Rroxscaffold_2G00119190

Belongs to the universal ribosomal protein uS3 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
51076789 .. 51081199
4411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119190.1

Sequence Viewer

Length: 1260 bp
ATGGGACAAAAAATAAATCCACTTGGTTTCAGACTTGGTGCAACCCAAAGTCATCATTCTCTTTGGTTTGCACAACCAAAAAATTATTCCGAGGATCTACAAGAAGATCAAAAAATACGAGATTGTATCAAAAATTATGTACAAAAAAATCTGAAAATATCCTCTAATGTCGAGGGAATTGCACGTATAGAGATTCAAAAAAGAATCGATTTGATTCAAGTCATAATCTATATGGGATTCCCCAAGTTATTAATAGAAGACAGGACTCGCAAAATCGAAGAATTACAGTTCAATGTACAAAAAGAACTCAATTGTGTAAACCGAAAACTCAACATTGCTATTACAAGAATTGTAAACCCTTATGGGCACCCCAATATTCTTGCGGAATTTATAGCCGGACAATTAAAAAATAGAGTTTCATTTCGCAAAGCAATGAAAAAGGCTATTGAATTAACTGAGCAGGCAGGTACAAAAGGAATTCAAGTACAAATTGCAGGGCGTATCGACGGAAAAGAAATTGCACGTGTCGAATGGATCAGAGAAGGAAGAATGAAAGGAATGTCTTATCGAGGTAATAGTATTTGCTTTGGTAGATATGCTCTTCAAGCACTTGAACCCGCTTGGATCACGTCTAGACAAATAGAAGCGGGGCGGCGAGCAATGACACGAAATGCACGCCGCGGTGGAAAAATCTGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTACAGAAACACGTATGGGTTCGGGGAAAGGATCTCCCGAATATTGGGTAGCTGTTGTTAAACCCGGCAGAATACTTTATGAAATGAGCGGAGTGGCAGAAAATATAGCCAGAAGGGCTATTTCAATAGCGGCATCAAAAATGCCTATACGAACTCAATTCATTCTTTCGAATGCGCGTAGAATACCAAAGGGAGTTATTCATGTTCAAGCAAGTTTCAACAATACCATTGTGACTGTTACAGATGTACGGGGTCGAGTAATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACAAGAAGAGGGACACCATTTGCCGCTCAAACCGCAGCGGGAAATGCTATTCGTACAGTGGTGGATCAAGGTATGCAACGAGCAGAAGTCATGATAAAAGGCCCGGGTCTCGGGAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGCATACTATTAAGTTTCATACGGGATGTAACCCCTATGCCGCATAATGGCTGTAGGCCCCCCAAAAAAAGACGTGTGTAA

Protein Analysis

419

Amino Acids

47.08

Weight (kDa)

10.89

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S3_C PF00189 131 - 185 1.1e-16 Ribosomal protein S3, C-terminal domain
Ribosomal_L16 PF00252 180 - 299 8.4e-46 Ribosomal protein L16p/L10e
Ribosomal_S11 PF00411 309 - 418 2.2e-50 Ribosomal protein S11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 455
AccB1I GGYRCC 1 cut(s) 366
AccBSI CCGCTC 2 cut(s) 822, 1058
AccII CGCG 2 cut(s) 681, 910
AclWI GGATC 5 cut(s) 102, 542, 632, 772, 1104
AcsI RAATTY 2 cut(s) 386, 477
AcvI CACGTG 1 cut(s) 524
AfaI GTAC 9 cut(s) 141, 297, 469, 486, 699, 981, 1015, 1033, 1087
AfiI CCNNNNNNNGG 3 cut(s) 777, 1142, 1226
AflIII ACRYGT 3 cut(s) 523, 743, 1252
AjiI CACGTC 2 cut(s) 630, 1253
AjuI GAANNNNNNNTTGG 2 cut(s) 70, 102
AluBI AGCT 2 cut(s) 785, 1166
AluI AGCT 2 cut(s) 785, 1166
Alw26I GTCTC 1 cut(s) 1145
AlwI GGATC 5 cut(s) 102, 542, 632, 772, 1104
Ama87I CYCGRG 2 cut(s) 1135, 1142
AoxI GGCC 2 cut(s) 1132, 1235
ApeKI GCWGC 1 cut(s) 1067
ApoI RAATTY 2 cut(s) 386, 477
AseI ATTAAT 1 cut(s) 251
AspLEI GCGC 1 cut(s) 910
AspS9I GGNCC 3 cut(s) 1002, 1133, 1236
AsuC2I CCSGG 3 cut(s) 798, 1136, 1137
AsuII TTCGAA 1 cut(s) 902
AvaI CYCGRG 2 cut(s) 1135, 1142
AvaII GGWCC 1 cut(s) 1002
BaeGI GKGCMC 1 cut(s) 369
BanI GGYRCC 1 cut(s) 366
BbrPI CACGTG 1 cut(s) 524
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 1079
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BcnI CCSGG 3 cut(s) 798, 1136, 1137
BcoDI GTCTC 1 cut(s) 1145
BfaI CTAG 1 cut(s) 633
BfmI CTRYAG 2 cut(s) 735, 1231
BfuAI ACCTGC 1 cut(s) 455
BglI GCCNNNNNGGC 1 cut(s) 848
BisI GCNGC 7 cut(s) 653, 679, 864, 1056, 1068, 1155, 1220
BlsI GCNGC 7 cut(s) 654, 680, 865, 1057, 1069, 1156, 1221
Bme1390I CCNGG 3 cut(s) 798, 1136, 1137
Bme18I GGWCC 1 cut(s) 1002
BmeT110I CYCGRG 2 cut(s) 1135, 1142
BmgBI CACGTC 2 cut(s) 630, 1253
BmgT120I GGNCC 3 cut(s) 1002, 1133, 1236
BmiI GGNNCC 2 cut(s) 368, 1238
BmrFI CCNGG 3 cut(s) 798, 1136, 1137
BmsI GCATC 2 cut(s) 875, 1141
BpiI GAAGAC 1 cut(s) 264
Bpu14I TTCGAA 1 cut(s) 902
BpuMI CCSGG 3 cut(s) 798, 1136, 1137
Bsa29I ATCGAT 1 cut(s) 207
BsaAI YACGTR 4 cut(s) 185, 524, 701, 746
BsaI GGTCTC 1 cut(s) 1145
BsaJI CCNNGG 3 cut(s) 90, 679, 1135
Bsc4I CCNNNNNNNGG 3 cut(s) 777, 1142, 1226
Bse118I RCCGGY 1 cut(s) 1010
Bse1I ACTGG 1 cut(s) 719
Bse3DI GCAATG 3 cut(s) 333, 438, 666
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 3 cut(s) 90, 679, 1135
BseGI GGATG 1 cut(s) 1210
BseLI CCNNNNNNNGG 3 cut(s) 777, 1142, 1226
BseMI GCAATG 3 cut(s) 333, 438, 666
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 719
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 1 cut(s) 1079
Bsh1236I CGCG 2 cut(s) 681, 910
BshFI GGCC 2 cut(s) 1134, 1237
BshNI GGYRCC 1 cut(s) 366
BshVI ATCGAT 1 cut(s) 207
BsiHKCI CYCGRG 2 cut(s) 1135, 1142
BsiSI CCGG 4 cut(s) 396, 798, 1011, 1136
BslFI GGGAC 2 cut(s) 18, 1057
BslI CCNNNNNNNGG 3 cut(s) 777, 1142, 1226
BsmAI GTCTC 1 cut(s) 1145
BsmFI GGGAC 2 cut(s) 18, 1057
BsmI GAATGC 1 cut(s) 910
BsnI GGCC 2 cut(s) 1134, 1237
Bso31I GGTCTC 1 cut(s) 1145
BsoBI CYCGRG 2 cut(s) 1135, 1142
Bsp119I TTCGAA 1 cut(s) 902
Bsp1286I GDGCHC 1 cut(s) 369
Bsp1407I TGTACA 2 cut(s) 139, 295
Bsp143I GATC 6 cut(s) 94, 106, 534, 624, 764, 1096
BspANI GGCC 2 cut(s) 1134, 1237
BspCNI CTCAG 1 cut(s) 448
BspDI ATCGAT 1 cut(s) 207
BspFNI CGCG 2 cut(s) 681, 910
BspHI TCATGA 1 cut(s) 1122
BspLI GGNNCC 2 cut(s) 368, 1238
BspMI ACCTGC 1 cut(s) 455
BspPI GGATC 5 cut(s) 102, 542, 632, 772, 1104
BspQI GCTCTTC 1 cut(s) 606
BspT104I TTCGAA 1 cut(s) 902
BspT107I GGYRCC 1 cut(s) 366
BspTNI GGTCTC 1 cut(s) 1145
BsrBI CCGCTC 2 cut(s) 822, 1058
BsrDI GCAATG 3 cut(s) 333, 438, 666
BsrFI RCCGGY 1 cut(s) 1010
BsrGI TGTACA 2 cut(s) 139, 295
BsrI ACTGG 1 cut(s) 719
BssAI RCCGGY 1 cut(s) 1010
BssECI CCNNGG 3 cut(s) 90, 679, 1135
BssMI GATC 6 cut(s) 94, 106, 534, 624, 764, 1096
Bst4CI ACNGT 4 cut(s) 288, 727, 970, 1090
Bst6I CTCTTC 2 cut(s) 606, 1033
BstAUI TGTACA 2 cut(s) 139, 295
BstBAI YACGTR 4 cut(s) 185, 524, 701, 746
BstBI TTCGAA 1 cut(s) 902
BstC8I GCNNGC 3 cut(s) 462, 657, 676
BstDEI CTNAG 1 cut(s) 456
BstDSI CCRYGG 1 cut(s) 679
BstF5I GGATG 1 cut(s) 1210
BstFNI CGCG 2 cut(s) 681, 910
BstHHI GCGC 1 cut(s) 910
BstKTI GATC 6 cut(s) 97, 109, 537, 627, 767, 1099
BstMAI GTCTC 1 cut(s) 1145
BstMBI GATC 6 cut(s) 94, 106, 534, 624, 764, 1096
BstMWI GCNNNNNNNGC 5 cut(s) 605, 848, 1064, 1076, 1163
BstSCI CCNGG 3 cut(s) 796, 1134, 1135
BstSFI CTRYAG 2 cut(s) 735, 1231
BstSLI GKGCMC 1 cut(s) 369
BstSNI TACGTA 1 cut(s) 701
BstUI CGCG 2 cut(s) 681, 910
BstV1I GCAGC 1 cut(s) 1079
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 2 cut(s) 94, 764
BstYI RGATCY 2 cut(s) 94, 764
Bsu15I ATCGAT 1 cut(s) 207
BsuRI GGCC 2 cut(s) 1134, 1237
BsuTUI ATCGAT 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 679
BtrI CACGTC 2 cut(s) 630, 1253
BtsCI GGATG 1 cut(s) 1210
BtsIMutI CAGTG 1 cut(s) 1095
BveI ACCTGC 1 cut(s) 455
Cac8I GCNNGC 3 cut(s) 462, 657, 676
CciI TCATGA 1 cut(s) 1122
CfoI GCGC 1 cut(s) 910
Cfr10I RCCGGY 1 cut(s) 1010
Cfr13I GGNCC 3 cut(s) 1002, 1133, 1236
Cfr42I CCGCGG 1 cut(s) 682
Cfr9I CCCGGG 1 cut(s) 1135
ClaI ATCGAT 1 cut(s) 207
Csp6I GTAC 9 cut(s) 140, 296, 468, 485, 698, 980, 1014, 1032, 1086
CviAII CATG 2 cut(s) 935, 1123
CviJI RGCY 9 cut(s) 395, 443, 785, 842, 851, 1134, 1166, 1230, 1237
CviKI_1 RGCY 9 cut(s) 395, 443, 785, 842, 851, 1134, 1166, 1230, 1237
CviQI GTAC 9 cut(s) 140, 296, 468, 485, 698, 980, 1014, 1032, 1086
DdeI CTNAG 1 cut(s) 456
DpnI GATC 6 cut(s) 96, 108, 536, 626, 766, 1098
DpnII GATC 6 cut(s) 94, 106, 534, 624, 764, 1096
Eam1104I CTCTTC 2 cut(s) 606, 1033
EarI CTCTTC 2 cut(s) 606, 1033
EciI GGCGGA 1 cut(s) 997
Eco105I TACGTA 1 cut(s) 701
Eco31I GGTCTC 1 cut(s) 1145
Eco47I GGWCC 1 cut(s) 1002
Eco72I CACGTG 1 cut(s) 524
Eco88I CYCGRG 2 cut(s) 1135, 1142
EcoO109I RGGNCCY 1 cut(s) 1236
EcoRI GAATTC 1 cut(s) 477
FaeI CATG 2 cut(s) 938, 1126
FaqI GGGAC 2 cut(s) 18, 1057
FatI CATG 2 cut(s) 934, 1122
FauI CCCGC 3 cut(s) 625, 640, 1063
Fnu4HI GCNGC 7 cut(s) 653, 679, 864, 1056, 1068, 1155, 1220
FokI GGATG 1 cut(s) 1217
Fsp4HI GCNGC 7 cut(s) 653, 679, 864, 1056, 1068, 1155, 1220
FspBI CTAG 1 cut(s) 633
GlaI GCGC 1 cut(s) 909
GluI GCNGC 7 cut(s) 653, 679, 864, 1056, 1068, 1155, 1220
HaeIII GGCC 2 cut(s) 1134, 1237
HapII CCGG 4 cut(s) 396, 798, 1011, 1136
HhaI GCGC 1 cut(s) 910
Hin1II CATG 2 cut(s) 938, 1126
Hin6I GCGC 1 cut(s) 908
HinP1I GCGC 1 cut(s) 908
HinfI GANTC 6 cut(s) 193, 204, 214, 237, 265, 1023
HpaII CCGG 4 cut(s) 396, 798, 1011, 1136
Hpy166II GTNNAC 2 cut(s) 319, 355
Hpy188I TCNGA 4 cut(s) 32, 91, 153, 539
Hpy188III TCNNGA 5 cut(s) 633, 710, 770, 1123, 1144
Hpy8I GTNNAC 2 cut(s) 319, 355
Hpy99I CGWCG 1 cut(s) 509
HpyAV CCTTC 2 cut(s) 536, 840
HpyCH4III ACNGT 4 cut(s) 288, 727, 970, 1090
HpyCH4IV ACGT 6 cut(s) 184, 523, 629, 700, 745, 1252
HpyCH4V TGCA 7 cut(s) 41, 71, 182, 494, 521, 674, 1108
HpyF10VI GCNNNNNNNGC 5 cut(s) 605, 848, 1064, 1076, 1163
HpyF3I CTNAG 1 cut(s) 456
HpySE526I ACGT 6 cut(s) 184, 523, 629, 700, 745, 1252
Hsp92II CATG 2 cut(s) 938, 1126
HspAI GCGC 1 cut(s) 908
KspI CCGCGG 1 cut(s) 682
Kzo9I GATC 6 cut(s) 94, 106, 534, 624, 764, 1096
LguI GCTCTTC 1 cut(s) 606
Lsp1109I GCAGC 1 cut(s) 1079
LweI GCATC 2 cut(s) 875, 1141
MaeI CTAG 1 cut(s) 633
MaeII ACGT 6 cut(s) 184, 523, 629, 700, 745, 1252
MaeIII GTNAC 4 cut(s) 721, 964, 970, 1207
MalI GATC 6 cut(s) 96, 108, 536, 626, 766, 1098
MbiI CCGCTC 2 cut(s) 822, 1058
MboI GATC 6 cut(s) 94, 106, 534, 624, 764, 1096
MboII GAAGA 6 cut(s) 116, 269, 290, 558, 593, 1050
MfeI CAATTG 1 cut(s) 310
MflI RGATCY 2 cut(s) 94, 764
MhlI GDGCHC 1 cut(s) 369
MlyI GAGTC 1 cut(s) 259
MnlI CCTC 6 cut(s) 85, 166, 172, 563, 1015, 1034
MseI TTAA 6 cut(s) 251, 404, 452, 792, 1160, 1190
MspA1I CMGCKG 2 cut(s) 681, 1070
MspI CCGG 4 cut(s) 396, 798, 1011, 1136
MspR9I CCNGG 3 cut(s) 798, 1136, 1137
MunI CAATTG 1 cut(s) 310
Mva1269I GAATGC 1 cut(s) 910
MvnI CGCG 2 cut(s) 681, 910
MwoI GCNNNNNNNGC 5 cut(s) 605, 848, 1064, 1076, 1163
NciI CCSGG 3 cut(s) 798, 1136, 1137
NdeII GATC 6 cut(s) 94, 106, 534, 624, 764, 1096
NlaIII CATG 2 cut(s) 938, 1126
NlaIV GGNNCC 2 cut(s) 368, 1238
NmuCI GTSAC 1 cut(s) 964
NspV TTCGAA 1 cut(s) 902
PagI TCATGA 1 cut(s) 1122
PciSI GCTCTTC 1 cut(s) 606
PctI GAATGC 1 cut(s) 910
PfeI GAWTC 5 cut(s) 193, 204, 214, 237, 1023
PkrI GCNGC 7 cut(s) 654, 680, 865, 1057, 1069, 1156, 1221
PleI GAGTC 1 cut(s) 259
PmaCI CACGTG 1 cut(s) 524
PmlI CACGTG 1 cut(s) 524
PpsI GAGTC 1 cut(s) 259
Ppu21I YACGTR 4 cut(s) 185, 524, 701, 746
PshBI ATTAAT 1 cut(s) 251
PspCI CACGTG 1 cut(s) 524
PspN4I GGNNCC 2 cut(s) 368, 1238
PspPI GGNCC 3 cut(s) 1002, 1133, 1236
PsuI RGATCY 2 cut(s) 94, 764
RsaI GTAC 9 cut(s) 141, 297, 469, 486, 699, 981, 1015, 1033, 1087
RsaNI GTAC 9 cut(s) 140, 296, 468, 485, 698, 980, 1014, 1032, 1086
SacII CCGCGG 1 cut(s) 682
SapI GCTCTTC 1 cut(s) 606
SaqAI TTAA 6 cut(s) 251, 404, 452, 792, 1160, 1190
SatI GCNGC 7 cut(s) 653, 679, 864, 1056, 1068, 1155, 1220
Sau3AI GATC 6 cut(s) 94, 106, 534, 624, 764, 1096
Sau96I GGNCC 3 cut(s) 1002, 1133, 1236
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 3 cut(s) 798, 1136, 1137
SduI GDGCHC 1 cut(s) 369
SfaNI GCATC 2 cut(s) 875, 1141
SfcI CTRYAG 2 cut(s) 735, 1231
Sfr303I CCGCGG 1 cut(s) 682
SfuI TTCGAA 1 cut(s) 902
SgrBI CCGCGG 1 cut(s) 682
SinI GGWCC 1 cut(s) 1002
SmaI CCCGGG 1 cut(s) 1137
SnaBI TACGTA 1 cut(s) 701
SspI AATATT 2 cut(s) 376, 776
SspMI CTAG 1 cut(s) 633
StyD4I CCNGG 3 cut(s) 796, 1134, 1135
TaaI ACNGT 4 cut(s) 288, 727, 970, 1090
TaiI ACGT 6 cut(s) 187, 526, 632, 703, 748, 1255
TaqI TCGA 8 cut(s) 171, 207, 276, 504, 528, 568, 902, 988
TatI WGTACW 3 cut(s) 139, 295, 484
TauI GCSGC 6 cut(s) 655, 681, 866, 1058, 1157, 1222
TfiI GAWTC 5 cut(s) 193, 204, 214, 237, 1023
Tru1I TTAA 6 cut(s) 251, 404, 452, 792, 1160, 1190
Tru9I TTAA 6 cut(s) 251, 404, 452, 792, 1160, 1190
TscAI CASTG 1 cut(s) 1095
TseFI GTSAC 1 cut(s) 964
TseI GCWGC 1 cut(s) 1067
Tsp45I GTSAC 1 cut(s) 964
TspDTI ATGAA 7 cut(s) 408, 449, 566, 828, 883, 923, 1186
TspGWI ACGGA 1 cut(s) 522
TspMI CCCGGG 1 cut(s) 1135
TspRI CASTG 1 cut(s) 1095
VpaK11BI GGWCC 1 cut(s) 1002
VspI ATTAAT 1 cut(s) 251
XapI RAATTY 2 cut(s) 386, 477
XbaI TCTAGA 1 cut(s) 632
XmaI CCCGGG 1 cut(s) 1135
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.