGC 2 cut(s) 108, 127
BstDSI CCRYGG 1 cut(s) 130
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 2 cut(s) 78, 218
BstMBI GATC 2 cut(s) 75, 215
BstMWI GCNNNNNNNGC 2 cut(s) 56, 299
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 186
BstSNI TACGTA 1 cut(s) 152
BstUI CGCG 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BtgI CCRYGG 1 cut(s) 130
BtrI CACGTC 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 108, 127
Cfr42I CCGCGG 1 cut(s) 133
Csp6I GTAC 1 cut(s) 149
CviJI RGCY 3 cut(s) 236, 293, 302
CviKI_1 RGCY 3 cut(s) 236, 293, 302
CviQI GTAC 1 cut(s) 149
DpnI GATC 2 cut(s) 77, 217
DpnII GATC 2 cut(s) 75, 215
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco105I TACGTA 1 cut(s) 152
FaiI YATR 7 cut(s) 48, 155, 200, 264, 290, 332, 358
FauI CCCGC 2 cut(s) 76, 91
Fnu4HI GCNGC 3 cut(s) 104, 130, 315
Fsp4HI GCNGC 3 cut(s) 104, 130, 315
FspBI CTAG 1 cut(s) 84
GluI GCNGC 3 cut(s) 104, 130, 315
HapII CCGG 1 cut(s) 249
HpaII CCGG 1 cut(s) 249
Hpy188III TCNNGA 3 cut(s) 84, 161, 221
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 3 cut(s) 80, 151, 196
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 299
HpySE526I ACGT 3 cut(s) 80, 151, 196
KspI CCGCGG 1 cut(s) 133
Kzo9I GATC 2 cut(s) 75, 215
LguI GCTCTTC 1 cut(s) 57
LpnPI CCDG 5 cut(s) 130, 174, 183, 262, 307
LweI GCATC 1 cut(s) 326
MaeI CTAG 1 cut(s) 84
MaeII ACGT 3 cut(s) 80, 151, 196
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 77, 217
MbiI CCGCTC 1 cut(s) 273
MboI GATC 2 cut(s) 75, 215
MboII GAAGA 1 cut(s) 44
MflI RGATCY 1 cut(s) 215
MluCI AATT 1 cut(s) 341
MnlI CCTC 1 cut(s) 14
MseI TTAA 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 56, 299
NciI CCSGG 1 cut(s) 249
NdeII GATC 2 cut(s) 75, 215
PciSI GCTCTTC 1 cut(s) 57
PkrI GCNGC 3 cut(s) 105, 131, 316
Ppu21I YACGTR 2 cut(s) 152, 197
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SacII CCGCGG 1 cut(s) 133
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 3 cut(s) 104, 130, 315
Sau3AI GATC 2 cut(s) 75, 215
ScrFI CCNGG 1 cut(s) 249
SetI ASST 6 cut(s) 25, 83, 154, 187, 199, 238
SfaNI GCATC 1 cut(s) 326
SfcI CTRYAG 1 cut(s) 186
Sfr303I CCGCGG 1 cut(s) 133
SgrBI CCGCGG 1 cut(s) 133
SnaBI TACGTA 1 cut(s) 152
Sse9I AATT 1 cut(s) 341
SsiI CCGC 7 cut(s) 69, 98, 103, 130, 132, 273, 314
SspI AATATT 1 cut(s) 227
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 3 cut(s) 83, 154, 199
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 341
TauI GCSGC 3 cut(s) 106, 132, 317
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TspDTI ATGAA 3 cut(s) 17, 279, 334
XbaI TCTAGA 1 cut(s) 83
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.