Prupe.6G254000_v2.0.a1

cyclin-dependent protein kinase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015384
Physical Location & Seq
Reverse (-)
24731353 .. 24732106
754 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G254000.1

Sequence Viewer

Length: 588 bp
ATGCCTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTTCTCTTCAAATAAGCTCCAGGAAATTCCAAACCTATTAGGATTAGGAAAAGAAGATCCTTGTTTCCATCATGATCACGATGATCAAACCCAGAAACCCACGTTGGAAAATCCCGAACAGCCCTCGGATCACGATCATGCTCTCCATGATCACCCACAACAGGAACAACCCAAGAACGGCGCGGATCACATTGACACTCCCGCAAAGAAAAAACGCCGAACGACGGAGTCGGTTGAAGTAGAAGACGATGACGACGGATTCAAAACGCCGACGTCGCTGGAGCACAGAATCCCCCCGATGACAAAATGCCCGCCTGCGCCAAGAAAACCGCTGCGGAAGAGAAAGGTGGTGACGTCATCGTCGCCCAGTCGCAGAAGGATCCAATTCCATTTCGATCATCTGGACACAAAAGAACTGGAGGCATTCTTTGCGTCAAATTTTCTTCTCCAGGATTTGCGCGCCAAGATCAAGAAAGCCAAACGAGCTCATCGCGACGAAACCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.26

Weight (kDa)

7.88

Isoelectric Point (pI)

52.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28870 AT5G02420
fragaria_vesca FvH4_6g13950
malus_domestica MD12G1140600.v1.1
prunus_persica Prupe.6G254000_v2.0.a1
pyrus_communis pycom04g11420 pycom12g13560
rosa_chinensis RchiOBHm_Chr3g0466771
rosa_laevigata RLG00000024554
rosa_roxburghii Rroxscaffold_6G00414190
rosa_rugosa Rorug03G0083800
rosa_samantha Rh3AG130900 Rh3BG151900 Rh3CG151800 Rh3DG152600
rosa_wichuraiana Rw3G012370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 439
AatII GACGTC 2 cut(s) 356, 437
AccII CGCG 3 cut(s) 263, 540, 573
AciI CCGC 5 cut(s) 263, 282, 392, 410, 415
AclWI GGATC 5 cut(s) 131, 216, 273, 454, 467
AcsI RAATTY 2 cut(s) 105, 517
AcyI GRCGYC 2 cut(s) 353, 434
AfiI CCNNNNNNNGG 3 cut(s) 241, 257, 304
AgsI TTSAA 3 cut(s) 90, 317, 343
AjnI CCWGG 2 cut(s) 99, 528
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AluBI AGCT 2 cut(s) 97, 566
AluI AGCT 2 cut(s) 97, 566
Alw21I GWGCWC 2 cut(s) 366, 568
AlwI GGATC 5 cut(s) 131, 216, 273, 454, 467
ApeKI GCWGC 1 cut(s) 412
ApoI RAATTY 2 cut(s) 105, 517
AspLEI GCGC 4 cut(s) 263, 400, 540, 542
AsuC2I CCSGG 1 cut(s) 583
AsuHPI GGTGA 2 cut(s) 224, 442
BamHI GGATCC 1 cut(s) 459
BanII GRGCYC 1 cut(s) 568
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 2 cut(s) 366, 568
BbvI GCAGC 1 cut(s) 399
BccI CCATC 1 cut(s) 156
BceAI ACGGC 1 cut(s) 274
BciT130I CCWGG 2 cut(s) 101, 530
BclI TGATCA 3 cut(s) 154, 163, 229
BcnI CCSGG 1 cut(s) 583
BisI GCNGC 1 cut(s) 413
BlsI GCNGC 1 cut(s) 414
Bme1390I CCNGG 3 cut(s) 101, 530, 583
BmiI GGNNCC 1 cut(s) 461
BmrFI CCNGG 3 cut(s) 101, 530, 583
BmrI ACTGGG 1 cut(s) 441
BmuI ACTGGG 1 cut(s) 441
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 4 cut(s) 83, 380, 512, 518
BpuMI CCSGG 1 cut(s) 583
BsaBI GATNNNNATC 1 cut(s) 213
BsaHI GRCGYC 2 cut(s) 353, 434
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 257, 304
Bse1I ACTGG 2 cut(s) 447, 501
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 2 cut(s) 101, 530
BseDI CCNNGG 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 3 cut(s) 241, 257, 304
BseNI ACTGG 2 cut(s) 447, 501
BsePI GCGCGC 1 cut(s) 538
BseXI GCAGC 1 cut(s) 399
Bsh1236I CGCG 3 cut(s) 263, 540, 573
BsiHKAI GWGCWC 2 cut(s) 366, 568
BsiSI CCGG 1 cut(s) 583
BslI CCNNNNNNNGG 3 cut(s) 241, 257, 304
BsmI GAATGC 1 cut(s) 503
Bsp1286I GDGCHC 2 cut(s) 366, 568
Bsp68I TCGCGA 1 cut(s) 573
BspACI CCGC 5 cut(s) 263, 282, 392, 410, 415
BspFNI CGCG 3 cut(s) 263, 540, 573
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 461
BspPI GGATC 5 cut(s) 131, 216, 273, 454, 467
BsrI ACTGG 2 cut(s) 447, 501
BssECI CCNNGG 1 cut(s) 204
BssHII GCGCGC 1 cut(s) 538
BssNI GRCGYC 2 cut(s) 353, 434
Bst2UI CCWGG 2 cut(s) 101, 530
Bst6I CTCTTC 2 cut(s) 91, 413
BstACI GRCGYC 2 cut(s) 353, 434
BstAPI GCANNNNNTGC 1 cut(s) 509
BstC8I GCNNGC 3 cut(s) 392, 396, 540
BstFNI CGCG 3 cut(s) 263, 540, 573
BstHHI GCGC 4 cut(s) 263, 400, 540, 542
BstMWI GCNNNNNNNGC 3 cut(s) 355, 509, 563
BstNI CCWGG 2 cut(s) 101, 530
BstSCI CCNGG 3 cut(s) 99, 528, 581
BstUI CGCG 3 cut(s) 263, 540, 573
BstV1I GCAGC 1 cut(s) 399
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 2 cut(s) 136, 459
BstYI RGATCY 2 cut(s) 136, 459
BtgZI GCGATG 1 cut(s) 554
BtuMI TCGCGA 1 cut(s) 573
Cac8I GCNNGC 3 cut(s) 392, 396, 540
CciI TCATGA 1 cut(s) 151
CfoI GCGC 4 cut(s) 263, 400, 540, 542
CseI GACGC 1 cut(s) 501
CviAII CATG 3 cut(s) 152, 218, 227
CviJI RGCY 4 cut(s) 97, 202, 557, 566
CviKI_1 RGCY 4 cut(s) 97, 202, 557, 566
DrdI GACNNNNNNGTC 1 cut(s) 439
DseDI GACNNNNNNGTC 1 cut(s) 439
Eam1104I CTCTTC 2 cut(s) 91, 413
EarI CTCTTC 2 cut(s) 91, 413
Ecl136II GAGCTC 1 cut(s) 566
Eco24I GRGCYC 1 cut(s) 568
Eco53kI GAGCTC 1 cut(s) 566
EcoICRI GAGCTC 1 cut(s) 566
EcoRII CCWGG 2 cut(s) 99, 528
EcoT38I GRGCYC 1 cut(s) 568
FaeI CATG 3 cut(s) 155, 221, 230
FaiI YATR 3 cut(s) 153, 219, 228
FatI CATG 3 cut(s) 151, 217, 226
FauI CCCGC 2 cut(s) 289, 399
FbaI TGATCA 3 cut(s) 154, 163, 229
Fnu4HI GCNGC 1 cut(s) 413
FriOI GRGCYC 1 cut(s) 568
Fsp4HI GCNGC 1 cut(s) 413
GlaI GCGC 4 cut(s) 262, 399, 539, 541
GluI GCNGC 1 cut(s) 413
GsuI CTGGAG 4 cut(s) 83, 380, 512, 518
HapII CCGG 1 cut(s) 583
HgaI GACGC 1 cut(s) 501
HhaI GCGC 4 cut(s) 263, 400, 540, 542
Hin1I GRCGYC 2 cut(s) 353, 434
Hin1II CATG 3 cut(s) 155, 221, 230
Hin6I GCGC 4 cut(s) 261, 398, 538, 540
HinP1I GCGC 4 cut(s) 261, 398, 538, 540
HinfI GANTC 3 cut(s) 308, 339, 369
HpaII CCGG 1 cut(s) 583
HphI GGTGA 2 cut(s) 224, 442
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 7 cut(s) 152, 158, 194, 212, 482, 550, 572
Hpy99I CGWCG 6 cut(s) 307, 338, 355, 358, 445, 578
HpyAV CCTTC 1 cut(s) 450
HpyCH4IV ACGT 3 cut(s) 182, 353, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 355, 509, 563
HpySE526I ACGT 3 cut(s) 182, 353, 434
Hsp92I GRCGYC 2 cut(s) 353, 434
Hsp92II CATG 3 cut(s) 155, 221, 230
HspAI GCGC 4 cut(s) 261, 398, 538, 540
Ksp22I TGATCA 3 cut(s) 154, 163, 229
LmnI GCTCC 2 cut(s) 102, 361
Lsp1109I GCAGC 1 cut(s) 399
MaeII ACGT 3 cut(s) 182, 353, 434
MaeIII GTNAC 1 cut(s) 430
MboII GAAGA 5 cut(s) 78, 146, 335, 430, 515
MflI RGATCY 2 cut(s) 136, 459
MhlI GDGCHC 2 cut(s) 366, 568
MluCI AATT 3 cut(s) 105, 464, 517
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 2 cut(s) 214, 493
MslI CAYNNNNRTG 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 1 cut(s) 583
MspR9I CCNGG 3 cut(s) 101, 530, 583
Mva1269I GAATGC 1 cut(s) 503
MvaI CCWGG 2 cut(s) 101, 530
MvnI CGCG 3 cut(s) 263, 540, 573
MwoI GCNNNNNNNGC 3 cut(s) 355, 509, 563
NciI CCSGG 1 cut(s) 583
NlaIII CATG 3 cut(s) 155, 221, 230
NlaIV GGNNCC 1 cut(s) 461
NmuCI GTSAC 1 cut(s) 430
NruI TCGCGA 1 cut(s) 573
PagI TCATGA 1 cut(s) 151
PauI GCGCGC 1 cut(s) 538
PctI GAATGC 1 cut(s) 503
PfeI GAWTC 2 cut(s) 339, 369
PflFI GACNNNGTC 1 cut(s) 307
PfoI TCCNGGA 2 cut(s) 99, 528
PkrI GCNGC 1 cut(s) 414
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 568
Psp6I CCWGG 2 cut(s) 99, 528
PspGI CCWGG 2 cut(s) 99, 528
PspN4I GGNNCC 1 cut(s) 461
PsuI RGATCY 2 cut(s) 136, 459
PsyI GACNNNGTC 1 cut(s) 307
PteI GCGCGC 1 cut(s) 538
RruI TCGCGA 1 cut(s) 573
RseI CAYNNNNRTG 1 cut(s) 216
SacI GAGCTC 1 cut(s) 568
SatI GCNGC 1 cut(s) 413
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 3 cut(s) 101, 530, 583
SduI GDGCHC 2 cut(s) 366, 568
SetI ASST 7 cut(s) 99, 117, 185, 356, 429, 437, 568
SmiMI CAYNNNNRTG 1 cut(s) 216
Sse9I AATT 3 cut(s) 105, 464, 517
SsiI CCGC 5 cut(s) 263, 282, 392, 410, 415
SstI GAGCTC 1 cut(s) 568
StyD4I CCNGG 3 cut(s) 99, 528, 581
TaiI ACGT 3 cut(s) 185, 356, 437
TaqI TCGA 1 cut(s) 474
TasI AATT 3 cut(s) 105, 464, 517
TfiI GAWTC 2 cut(s) 339, 369
TseFI GTSAC 1 cut(s) 430
TseI GCWGC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 430
TspGWI ACGGA 2 cut(s) 320, 351
Tth111I GACNNNGTC 1 cut(s) 307
XapI RAATTY 2 cut(s) 105, 517
ZraI GACGTC 2 cut(s) 354, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.