RchiOBHm_Chr3g0466771

cyclin-dependent protein kinase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015384
Physical Location & Seq
Forward (+)
13146747 .. 13147804
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43280

Sequence Viewer

Length: 441 bp
ATGGATTCCAAACAACCCGACCCGAAATCCATTAACCCTTCGGATCCCAATCGTCTTCTTCCCGAAGACGACAGGATCAAGCTCGAAATTTCTAAGACGGAAGATGGTGGCAAGAAAGGACAAGCAGGACCACCCGAAACTTCGTCGTCCTCGTCAGTCACAGAGGAATCCGGCAGCGAAAAAGTCGTAGTGGAAGACGACGACAACGACGGTTTCAGAACGCCGGTGAATCACAGAATTCCCGTGATCACAGAGTGCCCGCCTGCACCGAAAAAGACGAGAATACCCCTGCGGAAACGAAAAGCGCTTAATTCGCCGAGCGCTTCTTCTCGCAAGAGAATCCAGATTATGCTCTCGGAAGAAGAATTCGACGCGCTGTTTCCGCCGCCGTACGATTTTCGAGGCCAGATCAAGAAAGCCAGCCCAGATGGCGCCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.05

Weight (kDa)

5.93

Isoelectric Point (pI)

71.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28870 AT5G02420
fragaria_vesca FvH4_6g13950
malus_domestica MD12G1140600.v1.1
prunus_persica Prupe.6G254000_v2.0.a1
pyrus_communis pycom04g11420 pycom12g13560
rosa_chinensis RchiOBHm_Chr3g0466771
rosa_laevigata RLG00000024554
rosa_roxburghii Rroxscaffold_6G00414190
rosa_rugosa Rorug03G0083800
rosa_samantha Rh3AG130900 Rh3BG151900 Rh3CG151800 Rh3DG152600
rosa_wichuraiana Rw3G012370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 431
AccII CGCG 1 cut(s) 374
AciI CCGC 4 cut(s) 260, 292, 383, 386
AclWI GGATC 3 cut(s) 38, 51, 83
AcsI RAATTY 3 cut(s) 87, 237, 365
AcyI GRCGYC 1 cut(s) 432
AdeI CACNNNGTG 1 cut(s) 255
AfaI GTAC 1 cut(s) 392
AfeI AGCGCT 2 cut(s) 306, 322
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
AlwI GGATC 3 cut(s) 38, 51, 83
Aor51HI AGCGCT 2 cut(s) 306, 322
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 3 cut(s) 87, 237, 365
AspLEI GCGC 4 cut(s) 307, 323, 376, 434
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 238
AvaII GGWCC 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 260
BamHI GGATCC 1 cut(s) 43
BanI GGYRCC 1 cut(s) 431
BbsI GAAGAC 3 cut(s) 47, 72, 201
BbvI GCAGC 1 cut(s) 186
BccI CCATC 2 cut(s) 98, 422
BceAI ACGGC 2 cut(s) 373, 419
BclI TGATCA 1 cut(s) 246
BfoI RGCGCY 3 cut(s) 308, 324, 435
BglI GCCNNNNNGGC 1 cut(s) 429
BisI GCNGC 2 cut(s) 175, 386
BlsI GCNGC 2 cut(s) 176, 387
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 45, 433
BpiI GAAGAC 3 cut(s) 47, 72, 201
BsaBI GATNNNNATC 1 cut(s) 48
BsaHI GRCGYC 1 cut(s) 432
Bse118I RCCGGY 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 48
BseJI GATNNNNATC 1 cut(s) 48
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 1 cut(s) 186
BsgI GTGCAG 1 cut(s) 249
Bsh1236I CGCG 1 cut(s) 374
BshFI GGCC 1 cut(s) 405
BshNI GGYRCC 1 cut(s) 431
BsiSI CCGG 2 cut(s) 171, 224
BsiWI CGTACG 1 cut(s) 390
BsnI GGCC 1 cut(s) 405
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 4 cut(s) 43, 75, 246, 408
BspACI CCGC 4 cut(s) 260, 292, 383, 386
BspANI GGCC 1 cut(s) 405
BspFNI CGCG 1 cut(s) 374
BspLI GGNNCC 2 cut(s) 45, 433
BspPI GGATC 3 cut(s) 38, 51, 83
BspT107I GGYRCC 1 cut(s) 431
BsrFI RCCGGY 1 cut(s) 223
BssAI RCCGGY 1 cut(s) 223
BssMI GATC 4 cut(s) 43, 75, 246, 408
BssNI GRCGYC 1 cut(s) 432
Bst4CI ACNGT 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 432
BstC8I GCNNGC 3 cut(s) 260, 264, 421
BstDEI CTNAG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 374
BstH2I RGCGCY 3 cut(s) 308, 324, 435
BstHHI GCGC 4 cut(s) 307, 323, 376, 434
BstKTI GATC 4 cut(s) 46, 78, 249, 411
BstMBI GATC 4 cut(s) 43, 75, 246, 408
BstMWI GCNNNNNNNGC 3 cut(s) 313, 382, 429
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 186
BstV2I GAAGAC 3 cut(s) 47, 72, 201
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuRI GGCC 1 cut(s) 405
Cac8I GCNNGC 3 cut(s) 260, 264, 421
CfoI GCGC 4 cut(s) 307, 323, 376, 434
Cfr10I RCCGGY 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 128
CseI GACGC 1 cut(s) 380
Csp6I GTAC 1 cut(s) 391
CviJI RGCY 4 cut(s) 82, 405, 419, 423
CviKI_1 RGCY 4 cut(s) 82, 405, 419, 423
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 1 cut(s) 93
DinI GGCGCC 1 cut(s) 433
DpnI GATC 4 cut(s) 45, 77, 248, 410
DpnII GATC 4 cut(s) 43, 75, 246, 408
DraIII CACNNNGTG 1 cut(s) 255
EciI GGCGGA 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 128
Eco47III AGCGCT 2 cut(s) 306, 322
EcoRI GAATTC 2 cut(s) 237, 365
EgeI GGCGCC 1 cut(s) 433
EheI GGCGCC 1 cut(s) 433
FaiI YATR 1 cut(s) 350
FauI CCCGC 1 cut(s) 267
FbaI TGATCA 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 175, 386
Fsp4HI GCNGC 2 cut(s) 175, 386
GlaI GCGC 4 cut(s) 306, 322, 375, 433
GluI GCNGC 2 cut(s) 175, 386
HaeII RGCGCY 3 cut(s) 308, 324, 435
HaeIII GGCC 1 cut(s) 405
HapII CCGG 2 cut(s) 171, 224
HgaI GACGC 1 cut(s) 380
HhaI GCGC 4 cut(s) 307, 323, 376, 434
Hin1I GRCGYC 1 cut(s) 432
Hin6I GCGC 4 cut(s) 305, 321, 374, 432
HinP1I GCGC 4 cut(s) 305, 321, 374, 432
HinfI GANTC 4 cut(s) 5, 167, 229, 339
HpaII CCGG 2 cut(s) 171, 224
HphI GGTGA 1 cut(s) 238
Hpy188I TCNGA 4 cut(s) 43, 218, 358, 440
Hpy188III TCNNGA 3 cut(s) 62, 343, 412
Hpy99I CGWCG 4 cut(s) 148, 203, 212, 374
HpyAV CCTTC 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 313, 382, 429
HpyF3I CTNAG 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 432
HspAI GCGC 4 cut(s) 305, 321, 374, 432
KasI GGCGCC 1 cut(s) 431
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 4 cut(s) 43, 75, 246, 408
LpnPI CCDG 9 cut(s) 58, 111, 184, 237, 276, 302, 356, 419, 433
Lsp1109I GCAGC 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 157
MalI GATC 4 cut(s) 45, 77, 248, 410
MboI GATC 4 cut(s) 43, 75, 246, 408
MboII GAAGA 8 cut(s) 47, 50, 77, 113, 206, 318, 371, 374
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 4 cut(s) 87, 237, 310, 365
Mly113I GGCGCC 1 cut(s) 432
MnlI CCTC 3 cut(s) 157, 160, 395
MseI TTAA 2 cut(s) 33, 309
MspI CCGG 2 cut(s) 171, 224
MvnI CGCG 1 cut(s) 374
MwoI GCNNNNNNNGC 3 cut(s) 313, 382, 429
NarI GGCGCC 1 cut(s) 432
NdeII GATC 4 cut(s) 43, 75, 246, 408
NlaIV GGNNCC 2 cut(s) 45, 433
NmeAIII GCCGAG 1 cut(s) 342
NmuCI GTSAC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 2 cut(s) 149, 204
PfeI GAWTC 4 cut(s) 5, 167, 229, 339
Pfl23II CGTACG 1 cut(s) 390
PkrI GCNGC 2 cut(s) 176, 387
PluTI GGCGCC 1 cut(s) 435
PspLI CGTACG 1 cut(s) 390
PspN4I GGNNCC 2 cut(s) 45, 433
PspPI GGNCC 1 cut(s) 128
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
SaqAI TTAA 2 cut(s) 33, 309
SatI GCNGC 2 cut(s) 175, 386
Sau3AI GATC 4 cut(s) 43, 75, 246, 408
Sau96I GGNCC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 260
SetI ASST 1 cut(s) 84
SfoI GGCGCC 1 cut(s) 433
SgrAI CRCCGGYG 1 cut(s) 223
SinI GGWCC 1 cut(s) 128
Sse9I AATT 4 cut(s) 87, 237, 310, 365
SsiI CCGC 4 cut(s) 260, 292, 383, 386
SspDI GGCGCC 1 cut(s) 431
TaaI ACNGT 1 cut(s) 212
TaqI TCGA 3 cut(s) 84, 369, 400
TasI AATT 4 cut(s) 87, 237, 310, 365
TauI GCSGC 1 cut(s) 388
TfiI GAWTC 4 cut(s) 5, 167, 229, 339
Tru1I TTAA 2 cut(s) 33, 309
Tru9I TTAA 2 cut(s) 33, 309
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 3 cut(s) 87, 237, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.