RchiOBHm_Chr2g0118571

Belongs to the universal ribosomal protein uL16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012759
Physical Location & Seq
Forward (+)
30728013 .. 30728372
360 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49134

Sequence Viewer

Length: 360 bp
ATGAAAGGAATGTCTTATCGAGGTAATCGTATTTGCTTTGGTATATATGCTCTTCAAGCACTTGAACCCGCTTGGATCACGTCTAGACAAATAGAAGTGGGACGGCGAGCAATGACACGAAATGCATGCCGTGGTGGAAAAATCTGGGTACGTATATTTCCAGACAAACTAGTTACAGTAAGACCTACAGAAACATGTATGGGTTCGGGGAAAGGATCTCCCGAATATTGGGTAGCTATTGTTAAACCCGGCAGAATACTTTATGAAATGAGCGGAGTGGCAGAAAATATAGCCAGAAGGGCTATTTCAGTAGCGCCATCAAAAATGCCTATACGAACTCAATTCATTCTTTCGGTATAG

Protein Analysis

119

Amino Acids

13.32

Weight (kDa)

10.52

Isoelectric Point (pI)

59.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L16 PF00252 1 - 116 3.1e-40 Ribosomal protein L16p/L10e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 273
AciI CCGC 2 cut(s) 69, 273
AclWI GGATC 2 cut(s) 83, 223
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 228
AflIII ACRYGT 1 cut(s) 194
AgsI TTSAA 2 cut(s) 56, 65
AhlI ACTAGT 1 cut(s) 169
AjiI CACGTC 1 cut(s) 81
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
AlwI GGATC 2 cut(s) 83, 223
AspLEI GCGC 1 cut(s) 316
AsuC2I CCSGG 1 cut(s) 249
BccI CCATC 1 cut(s) 325
BceAI ACGGC 2 cut(s) 114, 119
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BcnI CCSGG 1 cut(s) 249
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 2 cut(s) 84, 170
BfmI CTRYAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 317
BglI GCCNNNNNGGC 1 cut(s) 299
Bme1390I CCNGG 1 cut(s) 249
BmgBI CACGTC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 117
BsiSI CCGG 1 cut(s) 249
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 75, 215
BspACI CCGC 2 cut(s) 69, 273
BspPI GGATC 2 cut(s) 83, 223
BspQI GCTCTTC 1 cut(s) 57
BsrBI CCGCTC 1 cut(s) 273
BsrDI GCAATG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 130
BssMI GATC 2 cut(s) 75, 215
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 57
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 108, 127
BstDSI CCRYGG 1 cut(s) 130
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 2 cut(s) 78, 218
BstMBI GATC 2 cut(s) 75, 215
BstMWI GCNNNNNNNGC 2 cut(s) 56, 299
BstNSI RCATGY 2 cut(s) 129, 198
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 186
BstSNI TACGTA 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BtgI CCRYGG 1 cut(s) 130
BtrI CACGTC 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 108, 127
CfoI GCGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 149
CviAII CATG 2 cut(s) 126, 195
CviJI RGCY 3 cut(s) 236, 293, 302
CviKI_1 RGCY 3 cut(s) 236, 293, 302
CviQI GTAC 1 cut(s) 149
DpnI GATC 2 cut(s) 77, 217
DpnII GATC 2 cut(s) 75, 215
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco105I TACGTA 1 cut(s) 152
EcoT22I ATGCAT 1 cut(s) 127
FaeI CATG 2 cut(s) 129, 198
FaqI GGGAC 1 cut(s) 114
FatI CATG 2 cut(s) 125, 194
FauI CCCGC 1 cut(s) 76
FspBI CTAG 2 cut(s) 84, 170
GlaI GCGC 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 317
HapII CCGG 1 cut(s) 249
HhaI GCGC 1 cut(s) 316
Hin1II CATG 2 cut(s) 129, 198
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HpaII CCGG 1 cut(s) 249
Hpy188III TCNNGA 3 cut(s) 84, 161, 221
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 2 cut(s) 80, 151
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 299
HpySE526I ACGT 2 cut(s) 80, 151
Hsp92II CATG 2 cut(s) 129, 198
HspAI GCGC 1 cut(s) 314
Kzo9I GATC 2 cut(s) 75, 215
LguI GCTCTTC 1 cut(s) 57
LpnPI CCDG 4 cut(s) 130, 174, 262, 307
MaeI CTAG 2 cut(s) 84, 170
MaeII ACGT 2 cut(s) 80, 151
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 77, 217
MbiI CCGCTC 1 cut(s) 273
MboI GATC 2 cut(s) 75, 215
MboII GAAGA 1 cut(s) 44
MflI RGATCY 1 cut(s) 215
MluCI AATT 1 cut(s) 341
MnlI CCTC 1 cut(s) 14
Mph1103I ATGCAT 1 cut(s) 127
MseI TTAA 1 cut(s) 243
MspI CCGG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 56, 299
NciI CCSGG 1 cut(s) 249
NdeII GATC 2 cut(s) 75, 215
NlaIII CATG 2 cut(s) 129, 198
NsiI ATGCAT 1 cut(s) 127
NspI RCATGY 2 cut(s) 129, 198
PaeI GCATGC 1 cut(s) 129
PciI ACATGT 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 57
PcsI WCGNNNNNNNCGW 1 cut(s) 25
Ppu21I YACGTR 1 cut(s) 152
PscI ACATGT 1 cut(s) 194
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 243
Sau3AI GATC 2 cut(s) 75, 215
ScrFI CCNGG 1 cut(s) 249
SetI ASST 5 cut(s) 25, 83, 154, 187, 238
SfcI CTRYAG 1 cut(s) 186
SnaBI TACGTA 1 cut(s) 152
SpeI ACTAGT 1 cut(s) 169
SphI GCATGC 1 cut(s) 129
Sse9I AATT 1 cut(s) 341
SsiI CCGC 2 cut(s) 69, 273
SspI AATATT 1 cut(s) 227
SspMI CTAG 2 cut(s) 84, 170
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 2 cut(s) 83, 154
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 341
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TspDTI ATGAA 3 cut(s) 17, 279, 334
XbaI TCTAGA 1 cut(s) 83
XceI RCATGY 2 cut(s) 129, 198
XspI CTAG 2 cut(s) 84, 170
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.