Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012759

Physical Location & Seq

Genomic Coordinates Reverse (-)

82826 .. 83482

Gene Structure 657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTACAACCCAAAGTCATCATTCTCTTTGGTTTGCACAACCAAAAAAGTATTCTGAAGGTTTAGAAGAAGATAAAAAAATACGAGACTGTATTAAAAATTATGTCCAAAAAAATATAAGAATATCCTCTGGTATGGAGGGAATTGCACGTATTGAAATTCAAAAAAGAATCGATCTCATCCAGATCATAATCTATATGGGATTTCCTAAATTATTAATTGAAGATAAACCCCGAAGAGTCGAAGAATTACAGATGAATGTTCAAAAAGAACTAAATTGTGTCAATAGAAAACTCAACATTGCTATTACCAGAATTTCCAATCCGTATGGGGATCCTAATATTCTTGCAGAATTTATCGCTGGACAATTAAAAAATCGCGTTTCTTTTCGAAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAGGCGAATACAAAAGGAATTCAAGTACAAATTGCAGGACGTATCGACGGAAAAGAAATTGCACGTGTTGAATGGATCAGAGAAGGCAGAGTTCCTTTACAAACAATTGAAGCTAAAATTGATTATTGTTCCTATACAGTTCGAACTATTTATGGGGTTTTAGGAATAAAAATTTGGATATTCGTAGACGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022626 GO:0022627 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S3_C

Protein Analysis

218

Amino Acids

25.19

Weight (kDa)

9.51

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S3_C	PF00189	131 - 213	2.5e-30	Ribosomal protein S3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28815 ATCG00790 ATCG00800
malus_domestica	MD14G1153600.v1.1
rosa_chinensis	RchiOBHm_Chr2g0118541 RchiOBHm_Chr2g0118571
rosa_laevigata	RLG00000000057 RLG00000000073 RLG00000000179 RLG00000000217 RLG00000037101
rosa_roxburghii	Rroxscaffold_2G00118980 Rroxscaffold_2G00118990 Rroxscaffold_2G00119190
rosa_samantha	Rh1CG032400 Rh1CG032500 Rh4BG101400
rosa_wichuraiana	Rw7G013520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	645
AccII	CGCG	1 cut(s)	414
AclWI	GGATC	3 cut(s)	362, 375, 542
AcsI	RAATTY	5 cut(s)	192, 348, 386, 477, 630
AcuI	CTGAAG	1 cut(s)	111
AcvI	CACGTG	1 cut(s)	524
AfaI	GTAC	2 cut(s)	40, 486
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	8 cut(s)	191, 197, 257, 299, 449, 482, 530, 569
AjuI	GAANNNNNNNTTGG	4 cut(s)	70, 102, 616, 648
AluBI	AGCT	2 cut(s)	443, 572
AluI	AGCT	2 cut(s)	443, 572
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	3 cut(s)	362, 375, 542
ApoI	RAATTY	5 cut(s)	192, 348, 386, 477, 630
AseI	ATTAAT	1 cut(s)	251
AsuII	TTCGAA	2 cut(s)	424, 601
BamHI	GGATCC	1 cut(s)	367
BbrPI	CACGTG	1 cut(s)	524
BcoDI	GTCTC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	369
Bpu14I	TTCGAA	2 cut(s)	424, 601
Bsa29I	ATCGAT	1 cut(s)	207
BsaAI	YACGTR	2 cut(s)	185, 524
BsaBI	GATNNNNATC	1 cut(s)	224
Bse3DI	GCAATG	2 cut(s)	333, 438
Bse8I	GATNNNNATC	1 cut(s)	224
BseCI	ATCGAT	1 cut(s)	207
BseGI	GGATG	1 cut(s)	213
BseJI	GATNNNNATC	1 cut(s)	224
BseMI	GCAATG	2 cut(s)	333, 438
Bsh1236I	CGCG	1 cut(s)	414
BshVI	ATCGAT	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	18
Bsp119I	TTCGAA	2 cut(s)	424, 601
Bsp143I	GATC	4 cut(s)	208, 219, 367, 534
BspDI	ATCGAT	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	369
BspPI	GGATC	3 cut(s)	362, 375, 542
BspT104I	TTCGAA	2 cut(s)	424, 601
BsrDI	GCAATG	2 cut(s)	333, 438
BssMI	GATC	4 cut(s)	208, 219, 367, 534
Bst4CI	ACNGT	2 cut(s)	125, 598
Bst6I	CTCTTC	1 cut(s)	265
BstBAI	YACGTR	2 cut(s)	185, 524
BstBI	TTCGAA	2 cut(s)	424, 601
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	414
BstKTI	GATC	4 cut(s)	211, 222, 370, 537
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	4 cut(s)	208, 219, 367, 534
BstUI	CGCG	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
Bsu15I	ATCGAT	1 cut(s)	207
BsuTUI	ATCGAT	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	213
ClaI	ATCGAT	1 cut(s)	207
Csp6I	GTAC	2 cut(s)	39, 485
CviJI	RGCY	2 cut(s)	443, 572
CviKI_1	RGCY	2 cut(s)	443, 572
CviQI	GTAC	2 cut(s)	39, 485
DpnI	GATC	4 cut(s)	210, 221, 369, 536
DpnII	GATC	4 cut(s)	208, 219, 367, 534
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	111
Eco72I	CACGTG	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	477
FaiI	YATR	9 cut(s)	138, 152, 170, 224, 231, 233, 363, 594, 612
FaqI	GGGAC	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	645
FokI	GGATG	1 cut(s)	200
HinfI	GANTC	2 cut(s)	204, 273
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	3 cut(s)	32, 91, 539
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	1 cut(s)	646
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	2 cut(s)	86, 536
HpyCH4III	ACNGT	2 cut(s)	125, 598
HpyCH4IV	ACGT	3 cut(s)	184, 499, 523
HpyCH4V	TGCA	5 cut(s)	71, 182, 383, 494, 521
HpySE526I	ACGT	3 cut(s)	184, 499, 523
Kzo9I	GATC	4 cut(s)	208, 219, 367, 534
LpnPI	CCDG	6 cut(s)	150, 230, 358, 381, 446, 480
MaeII	ACGT	3 cut(s)	184, 499, 523
MalI	GATC	4 cut(s)	210, 221, 369, 536
MboI	GATC	4 cut(s)	208, 219, 367, 534
MboII	GAAGA	5 cut(s)	113, 116, 269, 282, 290
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	1 cut(s)	367
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	2 cut(s)	166, 172
MseI	TTAA	4 cut(s)	129, 251, 404, 452
MunI	CAATTG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	414
NdeII	GATC	4 cut(s)	208, 219, 367, 534
NlaIV	GGNNCC	1 cut(s)	369
NspV	TTCGAA	2 cut(s)	424, 601
PfeI	GAWTC	1 cut(s)	204
PleI	GAGTC	1 cut(s)	281
PmaCI	CACGTG	1 cut(s)	524
PmlI	CACGTG	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	281
Ppu21I	YACGTR	2 cut(s)	185, 524
PshBI	ATTAAT	1 cut(s)	251
PspCI	CACGTG	1 cut(s)	524
PspN4I	GGNNCC	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	2 cut(s)	40, 486
RsaNI	GTAC	2 cut(s)	39, 485
SaqAI	TTAA	4 cut(s)	129, 251, 404, 452
Sau3AI	GATC	4 cut(s)	208, 219, 367, 534
SchI	GAGTC	1 cut(s)	282
SetI	ASST	6 cut(s)	97, 187, 445, 502, 526, 574
SfuI	TTCGAA	2 cut(s)	424, 601
SspI	AATATT	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	125, 598
TaiI	ACGT	3 cut(s)	187, 502, 526
TaqI	TCGA	5 cut(s)	207, 276, 424, 504, 601
TatI	WGTACW	1 cut(s)	484
TfiI	GAWTC	1 cut(s)	204
Tru1I	TTAA	4 cut(s)	129, 251, 404, 452
Tru9I	TTAA	4 cut(s)	129, 251, 404, 452
TspDTI	ATGAA	2 cut(s)	305, 449
TspGWI	ACGGA	2 cut(s)	348, 522
VspI	ATTAAT	1 cut(s)	251
XapI	RAATTY	5 cut(s)	192, 348, 386, 477, 630
XmiI	GTMKAC	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.