Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0012759

Physical Location & Seq

Genomic Coordinates Reverse (-)

819690 .. 821396

Gene Structure 1707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000179

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAAAAGGCTATTGAATTAACTGAGCAGGCAGGTACAAAAGGAATTCAAGTACAAATTGCAGGGCGTATCGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGTAGGGTTCCTCTACAAACCATTCGAGCCAAAATAGATTATTGTTCCTACGCAGTTCGAACTATCTATGGGGTATTAGGTATCAAAATTTGGATATTTGTAGACGAAGAATATGCTCTTCAAGCACTTGAACCCGCTTGGATCACGTCTAGACAAATAGAAGCGGGGCGGCGAGCAATGACACGAAATGCACGCCGCGGTGGAAAAATCTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTACAGAAACACGTATGGGTTCGGGGAAAGGATCTCCCGAATATTGGGTAGCTGTTGTTAAACCCGGCAGAATACTTTATGAAATGAGCGGAGTGGCAGAAAATATAGCCAGAAGGGCTATTTCAATAGCGGCATCAAAAATGCCTATACGAACTCAATTCATTCTTTCGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000313 GO:0000315 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005762 GO:0005840 GO:0008150 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0015934 GO:0019843 GO:0031974 GO:0031976 GO:0031984 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0070013 GO:0070180 GO:0097159 GO:0098798 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14

Protein Analysis

179

Amino Acids

20.06

Weight (kDa)

10.23

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S3_C	PF00189	1 - 69	1.5e-23	Ribosomal protein S3, C-terminal domain
Ribosomal_L16	PF00252	65 - 175	4.2e-42	Ribosomal protein L16p/L10e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28815 ATCG00790 ATCG00800
malus_domestica	MD14G1153600.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118541 RchiOBHm_Chr2g0118571
rosa_laevigata	RLG00000000057 RLG00000000073 RLG00000000179 RLG00000000217 RLG00000037101
rosa_roxburghii	Rroxscaffold_2G00118980 Rroxscaffold_2G00118990 Rroxscaffold_2G00119190
rosa_samantha	Rh1CG032400 Rh1CG032500 Rh4BG101400
rosa_wichuraiana	Rw7G013520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	23
AccBSI	CCGCTC	1 cut(s)	450
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	309
AciI	CCGC	7 cut(s)	246, 275, 280, 307, 309, 450, 491
AclWI	GGATC	3 cut(s)	110, 260, 400
AcsI	RAATTY	2 cut(s)	45, 198
AcvI	CACGTG	1 cut(s)	92
AfaI	GTAC	3 cut(s)	37, 54, 327
AfiI	CCNNNNNNNGG	1 cut(s)	405
AflIII	ACRYGT	2 cut(s)	91, 371
AgsI	TTSAA	5 cut(s)	17, 50, 233, 242, 486
AjiI	CACGTC	1 cut(s)	258
AluBI	AGCT	1 cut(s)	413
AluI	AGCT	1 cut(s)	413
AlwI	GGATC	3 cut(s)	110, 260, 400
ApoI	RAATTY	2 cut(s)	45, 198
AsuC2I	CCSGG	1 cut(s)	426
AsuII	TTCGAA	1 cut(s)	169
BbrPI	CACGTG	1 cut(s)	92
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BcnI	CCSGG	1 cut(s)	426
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	363
BfuAI	ACCTGC	1 cut(s)	23
BglI	GCCNNNNNGGC	1 cut(s)	476
BisI	GCNGC	3 cut(s)	281, 307, 492
BlsI	GCNGC	3 cut(s)	282, 308, 493
Bme1390I	CCNGG	1 cut(s)	426
BmgBI	CACGTC	1 cut(s)	258
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	503
Bpu14I	TTCGAA	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	426
BsaAI	YACGTR	3 cut(s)	92, 329, 374
BsaJI	CCNNGG	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse1I	ACTGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	426
BslI	CCNNNNNNNGG	1 cut(s)	405
Bsp119I	TTCGAA	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	102, 252, 392
BspACI	CCGC	7 cut(s)	246, 275, 280, 307, 309, 450, 491
BspCNI	CTCAG	1 cut(s)	16
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	23
BspPI	GGATC	3 cut(s)	110, 260, 400
BspQI	GCTCTTC	1 cut(s)	234
BspT104I	TTCGAA	1 cut(s)	169
BsrBI	CCGCTC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	3 cut(s)	102, 252, 392
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	234
BstBAI	YACGTR	3 cut(s)	92, 329, 374
BstBI	TTCGAA	1 cut(s)	169
BstC8I	GCNNGC	3 cut(s)	30, 285, 304
BstDEI	CTNAG	1 cut(s)	24
BstDSI	CCRYGG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	309
BstKTI	GATC	3 cut(s)	105, 255, 395
BstMBI	GATC	3 cut(s)	102, 252, 392
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 476
BstSCI	CCNGG	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	363
BstSNI	TACGTA	1 cut(s)	329
BstUI	CGCG	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	392
BtgI	CCRYGG	1 cut(s)	307
BtrI	CACGTC	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	23
Cac8I	GCNNGC	3 cut(s)	30, 285, 304
Cfr42I	CCGCGG	1 cut(s)	310
Csp6I	GTAC	3 cut(s)	36, 53, 326
CviJI	RGCY	5 cut(s)	11, 140, 413, 470, 479
CviKI_1	RGCY	5 cut(s)	11, 140, 413, 470, 479
CviQI	GTAC	3 cut(s)	36, 53, 326
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	3 cut(s)	104, 254, 394
DpnII	GATC	3 cut(s)	102, 252, 392
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco105I	TACGTA	1 cut(s)	329
Eco72I	CACGTG	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	45
FaiI	YATR	8 cut(s)	180, 225, 332, 377, 441, 467, 509, 535
FauI	CCCGC	2 cut(s)	253, 268
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	3 cut(s)	281, 307, 492
Fsp4HI	GCNGC	3 cut(s)	281, 307, 492
FspBI	CTAG	1 cut(s)	261
GluI	GCNGC	3 cut(s)	281, 307, 492
HapII	CCGG	1 cut(s)	426
HpaII	CCGG	1 cut(s)	426
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	3 cut(s)	261, 338, 398
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	104, 468
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	4 cut(s)	91, 257, 328, 373
HpyCH4V	TGCA	3 cut(s)	62, 89, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 476
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	4 cut(s)	91, 257, 328, 373
KspI	CCGCGG	1 cut(s)	310
Kzo9I	GATC	3 cut(s)	102, 252, 392
LguI	GCTCTTC	1 cut(s)	234
LpnPI	CCDG	8 cut(s)	14, 18, 48, 307, 351, 360, 439, 484
LweI	GCATC	1 cut(s)	503
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	4 cut(s)	91, 257, 328, 373
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	3 cut(s)	104, 254, 394
MbiI	CCGCTC	1 cut(s)	450
MboI	GATC	3 cut(s)	102, 252, 392
MboII	GAAGA	2 cut(s)	221, 230
MflI	RGATCY	1 cut(s)	392
MluCI	AATT	6 cut(s)	17, 45, 57, 84, 198, 518
MnlI	CCTC	1 cut(s)	132
MseI	TTAA	2 cut(s)	20, 420
MspA1I	CMGCKG	1 cut(s)	309
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	426
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	233, 476
NciI	CCSGG	1 cut(s)	426
NdeII	GATC	3 cut(s)	102, 252, 392
NlaIV	GGNNCC	1 cut(s)	120
NspV	TTCGAA	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	234
PkrI	GCNGC	3 cut(s)	282, 308, 493
PmaCI	CACGTG	1 cut(s)	92
PmlI	CACGTG	1 cut(s)	92
Ppu21I	YACGTR	3 cut(s)	92, 329, 374
PspCI	CACGTG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	392
RsaI	GTAC	3 cut(s)	37, 54, 327
RsaNI	GTAC	3 cut(s)	36, 53, 326
SacII	CCGCGG	1 cut(s)	310
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	20, 420
SatI	GCNGC	3 cut(s)	281, 307, 492
Sau3AI	GATC	3 cut(s)	102, 252, 392
ScrFI	CCNGG	1 cut(s)	426
SetI	ASST	9 cut(s)	37, 94, 115, 193, 260, 331, 364, 376, 415
SfaNI	GCATC	1 cut(s)	503
SfcI	CTRYAG	1 cut(s)	363
Sfr303I	CCGCGG	1 cut(s)	310
SfuI	TTCGAA	1 cut(s)	169
SgrBI	CCGCGG	1 cut(s)	310
SnaBI	TACGTA	1 cut(s)	329
Sse9I	AATT	6 cut(s)	17, 45, 57, 84, 198, 518
SsiI	CCGC	7 cut(s)	246, 275, 280, 307, 309, 450, 491
SspI	AATATT	1 cut(s)	404
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	4 cut(s)	94, 260, 331, 376
TaqI	TCGA	4 cut(s)	72, 96, 136, 169
TasI	AATT	6 cut(s)	17, 45, 57, 84, 198, 518
TatI	WGTACW	1 cut(s)	52
TauI	GCSGC	3 cut(s)	283, 309, 494
Tru1I	TTAA	2 cut(s)	20, 420
Tru9I	TTAA	2 cut(s)	20, 420
TspDTI	ATGAA	3 cut(s)	17, 456, 511
TspGWI	ACGGA	1 cut(s)	90
XapI	RAATTY	2 cut(s)	45, 198
XbaI	TCTAGA	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.