Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009844

Physical Location & Seq

Genomic Coordinates Reverse (-)

4614143 .. 4614640

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGAGGGTCTGTGGCGGGCGGCGACGGGCCAAGACCCAAGCCCGGAAGACTACACCGGAATCGAGTTCTGGTCCAATCCTGAGCGCGCCACGTGGCTGACCAAGCAGGGCGATTACATCAAGACGTGGAGGCGCCGCTGGTTCGTCTTGAAACAGGGGAAGCTGTTCTGGTTCAAAGACAATCACGTGACCCGCTCATCGACGCCGCGCGGTGTGATCCCGGTCGGCACGTGCCTGACTGTGAAGGGCGCCGAGGACGTGGTCCACAAGCCCTGCGCCTTCGAGCTGTCGACTACCAACCACGACACGATGTACTTCATCGCCGATTCGGAGAAGGAGAAGGAGGAGTGGATTAACTCGATCGGACGGTCCATAGTTCAGCACTCCAGATCGCTCGCGGATTCCGAGGTCGTCGATTACGATAGCAGCCGACATCGATCACAACCTCTCGATTTTCATGGTACAGTAAACTGTAATTTGTGTTTTTTTTTCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

166

Amino Acids

19.11

Weight (kDa)

6.3

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH	PF00169	30 - 125	1e-19	PH domain
PH_9	PF15410	41 - 121	6.5e-06	Pleckstrin homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29700
fragaria_vesca	FvH4_3g38390
malus_domestica	MD11G1076900.v1.1 MD11G1077100.v1.1
prunus_persica	Prupe.6G059100_v2.0.a1
pyrus_communis	pycom03g05840 pycom11g06480
rosa_chinensis	RchiOBHm_Chr5g0069011
rosa_laevigata	RLG00000036030
rosa_multiflora	Rmu_sc0000853.1_g000005 Rmu_sc0000936.1_g000003 Rmu_sc0006282.1_g000036
rosa_roxburghii	Rroxscaffold_1G00011710
rosa_rugosa	Rorug05G0395600
rosa_samantha	Rh2BG536900 Rh2DG545700 Rh5BG471400 Rh5CG493900 Rh5DG484100
rosa_wichuraiana	Rw0G006110 Rw5G042250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	132, 248
AccBSI	CCGCTC	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	290
AccII	CGCG	4 cut(s)	87, 208, 210, 398
AciI	CCGC	7 cut(s)	16, 20, 136, 193, 206, 210, 398
AclWI	GGATC	1 cut(s)	211
AcvI	CACGTG	3 cut(s)	93, 187, 231
AcyI	GRCGYC	3 cut(s)	133, 203, 249
AfaI	GTAC	2 cut(s)	314, 463
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	151, 175
AjiI	CACGTC	2 cut(s)	126, 259
AluBI	AGCT	2 cut(s)	163, 286
AluI	AGCT	2 cut(s)	163, 286
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	164
AspLEI	GCGC	6 cut(s)	87, 89, 135, 210, 251, 278
AspS9I	GGNCC	4 cut(s)	28, 72, 262, 369
AsuC2I	CCSGG	2 cut(s)	44, 221
AvaII	GGWCC	3 cut(s)	72, 262, 369
BanI	GGYRCC	2 cut(s)	132, 248
BbrPI	CACGTG	3 cut(s)	93, 187, 231
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	438
BcnI	CCSGG	2 cut(s)	44, 221
BfoI	RGCGCY	2 cut(s)	136, 252
BisI	GCNGC	4 cut(s)	21, 136, 206, 427
BlsI	GCNGC	4 cut(s)	22, 137, 207, 428
Bme1390I	CCNGG	2 cut(s)	44, 221
Bme18I	GGWCC	3 cut(s)	72, 262, 369
BmgBI	CACGTC	2 cut(s)	126, 259
BmgT120I	GGNCC	4 cut(s)	28, 72, 262, 369
BmiI	GGNNCC	2 cut(s)	134, 250
BmrFI	CCNGG	2 cut(s)	44, 221
BpiI	GAAGAC	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	370
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	2 cut(s)	44, 221
Bsa29I	ATCGAT	1 cut(s)	436
BsaAI	YACGTR	3 cut(s)	93, 187, 231
BsaHI	GRCGYC	3 cut(s)	133, 203, 249
BsaJI	CCNNGG	2 cut(s)	252, 405
BsaWI	WCCGGW	1 cut(s)	56
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
BseCI	ATCGAT	1 cut(s)	436
BseDI	CCNNGG	2 cut(s)	252, 405
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	72
BsePI	GCGCGC	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	1 cut(s)	438
Bsh1236I	CGCG	4 cut(s)	87, 208, 210, 398
Bsh1285I	CGRYCG	2 cut(s)	225, 363
BshFI	GGCC	1 cut(s)	30
BshNI	GGYRCC	2 cut(s)	132, 248
BshVI	ATCGAT	1 cut(s)	436
BsiEI	CGRYCG	2 cut(s)	225, 363
BsiSI	CCGG	3 cut(s)	44, 57, 221
BslI	CCNNNNNNNGG	1 cut(s)	43
BsnI	GGCC	1 cut(s)	30
Bsp143I	GATC	4 cut(s)	216, 360, 389, 437
BspACI	CCGC	7 cut(s)	16, 20, 136, 193, 206, 210, 398
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	1 cut(s)	73
BspDI	ATCGAT	1 cut(s)	436
BspFNI	CGCG	4 cut(s)	87, 208, 210, 398
BspLI	GGNNCC	2 cut(s)	134, 250
BspPI	GGATC	1 cut(s)	211
BspT107I	GGYRCC	2 cut(s)	132, 248
BsrBI	CCGCTC	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	252, 405
BssHII	GCGCGC	1 cut(s)	85
BssMI	GATC	4 cut(s)	216, 360, 389, 437
BssNI	GRCGYC	3 cut(s)	133, 203, 249
Bst4CI	ACNGT	4 cut(s)	241, 369, 466, 473
BstACI	GRCGYC	3 cut(s)	133, 203, 249
BstBAI	YACGTR	3 cut(s)	93, 187, 231
BstC8I	GCNNGC	3 cut(s)	18, 87, 396
BstDEI	CTNAG	1 cut(s)	81
BstFNI	CGCG	4 cut(s)	87, 208, 210, 398
BstH2I	RGCGCY	2 cut(s)	136, 252
BstHHI	GCGC	6 cut(s)	87, 89, 135, 210, 251, 278
BstKTI	GATC	4 cut(s)	219, 363, 392, 440
BstMBI	GATC	4 cut(s)	216, 360, 389, 437
BstMCI	CGRYCG	2 cut(s)	225, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	103
BstSCI	CCNGG	2 cut(s)	42, 219
BstUI	CGCG	4 cut(s)	87, 208, 210, 398
BstV1I	GCAGC	1 cut(s)	438
BstV2I	GAAGAC	1 cut(s)	54
Bsu15I	ATCGAT	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	30
BsuTUI	ATCGAT	1 cut(s)	436
BtgZI	GCGATG	1 cut(s)	304
BtrI	CACGTC	2 cut(s)	126, 259
Cac8I	GCNNGC	3 cut(s)	18, 87, 396
CfoI	GCGC	6 cut(s)	87, 89, 135, 210, 251, 278
Cfr13I	GGNCC	4 cut(s)	28, 72, 262, 369
ClaI	ATCGAT	1 cut(s)	436
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	313, 462
CviAII	CATG	1 cut(s)	458
CviJI	RGCY	7 cut(s)	30, 42, 97, 163, 271, 286, 429
CviKI_1	RGCY	7 cut(s)	30, 42, 97, 163, 271, 286, 429
CviQI	GTAC	2 cut(s)	313, 462
DdeI	CTNAG	1 cut(s)	81
DinI	GGCGCC	2 cut(s)	134, 250
DpnI	GATC	4 cut(s)	218, 362, 391, 439
DpnII	GATC	4 cut(s)	216, 360, 389, 437
Eco47I	GGWCC	3 cut(s)	72, 262, 369
Eco72I	CACGTG	3 cut(s)	93, 187, 231
EgeI	GGCGCC	2 cut(s)	134, 250
EheI	GGCGCC	2 cut(s)	134, 250
FaeI	CATG	1 cut(s)	461
FaiI	YATR	2 cut(s)	374, 459
FatI	CATG	1 cut(s)	457
FauI	CCCGC	2 cut(s)	9, 200
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	4 cut(s)	21, 136, 206, 427
Fsp4HI	GCNGC	4 cut(s)	21, 136, 206, 427
GlaI	GCGC	6 cut(s)	86, 88, 134, 209, 250, 277
GluI	GCNGC	4 cut(s)	21, 136, 206, 427
GsuI	CTGGAG	1 cut(s)	370
HaeII	RGCGCY	2 cut(s)	136, 252
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	3 cut(s)	44, 57, 221
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	6 cut(s)	87, 89, 135, 210, 251, 278
Hin1I	GRCGYC	3 cut(s)	133, 203, 249
Hin1II	CATG	1 cut(s)	461
Hin6I	GCGC	6 cut(s)	85, 87, 133, 208, 249, 276
HinP1I	GCGC	6 cut(s)	85, 87, 133, 208, 249, 276
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	3 cut(s)	60, 326, 401
HpaII	CCGG	3 cut(s)	44, 57, 221
Hpy166II	GTNNAC	3 cut(s)	265, 291, 469
Hpy188I	TCNGA	3 cut(s)	331, 365, 406
Hpy188III	TCNNGA	5 cut(s)	80, 121, 148, 387, 449
Hpy8I	GTNNAC	3 cut(s)	265, 291, 469
Hpy99I	CGWCG	3 cut(s)	28, 205, 416
HpyAV	CCTTC	4 cut(s)	238, 289, 328, 334
HpyCH4III	ACNGT	4 cut(s)	241, 369, 466, 473
HpyCH4IV	ACGT	5 cut(s)	92, 125, 186, 230, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	103
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	5 cut(s)	92, 125, 186, 230, 258
Hsp92I	GRCGYC	3 cut(s)	133, 203, 249
Hsp92II	CATG	1 cut(s)	461
HspAI	GCGC	6 cut(s)	85, 87, 133, 208, 249, 276
KasI	GGCGCC	2 cut(s)	132, 248
Kzo9I	GATC	4 cut(s)	216, 360, 389, 437
Lsp1109I	GCAGC	1 cut(s)	438
MaeII	ACGT	5 cut(s)	92, 125, 186, 230, 258
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	4 cut(s)	218, 362, 391, 439
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	4 cut(s)	216, 360, 389, 437
MboII	GAAGA	1 cut(s)	59
MluCI	AATT	1 cut(s)	475
Mly113I	GGCGCC	2 cut(s)	133, 249
MnlI	CCTC	5 cut(s)	123, 247, 337, 400, 456
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	2 cut(s)	354, 496
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	3 cut(s)	44, 57, 221
MspR9I	CCNGG	2 cut(s)	44, 221
MvnI	CGCG	4 cut(s)	87, 208, 210, 398
MwoI	GCNNNNNNNGC	1 cut(s)	103
NarI	GGCGCC	2 cut(s)	133, 249
NciI	CCSGG	2 cut(s)	44, 221
NdeII	GATC	4 cut(s)	216, 360, 389, 437
NlaIII	CATG	1 cut(s)	461
NlaIV	GGNNCC	2 cut(s)	134, 250
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	187
PauI	GCGCGC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	2 cut(s)	402, 417
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	3 cut(s)	60, 326, 401
PflFI	GACNNNGTC	1 cut(s)	260
PkrI	GCNGC	4 cut(s)	22, 137, 207, 428
Ple19I	CGATCG	1 cut(s)	363
PluTI	GGCGCC	2 cut(s)	136, 252
PmaCI	CACGTG	3 cut(s)	93, 187, 231
PmlI	CACGTG	3 cut(s)	93, 187, 231
Ppu21I	YACGTR	3 cut(s)	93, 187, 231
PspCI	CACGTG	3 cut(s)	93, 187, 231
PspN4I	GGNNCC	2 cut(s)	134, 250
PspPI	GGNCC	4 cut(s)	28, 72, 262, 369
PsyI	GACNNNGTC	1 cut(s)	260
PteI	GCGCGC	1 cut(s)	85
PvuI	CGATCG	1 cut(s)	363
RsaI	GTAC	2 cut(s)	314, 463
RsaNI	GTAC	2 cut(s)	313, 462
SalI	GTCGAC	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	354, 496
SatI	GCNGC	4 cut(s)	21, 136, 206, 427
Sau3AI	GATC	4 cut(s)	216, 360, 389, 437
Sau96I	GGNCC	4 cut(s)	28, 72, 262, 369
ScrFI	CCNGG	2 cut(s)	44, 221
SetI	ASST	9 cut(s)	95, 128, 165, 189, 233, 261, 288, 411, 448
SfoI	GGCGCC	2 cut(s)	134, 250
SinI	GGWCC	3 cut(s)	72, 262, 369
Sse9I	AATT	1 cut(s)	475
SsiI	CCGC	7 cut(s)	16, 20, 136, 193, 206, 210, 398
SspDI	GGCGCC	2 cut(s)	132, 248
StyD4I	CCNGG	2 cut(s)	42, 219
TaaI	ACNGT	4 cut(s)	241, 369, 466, 473
TaiI	ACGT	5 cut(s)	95, 128, 189, 233, 261
TaqI	TCGA	8 cut(s)	63, 200, 282, 290, 359, 414, 436, 450
TasI	AATT	1 cut(s)	475
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	3 cut(s)	23, 138, 208
TfiI	GAWTC	3 cut(s)	60, 326, 401
Tru1I	TTAA	2 cut(s)	354, 496
Tru9I	TTAA	2 cut(s)	354, 496
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	426
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	307, 446
Tth111I	GACNNNGTC	1 cut(s)	260
VpaK11BI	GGWCC	3 cut(s)	72, 262, 369
XmiI	GTMKAC	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.