AT2G28870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015384
Physical Location & Seq
Reverse (-)
12394067 .. 12395017
951 bp
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UTR
Exon/CDS
Intron
AT2G28870.1

Sequence Viewer

Length: 471 bp
ATGGGTTTCTCCGACGCTGGAATTTACCTCTCCGACCCAAACAATCTCTGCCAAACCGAACTAGGTTTCTTTCATGAACCATCTCTAGGGTTTTCAGACCAGAGCGATCCACAAAACGAGTTCCACATCACTCCTCCTATATATCAAGAATTACAAGATCAGGATCTTGAACCTAAATCCCAAGAGACGAATAATTGCTCACGCAAAGAAGGAGCAACCGTCAAGAAAGAAGAAGAAGAAGAAGACGATTATTGTAAAACTCCGACTCGTTCAGACCAGATTCTCTCGGCGATGCCAAGAATTTGTCCACCGGCGCCTAGGAAACCTAAAAGAGTCCCGTCGAGAAGCCTTAAGGTTAGAAATTCATATAGAAGCAAGAGAATGATCATTCTAAATGTTTCTAGAGAGATTGATTGTTTGTTTAATCCAACATCACTATGTAACAAAATTAAGAAAGCCAGATACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.93

Weight (kDa)

6.73

Isoelectric Point (pI)

66.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28870 AT5G02420
fragaria_vesca FvH4_6g13950
malus_domestica MD12G1140600.v1.1
prunus_persica Prupe.6G254000_v2.0.a1
pyrus_communis pycom04g11420 pycom12g13560
rosa_chinensis RchiOBHm_Chr3g0466771
rosa_laevigata RLG00000024554
rosa_roxburghii Rroxscaffold_6G00414190
rosa_rugosa Rorug03G0083800
rosa_samantha Rh3AG130900 Rh3BG151900 Rh3CG151800 Rh3DG152600
rosa_wichuraiana Rw3G012370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 313
AclWI GGATC 2 cut(s) 101, 171
AcsI RAATTY 3 cut(s) 21, 300, 361
AcyI GRCGYC 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 86
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 179
AlwI GGATC 2 cut(s) 101, 171
ApoI RAATTY 3 cut(s) 21, 300, 361
AspA2I CCTAGG 1 cut(s) 317
AspLEI GCGC 1 cut(s) 316
AvrII CCTAGG 1 cut(s) 317
BanI GGYRCC 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 249
BccI CCATC 1 cut(s) 88
BclI TGATCA 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 4 cut(s) 62, 86, 318, 402
BfoI RGCGCY 1 cut(s) 317
BfrI CTTAAG 1 cut(s) 350
BlnI CCTAGG 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 315
BmsI GCATC 1 cut(s) 282
BpiI GAAGAC 1 cut(s) 249
BsaBI GATNNNNATC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 317
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 317
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 123
BshNI GGYRCC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 320
Bsp143I GATC 4 cut(s) 106, 157, 163, 384
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 2 cut(s) 101, 171
BspT107I GGYRCC 1 cut(s) 313
BspTI CTTAAG 1 cut(s) 350
BsrFI RCCGGY 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 4 cut(s) 106, 157, 163, 384
BssNI GRCGYC 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 220
BstACI GRCGYC 1 cut(s) 314
BstAFI CTTAAG 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 4 cut(s) 109, 160, 166, 387
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 4 cut(s) 106, 157, 163, 384
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BtgZI GCGATG 1 cut(s) 305
CciI TCATGA 1 cut(s) 73
CfoI GCGC 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 310
CseI GACGC 1 cut(s) 23
CviAII CATG 1 cut(s) 74
CviJI RGCY 2 cut(s) 348, 458
CviKI_1 RGCY 2 cut(s) 348, 458
DinI GGCGCC 1 cut(s) 315
DpnI GATC 4 cut(s) 108, 159, 165, 386
DpnII GATC 4 cut(s) 106, 157, 163, 384
Eco130I CCWWGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 317
EgeI GGCGCC 1 cut(s) 315
EheI GGCGCC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 317
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 1 cut(s) 77
FaiI YATR 6 cut(s) 75, 140, 142, 367, 369, 439
FaqI GGGAC 1 cut(s) 320
FatI CATG 1 cut(s) 73
FbaI TGATCA 1 cut(s) 384
FspBI CTAG 4 cut(s) 62, 86, 318, 402
GlaI GCGC 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 317
HapII CCGG 1 cut(s) 311
HgaI GACGC 1 cut(s) 23
HhaI GCGC 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HinfI GANTC 3 cut(s) 265, 280, 333
HpaII CCGG 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 5 cut(s) 13, 34, 97, 264, 274
Hpy188III TCNNGA 7 cut(s) 74, 146, 161, 167, 223, 342, 402
Hpy8I GTNNAC 1 cut(s) 308
Hpy99I CGWCG 2 cut(s) 17, 343
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 220
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 1 cut(s) 314
KasI GGCGCC 1 cut(s) 313
Ksp22I TGATCA 1 cut(s) 384
Kzo9I GATC 4 cut(s) 106, 157, 163, 384
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 5 cut(s) 3, 113, 146, 290, 324
LweI GCATC 1 cut(s) 282
MaeI CTAG 4 cut(s) 62, 86, 318, 402
MaeIII GTNAC 1 cut(s) 440
MalI GATC 4 cut(s) 108, 159, 165, 386
MboI GATC 4 cut(s) 106, 157, 163, 384
MboII GAAGA 5 cut(s) 242, 245, 248, 251, 254
MflI RGATCY 1 cut(s) 163
MluCI AATT 6 cut(s) 21, 149, 193, 300, 361, 447
Mly113I GGCGCC 1 cut(s) 314
MlyI GAGTC 2 cut(s) 259, 342
MmeI TCCRAC 4 cut(s) 36, 57, 287, 452
MnlI CCTC 2 cut(s) 38, 144
MseI TTAA 3 cut(s) 351, 423, 450
MslI CAYNNNNRTG 1 cut(s) 436
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 1 cut(s) 311
NarI GGCGCC 1 cut(s) 314
NdeII GATC 4 cut(s) 106, 157, 163, 384
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 315
NmeAIII GCCGAG 1 cut(s) 266
PagI TCATGA 1 cut(s) 73
PfeI GAWTC 1 cut(s) 280
PleI GAGTC 2 cut(s) 259, 341
PluTI GGCGCC 1 cut(s) 317
PpsI GAGTC 2 cut(s) 259, 341
PspN4I GGNNCC 1 cut(s) 315
PsuI RGATCY 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 436
SaqAI TTAA 3 cut(s) 351, 423, 450
Sau3AI GATC 4 cut(s) 106, 157, 163, 384
SchI GAGTC 2 cut(s) 259, 342
SetI ASST 5 cut(s) 30, 67, 175, 328, 357
SfaNI GCATC 1 cut(s) 282
SfoI GGCGCC 1 cut(s) 315
SgrAI CRCCGGYG 1 cut(s) 310
SmiMI CAYNNNNRTG 1 cut(s) 436
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 6 cut(s) 21, 149, 193, 300, 361, 447
SspDI GGCGCC 1 cut(s) 313
SspMI CTAG 4 cut(s) 62, 86, 318, 402
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 341
TasI AATT 6 cut(s) 21, 149, 193, 300, 361, 447
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 3 cut(s) 351, 423, 450
Tru9I TTAA 3 cut(s) 351, 423, 450
TspDTI ATGAA 3 cut(s) 62, 90, 354
Vha464I CTTAAG 1 cut(s) 350
XapI RAATTY 3 cut(s) 21, 300, 361
XbaI TCTAGA 1 cut(s) 401
XmaJI CCTAGG 1 cut(s) 317
XspI CTAG 4 cut(s) 62, 86, 318, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.