Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012759

Physical Location & Seq

Genomic Coordinates Reverse (-)

81189 .. 82652

Gene Structure 1464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCTTAGTCCAAAAAGAACCAGATTTCGTAAACAACATCGAGGAAGACTAAAAGGAATATCTTCTCGTGGGAATCGTATTTGTTTTGGCAGATATGCTCTTCAAACACTTGAACCCGCTTGGATCACATCTAGACAAATAGAAGCAGGGCGACGCGCAATGACACGAAATGTACGACGTGGTGGAAAAATTTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTGCGGAAACGCGTATGGGTTCTGGGAAAGGATCCCCTGAGTATTGGGTAGCTGTGGTTAAACCAGGTAAAATCCTTTATGAAATGGGTGGTGTACCCGAAAATATAGCAAGAAAAGCTATTTCAATAGCGGCATCAAAAATGCCTATAAAAACCCAATTCATTATTTCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0015934 GO:0019843 GO:0022625 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L16

Protein Analysis

135

Amino Acids

15.29

Weight (kDa)

11.62

Isoelectric Point (pI)

52.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L16	PF00252	4 - 132	4.7e-52	Ribosomal protein L16p/L10e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28815 ATCG00790 ATCG00800
malus_domestica	MD14G1153600.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118541 RchiOBHm_Chr2g0118571
rosa_laevigata	RLG00000000057 RLG00000000073 RLG00000000179 RLG00000000217 RLG00000037101
rosa_roxburghii	Rroxscaffold_2G00118980 Rroxscaffold_2G00118990 Rroxscaffold_2G00119190
rosa_samantha	Rh1CG032400 Rh1CG032500 Rh4BG101400
rosa_wichuraiana	Rw7G013520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccII	CGCG	2 cut(s)	156, 244
AciI	CCGC	3 cut(s)	117, 236, 362
AclWI	GGATC	3 cut(s)	131, 258, 271
AcsI	RAATTY	1 cut(s)	189
AfaI	GTAC	3 cut(s)	174, 198, 327
AflIII	ACRYGT	1 cut(s)	242
AgsI	TTSAA	3 cut(s)	104, 113, 357
AjiI	CACGTC	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	2 cut(s)	284, 350
AluI	AGCT	2 cut(s)	284, 350
AlwI	GGATC	3 cut(s)	131, 258, 271
ApoI	RAATTY	1 cut(s)	189
Asp700I	GAANNNNTTC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	158
BamHI	GGATCC	1 cut(s)	263
BauI	CACGAG	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	52
BciT130I	CCWGG	1 cut(s)	297
BfaI	CTAG	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	297
BmgBI	CACGTC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	297
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	218
Bsh1236I	CGCG	2 cut(s)	156, 244
Bsp143I	GATC	2 cut(s)	123, 263
BspACI	CCGC	3 cut(s)	117, 236, 362
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	2 cut(s)	156, 244
BspLI	GGNNCC	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	3 cut(s)	131, 258, 271
BspQI	GCTCTTC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	218
BssMI	GATC	2 cut(s)	123, 263
BssSI	CACGAG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	105
BstBAI	YACGTR	1 cut(s)	200
BstDEI	CTNAG	2 cut(s)	5, 270
BstFNI	CGCG	2 cut(s)	156, 244
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	2 cut(s)	126, 266
BstMBI	GATC	2 cut(s)	123, 263
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	295
BstSNI	TACGTA	1 cut(s)	200
BstUI	CGCG	2 cut(s)	156, 244
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BtrI	CACGTC	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	241
CfoI	GCGC	1 cut(s)	158
CseI	GACGC	1 cut(s)	162
CsiI	ACCWGGT	1 cut(s)	295
Csp6I	GTAC	3 cut(s)	173, 197, 326
CviJI	RGCY	2 cut(s)	284, 350
CviKI_1	RGCY	2 cut(s)	284, 350
CviQI	GTAC	3 cut(s)	173, 197, 326
DdeI	CTNAG	2 cut(s)	5, 270
DpnI	GATC	2 cut(s)	125, 265
DpnII	GATC	2 cut(s)	123, 263
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco105I	TACGTA	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	295
FaiI	YATR	6 cut(s)	96, 203, 248, 312, 338, 380
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	363
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	32, 326
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	2 cut(s)	132, 209
Hpy8I	GTNNAC	2 cut(s)	32, 326
Hpy99I	CGWCG	2 cut(s)	156, 180
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	178, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	2 cut(s)	5, 270
HpySE526I	ACGT	2 cut(s)	178, 199
HspAI	GCGC	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	123, 263
LguI	GCTCTTC	1 cut(s)	105
LpnPI	CCDG	9 cut(s)	34, 132, 222, 231, 240, 246, 282, 282, 309
LweI	GCATC	1 cut(s)	374
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	2 cut(s)	178, 199
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	2 cut(s)	125, 265
MboI	GATC	2 cut(s)	123, 263
MboII	GAAGA	3 cut(s)	54, 57, 92
MflI	RGATCY	1 cut(s)	263
MluCI	AATT	2 cut(s)	189, 389
MluI	ACGCGT	1 cut(s)	242
MnlI	CCTC	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	61
MseI	TTAA	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MvnI	CGCG	2 cut(s)	156, 244
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	2 cut(s)	123, 263
NlaIV	GGNNCC	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	2 cut(s)	73, 172
PdmI	GAANNNNTTC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	364
Ppu21I	YACGTR	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	3 cut(s)	174, 198, 327
RsaNI	GTAC	3 cut(s)	173, 197, 326
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	2 cut(s)	123, 263
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	6 cut(s)	181, 202, 235, 286, 301, 352
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	1 cut(s)	374
SnaBI	TACGTA	1 cut(s)	200
Sse9I	AATT	2 cut(s)	189, 389
SsiI	CCGC	3 cut(s)	117, 236, 362
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	2 cut(s)	181, 202
TaqI	TCGA	1 cut(s)	40
TasI	AATT	2 cut(s)	189, 389
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TspDTI	ATGAA	2 cut(s)	327, 382
XapI	RAATTY	1 cut(s)	189
XbaI	TCTAGA	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	61
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.