Belongs to the universal ribosomal protein uS3 family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G28815 ATCG00790 ATCG00800 |
| malus_domestica | MD14G1153600.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0118541 RchiOBHm_Chr2g0118571 |
| rosa_laevigata | RLG00000000057 RLG00000000073 RLG00000000179 RLG00000000217 RLG00000037101 |
| rosa_roxburghii | Rroxscaffold_2G00118980 Rroxscaffold_2G00118990 Rroxscaffold_2G00119190 |
| rosa_samantha | Rh1CG032400 Rh1CG032500 Rh4BG101400 |
| rosa_wichuraiana | Rw7G013520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 455 |
| AccB1I | GGYRCC | 1 cut(s) | 366 |
| AccBSI | CCGCTC | 2 cut(s) | 822, 1058 |
| AccII | CGCG | 2 cut(s) | 681, 910 |
| AclWI | GGATC | 5 cut(s) | 102, 542, 632, 772, 1104 |
| AcsI | RAATTY | 2 cut(s) | 386, 477 |
| AcvI | CACGTG | 1 cut(s) | 524 |
| AfaI | GTAC | 9 cut(s) | 141, 297, 469, 486, 699, 981, 1015, 1033, 1087 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 777, 1142, 1226 |
| AflIII | ACRYGT | 3 cut(s) | 523, 743, 1252 |
| AjiI | CACGTC | 2 cut(s) | 630, 1253 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 70, 102 |
| AluBI | AGCT | 2 cut(s) | 785, 1166 |
| AluI | AGCT | 2 cut(s) | 785, 1166 |
| Alw26I | GTCTC | 1 cut(s) | 1145 |
| AlwI | GGATC | 5 cut(s) | 102, 542, 632, 772, 1104 |
| Ama87I | CYCGRG | 2 cut(s) | 1135, 1142 |
| AoxI | GGCC | 2 cut(s) | 1132, 1235 |
| ApeKI | GCWGC | 1 cut(s) | 1067 |
| ApoI | RAATTY | 2 cut(s) | 386, 477 |
| AseI | ATTAAT | 1 cut(s) | 251 |
| AspLEI | GCGC | 1 cut(s) | 910 |
| AspS9I | GGNCC | 3 cut(s) | 1002, 1133, 1236 |
| AsuC2I | CCSGG | 3 cut(s) | 798, 1136, 1137 |
| AsuII | TTCGAA | 1 cut(s) | 902 |
| AvaI | CYCGRG | 2 cut(s) | 1135, 1142 |
| AvaII | GGWCC | 1 cut(s) | 1002 |
| BaeGI | GKGCMC | 1 cut(s) | 369 |
| BanI | GGYRCC | 1 cut(s) | 366 |
| BbrPI | CACGTG | 1 cut(s) | 524 |
| BbsI | GAAGAC | 1 cut(s) | 264 |
| BbvI | GCAGC | 1 cut(s) | 1079 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 161, 195 |
| BcnI | CCSGG | 3 cut(s) | 798, 1136, 1137 |
| BcoDI | GTCTC | 1 cut(s) | 1145 |
| BfaI | CTAG | 1 cut(s) | 633 |
| BfmI | CTRYAG | 2 cut(s) | 735, 1231 |
| BfuAI | ACCTGC | 1 cut(s) | 455 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 848 |
| BisI | GCNGC | 7 cut(s) | 653, 679, 864, 1056, 1068, 1155, 1220 |
| BlsI | GCNGC | 7 cut(s) | 654, 680, 865, 1057, 1069, 1156, 1221 |
| Bme1390I | CCNGG | 3 cut(s) | 798, 1136, 1137 |
| Bme18I | GGWCC | 1 cut(s) | 1002 |
| BmeT110I | CYCGRG | 2 cut(s) | 1135, 1142 |
| BmgBI | CACGTC | 2 cut(s) | 630, 1253 |
| BmgT120I | GGNCC | 3 cut(s) | 1002, 1133, 1236 |
| BmiI | GGNNCC | 2 cut(s) | 368, 1238 |
| BmrFI | CCNGG | 3 cut(s) | 798, 1136, 1137 |
| BmsI | GCATC | 2 cut(s) | 875, 1141 |
| BpiI | GAAGAC | 1 cut(s) | 264 |
| Bpu14I | TTCGAA | 1 cut(s) | 902 |
| BpuMI | CCSGG | 3 cut(s) | 798, 1136, 1137 |
| Bsa29I | ATCGAT | 1 cut(s) | 207 |
| BsaAI | YACGTR | 4 cut(s) | 185, 524, 701, 746 |
| BsaI | GGTCTC | 1 cut(s) | 1145 |
| BsaJI | CCNNGG | 3 cut(s) | 90, 679, 1135 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 777, 1142, 1226 |
| Bse118I | RCCGGY | 1 cut(s) | 1010 |
| Bse1I | ACTGG | 1 cut(s) | 719 |
| Bse3DI | GCAATG | 3 cut(s) | 333, 438, 666 |
| BseCI | ATCGAT | 1 cut(s) | 207 |
| BseDI | CCNNGG | 3 cut(s) | 90, 679, 1135 |
| BseGI | GGATG | 1 cut(s) | 1210 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 777, 1142, 1226 |
| BseMI | GCAATG | 3 cut(s) | 333, 438, 666 |
| BseMII | CTCAG | 1 cut(s) | 447 |
| BseNI | ACTGG | 1 cut(s) | 719 |
| BseSI | GKGCMC | 1 cut(s) | 369 |
| BseXI | GCAGC | 1 cut(s) | 1079 |
| Bsh1236I | CGCG | 2 cut(s) | 681, 910 |
| BshFI | GGCC | 2 cut(s) | 1134, 1237 |
| BshNI | GGYRCC | 1 cut(s) | 366 |
| BshVI | ATCGAT | 1 cut(s) | 207 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1135, 1142 |
| BsiSI | CCGG | 4 cut(s) | 396, 798, 1011, 1136 |
| BslFI | GGGAC | 2 cut(s) | 18, 1057 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 777, 1142, 1226 |
| BsmAI | GTCTC | 1 cut(s) | 1145 |
| BsmFI | GGGAC | 2 cut(s) | 18, 1057 |
| BsmI | GAATGC | 1 cut(s) | 910 |
| BsnI | GGCC | 2 cut(s) | 1134, 1237 |
| Bso31I | GGTCTC | 1 cut(s) | 1145 |
| BsoBI | CYCGRG | 2 cut(s) | 1135, 1142 |
| Bsp119I | TTCGAA | 1 cut(s) | 902 |
| Bsp1286I | GDGCHC | 1 cut(s) | 369 |
| Bsp1407I | TGTACA | 2 cut(s) | 139, 295 |
| Bsp143I | GATC | 6 cut(s) | 94, 106, 534, 624, 764, 1096 |
| BspANI | GGCC | 2 cut(s) | 1134, 1237 |
| BspCNI | CTCAG | 1 cut(s) | 448 |
| BspDI | ATCGAT | 1 cut(s) | 207 |
| BspFNI | CGCG | 2 cut(s) | 681, 910 |
| BspHI | TCATGA | 1 cut(s) | 1122 |
| BspLI | GGNNCC | 2 cut(s) | 368, 1238 |
| BspMI | ACCTGC | 1 cut(s) | 455 |
| BspPI | GGATC | 5 cut(s) | 102, 542, 632, 772, 1104 |
| BspQI | GCTCTTC | 1 cut(s) | 606 |
| BspT104I | TTCGAA | 1 cut(s) | 902 |
| BspT107I | GGYRCC | 1 cut(s) | 366 |
| BspTNI | GGTCTC | 1 cut(s) | 1145 |
| BsrBI | CCGCTC | 2 cut(s) | 822, 1058 |
| BsrDI | GCAATG | 3 cut(s) | 333, 438, 666 |
| BsrFI | RCCGGY | 1 cut(s) | 1010 |
| BsrGI | TGTACA | 2 cut(s) | 139, 295 |
| BsrI | ACTGG | 1 cut(s) | 719 |
| BssAI | RCCGGY | 1 cut(s) | 1010 |
| BssECI | CCNNGG | 3 cut(s) | 90, 679, 1135 |
| BssMI | GATC | 6 cut(s) | 94, 106, 534, 624, 764, 1096 |
| Bst4CI | ACNGT | 4 cut(s) | 288, 727, 970, 1090 |
| Bst6I | CTCTTC | 2 cut(s) | 606, 1033 |
| BstAUI | TGTACA | 2 cut(s) | 139, 295 |
| BstBAI | YACGTR | 4 cut(s) | 185, 524, 701, 746 |
| BstBI | TTCGAA | 1 cut(s) | 902 |
| BstC8I | GCNNGC | 3 cut(s) | 462, 657, 676 |
| BstDEI | CTNAG | 1 cut(s) | 456 |
| BstDSI | CCRYGG | 1 cut(s) | 679 |
| BstF5I | GGATG | 1 cut(s) | 1210 |
| BstFNI | CGCG | 2 cut(s) | 681, 910 |
| BstHHI | GCGC | 1 cut(s) | 910 |
| BstKTI | GATC | 6 cut(s) | 97, 109, 537, 627, 767, 1099 |
| BstMAI | GTCTC | 1 cut(s) | 1145 |
| BstMBI | GATC | 6 cut(s) | 94, 106, 534, 624, 764, 1096 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 605, 848, 1064, 1076, 1163 |
| BstSCI | CCNGG | 3 cut(s) | 796, 1134, 1135 |
| BstSFI | CTRYAG | 2 cut(s) | 735, 1231 |
| BstSLI | GKGCMC | 1 cut(s) | 369 |
| BstSNI | TACGTA | 1 cut(s) | 701 |
| BstUI | CGCG | 2 cut(s) | 681, 910 |
| BstV1I | GCAGC | 1 cut(s) | 1079 |
| BstV2I | GAAGAC | 1 cut(s) | 264 |
| BstX2I | RGATCY | 2 cut(s) | 94, 764 |
| BstYI | RGATCY | 2 cut(s) | 94, 764 |
| Bsu15I | ATCGAT | 1 cut(s) | 207 |
| BsuRI | GGCC | 2 cut(s) | 1134, 1237 |
| BsuTUI | ATCGAT | 1 cut(s) | 207 |
| BtgI | CCRYGG | 1 cut(s) | 679 |
| BtrI | CACGTC | 2 cut(s) | 630, 1253 |
| BtsCI | GGATG | 1 cut(s) | 1210 |
| BtsIMutI | CAGTG | 1 cut(s) | 1095 |
| BveI | ACCTGC | 1 cut(s) | 455 |
| Cac8I | GCNNGC | 3 cut(s) | 462, 657, 676 |
| CciI | TCATGA | 1 cut(s) | 1122 |
| CfoI | GCGC | 1 cut(s) | 910 |
| Cfr10I | RCCGGY | 1 cut(s) | 1010 |
| Cfr13I | GGNCC | 3 cut(s) | 1002, 1133, 1236 |
| Cfr42I | CCGCGG | 1 cut(s) | 682 |
| Cfr9I | CCCGGG | 1 cut(s) | 1135 |
| ClaI | ATCGAT | 1 cut(s) | 207 |
| Csp6I | GTAC | 9 cut(s) | 140, 296, 468, 485, 698, 980, 1014, 1032, 1086 |
| CviAII | CATG | 2 cut(s) | 935, 1123 |
| CviJI | RGCY | 9 cut(s) | 395, 443, 785, 842, 851, 1134, 1166, 1230, 1237 |
| CviKI_1 | RGCY | 9 cut(s) | 395, 443, 785, 842, 851, 1134, 1166, 1230, 1237 |
| CviQI | GTAC | 9 cut(s) | 140, 296, 468, 485, 698, 980, 1014, 1032, 1086 |
| DdeI | CTNAG | 1 cut(s) | 456 |
| DpnI | GATC | 6 cut(s) | 96, 108, 536, 626, 766, 1098 |
| DpnII | GATC | 6 cut(s) | 94, 106, 534, 624, 764, 1096 |
| Eam1104I | CTCTTC | 2 cut(s) | 606, 1033 |
| EarI | CTCTTC | 2 cut(s) | 606, 1033 |
| EciI | GGCGGA | 1 cut(s) | 997 |
| Eco105I | TACGTA | 1 cut(s) | 701 |
| Eco31I | GGTCTC | 1 cut(s) | 1145 |
| Eco47I | GGWCC | 1 cut(s) | 1002 |
| Eco72I | CACGTG | 1 cut(s) | 524 |
| Eco88I | CYCGRG | 2 cut(s) | 1135, 1142 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1236 |
| EcoRI | GAATTC | 1 cut(s) | 477 |
| FaeI | CATG | 2 cut(s) | 938, 1126 |
| FaqI | GGGAC | 2 cut(s) | 18, 1057 |
| FatI | CATG | 2 cut(s) | 934, 1122 |
| FauI | CCCGC | 3 cut(s) | 625, 640, 1063 |
| Fnu4HI | GCNGC | 7 cut(s) | 653, 679, 864, 1056, 1068, 1155, 1220 |
| FokI | GGATG | 1 cut(s) | 1217 |
| Fsp4HI | GCNGC | 7 cut(s) | 653, 679, 864, 1056, 1068, 1155, 1220 |
| FspBI | CTAG | 1 cut(s) | 633 |
| GlaI | GCGC | 1 cut(s) | 909 |
| GluI | GCNGC | 7 cut(s) | 653, 679, 864, 1056, 1068, 1155, 1220 |
| HaeIII | GGCC | 2 cut(s) | 1134, 1237 |
| HapII | CCGG | 4 cut(s) | 396, 798, 1011, 1136 |
| HhaI | GCGC | 1 cut(s) | 910 |
| Hin1II | CATG | 2 cut(s) | 938, 1126 |
| Hin6I | GCGC | 1 cut(s) | 908 |
| HinP1I | GCGC | 1 cut(s) | 908 |
| HinfI | GANTC | 6 cut(s) | 193, 204, 214, 237, 265, 1023 |
| HpaII | CCGG | 4 cut(s) | 396, 798, 1011, 1136 |
| Hpy166II | GTNNAC | 2 cut(s) | 319, 355 |
| Hpy188I | TCNGA | 4 cut(s) | 32, 91, 153, 539 |
| Hpy188III | TCNNGA | 5 cut(s) | 633, 710, 770, 1123, 1144 |
| Hpy8I | GTNNAC | 2 cut(s) | 319, 355 |
| Hpy99I | CGWCG | 1 cut(s) | 509 |
| HpyAV | CCTTC | 2 cut(s) | 536, 840 |
| HpyCH4III | ACNGT | 4 cut(s) | 288, 727, 970, 1090 |
| HpyCH4IV | ACGT | 6 cut(s) | 184, 523, 629, 700, 745, 1252 |
| HpyCH4V | TGCA | 7 cut(s) | 41, 71, 182, 494, 521, 674, 1108 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 605, 848, 1064, 1076, 1163 |
| HpyF3I | CTNAG | 1 cut(s) | 456 |
| HpySE526I | ACGT | 6 cut(s) | 184, 523, 629, 700, 745, 1252 |
| Hsp92II | CATG | 2 cut(s) | 938, 1126 |
| HspAI | GCGC | 1 cut(s) | 908 |
| KspI | CCGCGG | 1 cut(s) | 682 |
| Kzo9I | GATC | 6 cut(s) | 94, 106, 534, 624, 764, 1096 |
| LguI | GCTCTTC | 1 cut(s) | 606 |
| Lsp1109I | GCAGC | 1 cut(s) | 1079 |
| LweI | GCATC | 2 cut(s) | 875, 1141 |
| MaeI | CTAG | 1 cut(s) | 633 |
| MaeII | ACGT | 6 cut(s) | 184, 523, 629, 700, 745, 1252 |
| MaeIII | GTNAC | 4 cut(s) | 721, 964, 970, 1207 |
| MalI | GATC | 6 cut(s) | 96, 108, 536, 626, 766, 1098 |
| MbiI | CCGCTC | 2 cut(s) | 822, 1058 |
| MboI | GATC | 6 cut(s) | 94, 106, 534, 624, 764, 1096 |
| MboII | GAAGA | 6 cut(s) | 116, 269, 290, 558, 593, 1050 |
| MfeI | CAATTG | 1 cut(s) | 310 |
| MflI | RGATCY | 2 cut(s) | 94, 764 |
| MhlI | GDGCHC | 1 cut(s) | 369 |
| MlyI | GAGTC | 1 cut(s) | 259 |
| MnlI | CCTC | 6 cut(s) | 85, 166, 172, 563, 1015, 1034 |
| MseI | TTAA | 6 cut(s) | 251, 404, 452, 792, 1160, 1190 |
| MspA1I | CMGCKG | 2 cut(s) | 681, 1070 |
| MspI | CCGG | 4 cut(s) | 396, 798, 1011, 1136 |
| MspR9I | CCNGG | 3 cut(s) | 798, 1136, 1137 |
| MunI | CAATTG | 1 cut(s) | 310 |
| Mva1269I | GAATGC | 1 cut(s) | 910 |
| MvnI | CGCG | 2 cut(s) | 681, 910 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 605, 848, 1064, 1076, 1163 |
| NciI | CCSGG | 3 cut(s) | 798, 1136, 1137 |
| NdeII | GATC | 6 cut(s) | 94, 106, 534, 624, 764, 1096 |
| NlaIII | CATG | 2 cut(s) | 938, 1126 |
| NlaIV | GGNNCC | 2 cut(s) | 368, 1238 |
| NmuCI | GTSAC | 1 cut(s) | 964 |
| NspV | TTCGAA | 1 cut(s) | 902 |
| PagI | TCATGA | 1 cut(s) | 1122 |
| PciSI | GCTCTTC | 1 cut(s) | 606 |
| PctI | GAATGC | 1 cut(s) | 910 |
| PfeI | GAWTC | 5 cut(s) | 193, 204, 214, 237, 1023 |
| PkrI | GCNGC | 7 cut(s) | 654, 680, 865, 1057, 1069, 1156, 1221 |
| PleI | GAGTC | 1 cut(s) | 259 |
| PmaCI | CACGTG | 1 cut(s) | 524 |
| PmlI | CACGTG | 1 cut(s) | 524 |
| PpsI | GAGTC | 1 cut(s) | 259 |
| Ppu21I | YACGTR | 4 cut(s) | 185, 524, 701, 746 |
| PshBI | ATTAAT | 1 cut(s) | 251 |
| PspCI | CACGTG | 1 cut(s) | 524 |
| PspN4I | GGNNCC | 2 cut(s) | 368, 1238 |
| PspPI | GGNCC | 3 cut(s) | 1002, 1133, 1236 |
| PsuI | RGATCY | 2 cut(s) | 94, 764 |
| RsaI | GTAC | 9 cut(s) | 141, 297, 469, 486, 699, 981, 1015, 1033, 1087 |
| RsaNI | GTAC | 9 cut(s) | 140, 296, 468, 485, 698, 980, 1014, 1032, 1086 |
| SacII | CCGCGG | 1 cut(s) | 682 |
| SapI | GCTCTTC | 1 cut(s) | 606 |
| SaqAI | TTAA | 6 cut(s) | 251, 404, 452, 792, 1160, 1190 |
| SatI | GCNGC | 7 cut(s) | 653, 679, 864, 1056, 1068, 1155, 1220 |
| Sau3AI | GATC | 6 cut(s) | 94, 106, 534, 624, 764, 1096 |
| Sau96I | GGNCC | 3 cut(s) | 1002, 1133, 1236 |
| SchI | GAGTC | 1 cut(s) | 259 |
| ScrFI | CCNGG | 3 cut(s) | 798, 1136, 1137 |
| SduI | GDGCHC | 1 cut(s) | 369 |
| SfaNI | GCATC | 2 cut(s) | 875, 1141 |
| SfcI | CTRYAG | 2 cut(s) | 735, 1231 |
| Sfr303I | CCGCGG | 1 cut(s) | 682 |
| SfuI | TTCGAA | 1 cut(s) | 902 |
| SgrBI | CCGCGG | 1 cut(s) | 682 |
| SinI | GGWCC | 1 cut(s) | 1002 |
| SmaI | CCCGGG | 1 cut(s) | 1137 |
| SnaBI | TACGTA | 1 cut(s) | 701 |
| SspI | AATATT | 2 cut(s) | 376, 776 |
| SspMI | CTAG | 1 cut(s) | 633 |
| StyD4I | CCNGG | 3 cut(s) | 796, 1134, 1135 |
| TaaI | ACNGT | 4 cut(s) | 288, 727, 970, 1090 |
| TaiI | ACGT | 6 cut(s) | 187, 526, 632, 703, 748, 1255 |
| TaqI | TCGA | 8 cut(s) | 171, 207, 276, 504, 528, 568, 902, 988 |
| TatI | WGTACW | 3 cut(s) | 139, 295, 484 |
| TauI | GCSGC | 6 cut(s) | 655, 681, 866, 1058, 1157, 1222 |
| TfiI | GAWTC | 5 cut(s) | 193, 204, 214, 237, 1023 |
| Tru1I | TTAA | 6 cut(s) | 251, 404, 452, 792, 1160, 1190 |
| Tru9I | TTAA | 6 cut(s) | 251, 404, 452, 792, 1160, 1190 |
| TscAI | CASTG | 1 cut(s) | 1095 |
| TseFI | GTSAC | 1 cut(s) | 964 |
| TseI | GCWGC | 1 cut(s) | 1067 |
| Tsp45I | GTSAC | 1 cut(s) | 964 |
| TspDTI | ATGAA | 7 cut(s) | 408, 449, 566, 828, 883, 923, 1186 |
| TspGWI | ACGGA | 1 cut(s) | 522 |
| TspMI | CCCGGG | 1 cut(s) | 1135 |
| TspRI | CASTG | 1 cut(s) | 1095 |
| VpaK11BI | GGWCC | 1 cut(s) | 1002 |
| VspI | ATTAAT | 1 cut(s) | 251 |
| XapI | RAATTY | 2 cut(s) | 386, 477 |
| XbaI | TCTAGA | 1 cut(s) | 632 |
| XmaI | CCCGGG | 1 cut(s) | 1135 |
| XspI | CTAG | 1 cut(s) | 633 |