Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009844

Physical Location & Seq

Genomic Coordinates Forward (+)

12697226 .. 12698291

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAGAGTATCTGGCGAATCGCGACGGGACAAGATCCGAGCCGTGAAGATTACGAAGGGATCGAGTTCTGGTCAAACCCTGAGCGTTCTGGTTGGCTCACAAAGCAAGGCGATTACATCAAAACCTGGCGTCGTCGTTGGTTCGTTCTCAAACGAGGGAAGCTTCTCTGGTTCAAAGATCAAGCCGCTGCTGGAATTCGTGGATCTACGCCGCGTGGTGTGATCTCCGTTGGTGATTGTCTCACCGTGAAAGGAGCTGAGGATGTTGTGAATAAGCCTTTTGCTTTTGAGCTATCTAGTGGTAGCTATACCATGTTCTTCATTGCTGATAATGAGAAGGAGAAAGAAGAGTGGATTAATTCGATTGGAAGATCGATTGTGCAACACTCGAGGTCTGTGACGGATTCTGAGGTTCTCGATTATGATCACAGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0032266 GO:0035091 GO:0043167 GO:0043168 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

145

Amino Acids

16.81

Weight (kDa)

6.75

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH	PF00169	28 - 126	5.2e-20	PH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29700
fragaria_vesca	FvH4_3g38390
malus_domestica	MD11G1076900.v1.1 MD11G1077100.v1.1
prunus_persica	Prupe.6G059100_v2.0.a1
pyrus_communis	pycom03g05840 pycom11g06480
rosa_chinensis	RchiOBHm_Chr5g0069011
rosa_laevigata	RLG00000036030
rosa_multiflora	Rmu_sc0000853.1_g000005 Rmu_sc0000936.1_g000003 Rmu_sc0006282.1_g000036
rosa_roxburghii	Rroxscaffold_1G00011710
rosa_rugosa	Rorug05G0395600
rosa_samantha	Rh2BG536900 Rh2DG545700 Rh5BG471400 Rh5CG493900 Rh5DG484100
rosa_wichuraiana	Rw0G006110 Rw5G042250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	23, 214
AciI	CCGC	3 cut(s)	186, 212, 433
AclWI	GGATC	3 cut(s)	29, 68, 211
AcsI	RAATTY	1 cut(s)	195
AcyI	GRCGYC	1 cut(s)	130
AgsI	TTSAA	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	4 cut(s)	163, 257, 292, 306
AluI	AGCT	4 cut(s)	163, 257, 292, 306
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	3 cut(s)	29, 68, 211
Ama87I	CYCGRG	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	195
AseI	ATTAAT	1 cut(s)	357
AsuHPI	GGTGA	2 cut(s)	235, 245
AvaI	CYCGRG	1 cut(s)	388
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	175
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	127
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	297
BisI	GCNGC	3 cut(s)	186, 189, 212
BlsI	GCNGC	3 cut(s)	187, 190, 213
Bme1390I	CCNGG	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	388
BmrFI	CCNGG	1 cut(s)	127
Bpu10I	CCTNAGC	2 cut(s)	81, 258
Bsa29I	ATCGAT	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	127
BseCI	ATCGAT	1 cut(s)	374
BseGI	GGATG	1 cut(s)	268
BseJI	GATNNNNATC	1 cut(s)	423
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	3 cut(s)	72, 249, 399
BseXI	GCAGC	1 cut(s)	175
Bsh1236I	CGCG	2 cut(s)	23, 214
BshVI	ATCGAT	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	388
BslFI	GGGAC	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	388
Bsp143I	GATC	7 cut(s)	34, 60, 178, 203, 222, 371, 424
Bsp68I	TCGCGA	1 cut(s)	23
BspACI	CCGC	3 cut(s)	186, 212, 433
BspCNI	CTCAG	3 cut(s)	73, 250, 400
BspDI	ATCGAT	1 cut(s)	374
BspFNI	CGCG	2 cut(s)	23, 214
BspPI	GGATC	3 cut(s)	29, 68, 211
BsrDI	GCAATG	1 cut(s)	321
BssMI	GATC	7 cut(s)	34, 60, 178, 203, 222, 371, 424
BssNI	GRCGYC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	342
BstACI	GRCGYC	1 cut(s)	130
BstDEI	CTNAG	3 cut(s)	81, 258, 408
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	2 cut(s)	23, 214
BstKTI	GATC	7 cut(s)	37, 63, 181, 206, 225, 374, 427
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	7 cut(s)	34, 60, 178, 203, 222, 371, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstUI	CGCG	2 cut(s)	23, 214
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	2 cut(s)	34, 203
BstYI	RGATCY	2 cut(s)	34, 203
Bsu15I	ATCGAT	1 cut(s)	374
BsuTUI	ATCGAT	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	268
BtuMI	TCGCGA	1 cut(s)	23
ClaI	ATCGAT	1 cut(s)	374
CseI	GACGC	1 cut(s)	119
CviAII	CATG	1 cut(s)	313
CviJI	RGCY	8 cut(s)	42, 97, 163, 185, 257, 277, 292, 306
CviKI_1	RGCY	8 cut(s)	42, 97, 163, 185, 257, 277, 292, 306
DdeI	CTNAG	3 cut(s)	81, 258, 408
DpnI	GATC	7 cut(s)	36, 62, 180, 205, 224, 373, 426
DpnII	GATC	7 cut(s)	34, 60, 178, 203, 222, 371, 424
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	125
FaeI	CATG	1 cut(s)	316
FaiI	YATR	3 cut(s)	309, 314, 423
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	3 cut(s)	186, 189, 212
FokI	GGATG	1 cut(s)	275
Fsp4HI	GCNGC	3 cut(s)	186, 189, 212
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	3 cut(s)	186, 189, 212
HgaI	GACGC	1 cut(s)	119
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	2 cut(s)	18, 404
HphI	GGTGA	2 cut(s)	235, 245
Hpy188I	TCNGA	2 cut(s)	39, 409
Hpy188III	TCNNGA	2 cut(s)	22, 416
Hpy99I	CGWCG	3 cut(s)	28, 135, 138
HpyAV	CCTTC	2 cut(s)	50, 331
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	3 cut(s)	81, 258, 408
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	7 cut(s)	34, 60, 178, 203, 222, 371, 424
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	8 cut(s)	55, 75, 93, 112, 139, 154, 177, 415
Lsp1109I	GCAGC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	397
MalI	GATC	7 cut(s)	36, 62, 180, 205, 224, 373, 426
MboI	GATC	7 cut(s)	34, 60, 178, 203, 222, 371, 424
MboII	GAAGA	4 cut(s)	59, 310, 359, 381
MflI	RGATCY	2 cut(s)	34, 203
MluCI	AATT	2 cut(s)	195, 358
MnlI	CCTC	4 cut(s)	149, 253, 384, 403
MseI	TTAA	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	127
MvnI	CGCG	2 cut(s)	23, 214
MwoI	GCNNNNNNNGC	1 cut(s)	103
NdeII	GATC	7 cut(s)	34, 60, 178, 203, 222, 371, 424
NlaIII	CATG	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	397
NruI	TCGCGA	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	18, 404
PkrI	GCNGC	3 cut(s)	187, 190, 213
PshBI	ATTAAT	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspXI	VCTCGAGB	1 cut(s)	388
PsuI	RGATCY	2 cut(s)	34, 203
RruI	TCGCGA	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	3 cut(s)	186, 189, 212
Sau3AI	GATC	7 cut(s)	34, 60, 178, 203, 222, 371, 424
ScrFI	CCNGG	1 cut(s)	127
SetI	ASST	7 cut(s)	128, 165, 259, 294, 308, 395, 414
Sfr274I	CTCGAG	1 cut(s)	388
SlaI	CTCGAG	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
Sse9I	AATT	2 cut(s)	195, 358
SsiI	CCGC	3 cut(s)	186, 212, 433
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	5 cut(s)	63, 362, 374, 389, 417
TasI	AATT	2 cut(s)	195, 358
TauI	GCSGC	2 cut(s)	188, 214
TfiI	GAWTC	2 cut(s)	18, 404
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	397
TspDTI	ATGAA	1 cut(s)	310
TspGWI	ACGGA	2 cut(s)	217, 416
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	1 cut(s)	195
XhoI	CTCGAG	1 cut(s)	388
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.