FvH4_6g13950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015384
Physical Location & Seq
Forward (+)
8553401 .. 8554616
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13950.t1

Sequence Viewer

Length: 396 bp
ATGGATTCCGTTCGACCGGACCCGATATCCGTCAGCCCGGATCGTCTTCTTCCCGAAGACGACAAGATCACGTTCGAAATTTCCAAGAAAGAACAAGCTGCAGGACCACCCGACACGTCGCCGTCTTCGTCACTCACAGAGGAATCCGGCACTGAAAACAACGCCGTGGACGACGACGACAACGACGGTTTCAGGACGCCGGTGAACCAAAAAATCCCCGTGATCACTGAATGCCCGCCTGCACCGCGAAAGACGAGAATGCCCCTGCGGAAACGAAAAGCGCTTAATTCTCCGATGAGTTCAAGGAAGAGAATCCAGGTTAATCTCTCGGAAGAAGAATTCGACGCTCTGTTTCCGTACGATTTTCGCGGCGAGATCAAGAAAGGCGCCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.6

Weight (kDa)

4.97

Isoelectric Point (pI)

72.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28870 AT5G02420
fragaria_vesca FvH4_6g13950
malus_domestica MD12G1140600.v1.1
prunus_persica Prupe.6G254000_v2.0.a1
pyrus_communis pycom04g11420 pycom12g13560
rosa_chinensis RchiOBHm_Chr3g0466771
rosa_laevigata RLG00000024554
rosa_roxburghii Rroxscaffold_6G00414190
rosa_rugosa Rorug03G0083800
rosa_samantha Rh3AG130900 Rh3BG151900 Rh3CG151800 Rh3DG152600
rosa_wichuraiana Rw3G012370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 386
AccII CGCG 2 cut(s) 247, 369
AciI CCGC 4 cut(s) 236, 245, 268, 369
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 2 cut(s) 78, 338
AcyI GRCGYC 2 cut(s) 197, 387
AfaI GTAC 1 cut(s) 359
AfeI AGCGCT 1 cut(s) 282
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 1 cut(s) 303
AjiI CACGTC 1 cut(s) 117
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
AlwI GGATC 1 cut(s) 48
Aor51HI AGCGCT 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 2 cut(s) 78, 338
AspLEI GCGC 2 cut(s) 283, 389
AspS9I GGNCC 2 cut(s) 19, 104
AsuC2I CCSGG 1 cut(s) 38
AsuHPI GGTGA 1 cut(s) 214
AsuII TTCGAA 1 cut(s) 75
AvaII GGWCC 2 cut(s) 19, 104
BanI GGYRCC 1 cut(s) 386
BbsI GAAGAC 3 cut(s) 38, 63, 117
BbvI GCAGC 1 cut(s) 85
BceAI ACGGC 3 cut(s) 106, 149, 374
BciT130I CCWGG 1 cut(s) 317
BclI TGATCA 1 cut(s) 222
BcnI CCSGG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 2 cut(s) 284, 390
BisI GCNGC 2 cut(s) 99, 370
BlsI GCNGC 2 cut(s) 100, 371
Bme1390I CCNGG 2 cut(s) 38, 317
Bme18I GGWCC 2 cut(s) 19, 104
BmgBI CACGTC 1 cut(s) 117
BmgT120I GGNCC 2 cut(s) 19, 104
BmiI GGNNCC 2 cut(s) 21, 388
BmrFI CCNGG 2 cut(s) 38, 317
BpiI GAAGAC 3 cut(s) 38, 63, 117
Bpu14I TTCGAA 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 38
BsaHI GRCGYC 2 cut(s) 197, 387
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 16
Bse118I RCCGGY 1 cut(s) 199
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 225
Bsh1236I CGCG 2 cut(s) 247, 369
Bsh1285I CGRYCG 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 386
BsiEI CGRYCG 1 cut(s) 17
BsiSI CCGG 4 cut(s) 17, 38, 147, 200
BsiWI CGTACG 1 cut(s) 357
BsmI GAATGC 2 cut(s) 236, 264
Bsp119I TTCGAA 1 cut(s) 75
Bsp143I GATC 4 cut(s) 40, 66, 222, 375
BspACI CCGC 4 cut(s) 236, 245, 268, 369
BspFNI CGCG 2 cut(s) 247, 369
BspLI GGNNCC 2 cut(s) 21, 388
BspMAI CTGCAG 1 cut(s) 103
BspPI GGATC 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 386
BsrFI RCCGGY 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 4 cut(s) 40, 66, 222, 375
BssNI GRCGYC 2 cut(s) 197, 387
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 302
BstACI GRCGYC 2 cut(s) 197, 387
BstBI TTCGAA 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 236, 240
BstDSI CCRYGG 1 cut(s) 165
BstFNI CGCG 2 cut(s) 247, 369
BstH2I RGCGCY 2 cut(s) 284, 390
BstHHI GCGC 2 cut(s) 283, 389
BstKTI GATC 4 cut(s) 43, 69, 225, 378
BstMBI GATC 4 cut(s) 40, 66, 222, 375
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 36, 315
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 2 cut(s) 247, 369
BstV1I GCAGC 1 cut(s) 85
BstV2I GAAGAC 3 cut(s) 38, 63, 117
BtgI CCRYGG 1 cut(s) 165
BtrI CACGTC 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 150, 225
Cac8I GCNNGC 2 cut(s) 236, 240
CfoI GCGC 2 cut(s) 283, 389
Cfr10I RCCGGY 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 19, 104
CseI GACGC 2 cut(s) 205, 353
Csp6I GTAC 1 cut(s) 358
CviJI RGCY 2 cut(s) 36, 98
CviKI_1 RGCY 2 cut(s) 36, 98
CviQI GTAC 1 cut(s) 358
DinI GGCGCC 1 cut(s) 388
DpnI GATC 4 cut(s) 42, 68, 224, 377
DpnII GATC 4 cut(s) 40, 66, 222, 375
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco32I GATATC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 19, 104
Eco47III AGCGCT 1 cut(s) 282
EcoRI GAATTC 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 315
EcoRV GATATC 1 cut(s) 27
EgeI GGCGCC 1 cut(s) 388
EheI GGCGCC 1 cut(s) 388
FauI CCCGC 1 cut(s) 243
FbaI TGATCA 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 99, 370
Fsp4HI GCNGC 2 cut(s) 99, 370
GlaI GCGC 2 cut(s) 282, 388
GluI GCNGC 2 cut(s) 99, 370
HaeII RGCGCY 2 cut(s) 284, 390
HapII CCGG 4 cut(s) 17, 38, 147, 200
HgaI GACGC 2 cut(s) 205, 353
HhaI GCGC 2 cut(s) 283, 389
Hin1I GRCGYC 2 cut(s) 197, 387
Hin6I GCGC 2 cut(s) 281, 387
HinP1I GCGC 2 cut(s) 281, 387
HinfI GANTC 3 cut(s) 5, 143, 312
HpaII CCGG 4 cut(s) 17, 38, 147, 200
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 169, 205
Hpy188I TCNGA 3 cut(s) 294, 331, 395
Hpy188III TCNNGA 3 cut(s) 53, 193, 379
Hpy8I GTNNAC 2 cut(s) 169, 205
Hpy99I CGWCG 5 cut(s) 121, 176, 179, 188, 347
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 2 cut(s) 71, 116
HpyCH4V TGCA 2 cut(s) 101, 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpySE526I ACGT 2 cut(s) 71, 116
Hsp92I GRCGYC 2 cut(s) 197, 387
HspAI GCGC 2 cut(s) 281, 387
KasI GGCGCC 1 cut(s) 386
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 4 cut(s) 40, 66, 222, 375
Lsp1109I GCAGC 1 cut(s) 85
MaeII ACGT 2 cut(s) 71, 116
MaeIII GTNAC 1 cut(s) 129
MalI GATC 4 cut(s) 42, 68, 224, 377
MboI GATC 4 cut(s) 40, 66, 222, 375
MboII GAAGA 7 cut(s) 38, 41, 68, 117, 319, 344, 347
MluCI AATT 3 cut(s) 78, 286, 338
Mly113I GGCGCC 1 cut(s) 387
MnlI CCTC 1 cut(s) 133
MseI TTAA 2 cut(s) 285, 321
MspI CCGG 4 cut(s) 17, 38, 147, 200
MspR9I CCNGG 2 cut(s) 38, 317
Mva1269I GAATGC 2 cut(s) 236, 264
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 2 cut(s) 247, 369
MwoI GCNNNNNNNGC 1 cut(s) 244
NarI GGCGCC 1 cut(s) 387
NciI CCSGG 1 cut(s) 38
NdeII GATC 4 cut(s) 40, 66, 222, 375
NlaIV GGNNCC 2 cut(s) 21, 388
NmuCI GTSAC 1 cut(s) 129
NspV TTCGAA 1 cut(s) 75
PcsI WCGNNNNNNNCGW 3 cut(s) 125, 168, 180
PctI GAATGC 2 cut(s) 236, 264
PfeI GAWTC 3 cut(s) 5, 143, 312
Pfl23II CGTACG 1 cut(s) 357
PkrI GCNGC 2 cut(s) 100, 371
PluTI GGCGCC 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspLI CGTACG 1 cut(s) 357
PspN4I GGNNCC 2 cut(s) 21, 388
PspPI GGNCC 2 cut(s) 19, 104
PstI CTGCAG 1 cut(s) 103
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SaqAI TTAA 2 cut(s) 285, 321
SatI GCNGC 2 cut(s) 99, 370
Sau3AI GATC 4 cut(s) 40, 66, 222, 375
Sau96I GGNCC 2 cut(s) 19, 104
ScrFI CCNGG 2 cut(s) 38, 317
SetI ASST 4 cut(s) 74, 100, 119, 321
SfcI CTRYAG 1 cut(s) 99
SfoI GGCGCC 1 cut(s) 388
SfuI TTCGAA 1 cut(s) 75
SgrAI CRCCGGYG 1 cut(s) 199
SinI GGWCC 2 cut(s) 19, 104
Sse9I AATT 3 cut(s) 78, 286, 338
SsiI CCGC 4 cut(s) 236, 245, 268, 369
SspDI GGCGCC 1 cut(s) 386
StyD4I CCNGG 2 cut(s) 36, 315
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 2 cut(s) 74, 119
TaqI TCGA 3 cut(s) 13, 75, 342
TasI AATT 3 cut(s) 78, 286, 338
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 3 cut(s) 5, 143, 312
Tru1I TTAA 2 cut(s) 285, 321
Tru9I TTAA 2 cut(s) 285, 321
TscAI CASTG 2 cut(s) 157, 232
TseFI GTSAC 1 cut(s) 129
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 129
TspGWI ACGGA 2 cut(s) 19, 345
TspRI CASTG 2 cut(s) 157, 232
VpaK11BI GGWCC 2 cut(s) 19, 104
XapI RAATTY 2 cut(s) 78, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.