Rroxscaffold_6G00414190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015384
Physical Location & Seq
Reverse (-)
36469399 .. 36470438
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414190.1

Sequence Viewer

Length: 441 bp
ATGGATTCCAAGCAACCCGACCCGAAATCCGTTAACCCTTCGGATCCCAATCGTCTTCTTCCCGAAGACGACAGGATCAAGTTCGAAATTTCCAAGACGGAAGATGGTGCCAAGAAAGGACAAGCAGGACCACCCGAAAGTTCGTCGTCTTCGTCAGTCACAGAGGAATCCGGCAGCGAAAACGTAGTAGTGGAAGTCGACGACAACGACGGTTTCAGAACTCCGGTGAATCACAGAATTCCCGTGATCACAGAGTGCCCGCCCGCACCGAAAAAGACGAGAATACCCCTGCGGAAACGAAAAGCGCTTAATTCGCCAAGCGCTTCTTCTCGCAAGAGAATCCAGATTAAGCTCTCGGAAGAAGAATTCGACGCGCTGTTTCCGCCGCCGTTCGATATTCGCGGCAAGATCAAGAAAGCCAGCCCAGATGGCGCCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

15.99

Weight (kDa)

7.81

Isoelectric Point (pI)

71.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28870 AT5G02420
fragaria_vesca FvH4_6g13950
malus_domestica MD12G1140600.v1.1
prunus_persica Prupe.6G254000_v2.0.a1
pyrus_communis pycom04g11420 pycom12g13560
rosa_chinensis RchiOBHm_Chr3g0466771
rosa_laevigata RLG00000024554
rosa_roxburghii Rroxscaffold_6G00414190
rosa_rugosa Rorug03G0083800
rosa_samantha Rh3AG130900 Rh3BG151900 Rh3CG151800 Rh3DG152600
rosa_wichuraiana Rw3G012370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 107, 431
AccI GTMKAC 1 cut(s) 198
AccII CGCG 2 cut(s) 374, 402
AciI CCGC 6 cut(s) 260, 264, 292, 383, 386, 402
AclWI GGATC 3 cut(s) 38, 51, 83
AcsI RAATTY 3 cut(s) 87, 237, 365
AcyI GRCGYC 1 cut(s) 432
AdeI CACNNNGTG 1 cut(s) 255
AfeI AGCGCT 2 cut(s) 306, 322
AjuI GAANNNNNNNTTGG 2 cut(s) 310, 342
AluBI AGCT 1 cut(s) 352
AluI AGCT 1 cut(s) 352
AlwI GGATC 3 cut(s) 38, 51, 83
Aor51HI AGCGCT 2 cut(s) 306, 322
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 3 cut(s) 87, 237, 365
AspLEI GCGC 4 cut(s) 307, 323, 376, 434
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 238
AsuII TTCGAA 1 cut(s) 84
AvaII GGWCC 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 260
BamHI GGATCC 1 cut(s) 43
BanI GGYRCC 2 cut(s) 107, 431
BbsI GAAGAC 3 cut(s) 47, 72, 141
BbvI GCAGC 1 cut(s) 186
BccI CCATC 2 cut(s) 98, 422
BceAI ACGGC 2 cut(s) 373, 419
BclI TGATCA 1 cut(s) 246
BfoI RGCGCY 3 cut(s) 308, 324, 435
BglI GCCNNNNNGGC 1 cut(s) 429
BisI GCNGC 3 cut(s) 175, 386, 403
BlsI GCNGC 3 cut(s) 176, 387, 404
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 3 cut(s) 45, 109, 433
BpiI GAAGAC 3 cut(s) 47, 72, 141
Bpu14I TTCGAA 1 cut(s) 84
BsaBI GATNNNNATC 1 cut(s) 48
BsaHI GRCGYC 1 cut(s) 432
BsaWI WCCGGW 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 48
BseJI GATNNNNATC 1 cut(s) 48
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 1 cut(s) 186
Bsh1236I CGCG 2 cut(s) 374, 402
BshNI GGYRCC 2 cut(s) 107, 431
BsiSI CCGG 2 cut(s) 171, 224
Bsp119I TTCGAA 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 4 cut(s) 43, 75, 246, 408
BspACI CCGC 6 cut(s) 260, 264, 292, 383, 386, 402
BspFNI CGCG 2 cut(s) 374, 402
BspLI GGNNCC 3 cut(s) 45, 109, 433
BspPI GGATC 3 cut(s) 38, 51, 83
BspT104I TTCGAA 1 cut(s) 84
BspT107I GGYRCC 2 cut(s) 107, 431
BssMI GATC 4 cut(s) 43, 75, 246, 408
BssNI GRCGYC 1 cut(s) 432
Bst4CI ACNGT 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 432
BstBI TTCGAA 1 cut(s) 84
BstC8I GCNNGC 3 cut(s) 260, 264, 421
BstFNI CGCG 2 cut(s) 374, 402
BstH2I RGCGCY 3 cut(s) 308, 324, 435
BstHHI GCGC 4 cut(s) 307, 323, 376, 434
BstKTI GATC 4 cut(s) 46, 78, 249, 411
BstMBI GATC 4 cut(s) 43, 75, 246, 408
BstMWI GCNNNNNNNGC 3 cut(s) 313, 382, 429
BstSLI GKGCMC 1 cut(s) 260
BstUI CGCG 2 cut(s) 374, 402
BstV1I GCAGC 1 cut(s) 186
BstV2I GAAGAC 3 cut(s) 47, 72, 141
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
Cac8I GCNNGC 3 cut(s) 260, 264, 421
CfoI GCGC 4 cut(s) 307, 323, 376, 434
Cfr13I GGNCC 1 cut(s) 128
CseI GACGC 1 cut(s) 380
CviJI RGCY 3 cut(s) 352, 419, 423
CviKI_1 RGCY 3 cut(s) 352, 419, 423
DinI GGCGCC 1 cut(s) 433
DpnI GATC 4 cut(s) 45, 77, 248, 410
DpnII GATC 4 cut(s) 43, 75, 246, 408
DraIII CACNNNGTG 1 cut(s) 255
EciI GGCGGA 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 128
Eco47III AGCGCT 2 cut(s) 306, 322
EcoRI GAATTC 2 cut(s) 237, 365
EgeI GGCGCC 1 cut(s) 433
EheI GGCGCC 1 cut(s) 433
FalI AAGNNNNNCTT 2 cut(s) 310, 342
FauI CCCGC 2 cut(s) 267, 271
FbaI TGATCA 1 cut(s) 246
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 3 cut(s) 175, 386, 403
Fsp4HI GCNGC 3 cut(s) 175, 386, 403
GlaI GCGC 4 cut(s) 306, 322, 375, 433
GluI GCNGC 3 cut(s) 175, 386, 403
HaeII RGCGCY 3 cut(s) 308, 324, 435
HapII CCGG 2 cut(s) 171, 224
HgaI GACGC 1 cut(s) 380
HhaI GCGC 4 cut(s) 307, 323, 376, 434
Hin1I GRCGYC 1 cut(s) 432
Hin6I GCGC 4 cut(s) 305, 321, 374, 432
HinP1I GCGC 4 cut(s) 305, 321, 374, 432
HincII GTYRAC 2 cut(s) 34, 199
HindII GTYRAC 2 cut(s) 34, 199
HinfI GANTC 4 cut(s) 5, 167, 229, 339
HpaI GTTAAC 1 cut(s) 34
HpaII CCGG 2 cut(s) 171, 224
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 34, 199
Hpy188I TCNGA 4 cut(s) 43, 218, 358, 440
Hpy188III TCNNGA 3 cut(s) 62, 343, 412
Hpy8I GTNNAC 2 cut(s) 34, 199
Hpy99I CGWCG 4 cut(s) 148, 203, 212, 374
HpyAV CCTTC 1 cut(s) 48
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 3 cut(s) 313, 382, 429
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 432
HspAI GCGC 4 cut(s) 305, 321, 374, 432
KasI GGCGCC 1 cut(s) 431
Ksp22I TGATCA 1 cut(s) 246
KspAI GTTAAC 1 cut(s) 34
Kzo9I GATC 4 cut(s) 43, 75, 246, 408
LpnPI CCDG 7 cut(s) 58, 111, 184, 237, 302, 356, 433
Lsp1109I GCAGC 1 cut(s) 186
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 157
MalI GATC 4 cut(s) 45, 77, 248, 410
MboI GATC 4 cut(s) 43, 75, 246, 408
MboII GAAGA 8 cut(s) 47, 50, 77, 113, 141, 318, 371, 374
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 4 cut(s) 87, 237, 310, 365
Mly113I GGCGCC 1 cut(s) 432
MnlI CCTC 1 cut(s) 157
MseI TTAA 3 cut(s) 33, 309, 348
MspI CCGG 2 cut(s) 171, 224
MvnI CGCG 2 cut(s) 374, 402
MwoI GCNNNNNNNGC 3 cut(s) 313, 382, 429
NarI GGCGCC 1 cut(s) 432
NdeII GATC 4 cut(s) 43, 75, 246, 408
NlaIV GGNNCC 3 cut(s) 45, 109, 433
NmuCI GTSAC 1 cut(s) 157
NspV TTCGAA 1 cut(s) 84
PcsI WCGNNNNNNNCGW 2 cut(s) 149, 204
PfeI GAWTC 4 cut(s) 5, 167, 229, 339
PkrI GCNGC 3 cut(s) 176, 387, 404
PluTI GGCGCC 1 cut(s) 435
PspN4I GGNNCC 3 cut(s) 45, 109, 433
PspPI GGNCC 1 cut(s) 128
PsuI RGATCY 1 cut(s) 43
SalI GTCGAC 1 cut(s) 197
SaqAI TTAA 3 cut(s) 33, 309, 348
SatI GCNGC 3 cut(s) 175, 386, 403
Sau3AI GATC 4 cut(s) 43, 75, 246, 408
Sau96I GGNCC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 260
SetI ASST 2 cut(s) 186, 354
SfoI GGCGCC 1 cut(s) 433
SfuI TTCGAA 1 cut(s) 84
SinI GGWCC 1 cut(s) 128
Sse9I AATT 4 cut(s) 87, 237, 310, 365
SsiI CCGC 6 cut(s) 260, 264, 292, 383, 386, 402
SspDI GGCGCC 1 cut(s) 431
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 186
TaqI TCGA 4 cut(s) 84, 198, 369, 393
TasI AATT 4 cut(s) 87, 237, 310, 365
TauI GCSGC 2 cut(s) 388, 405
TfiI GAWTC 4 cut(s) 5, 167, 229, 339
Tru1I TTAA 3 cut(s) 33, 309, 348
Tru9I TTAA 3 cut(s) 33, 309, 348
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 157
TspGWI ACGGA 2 cut(s) 19, 113
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 3 cut(s) 87, 237, 365
XmiI GTMKAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.