Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007446

Physical Location & Seq

Genomic Coordinates Reverse (-)

12925509 .. 12928009

Gene Structure 2501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGGCAGTCTCGTTTCTACGAATTCCAATTCCATCGCGGGTCTTCTGGTACCCGACCCGACTTATTCGGGTCACACCAGCGTTATTACGATTCTCTTCCTCCGCCGCATTTCAGCCGTCTTCTACTTCACTCTCACCGCCTTCTTCCGACAACTTTCTCGCCGATAAATGGGAATCATATCGGAAGAAGAAGGTCGTCATTCGAATTGGATACGTGGGTACTGATTACAGAGGCTTACAGATTCAAAGAGACGACCCTTCTATCAAAACTATTGAGGGTGAGTTGGAAGTTGCTATATACAAGGCAGGTGGGATTAGAGATAGTAACTATGGTGATCTTCATAAGATTGGTTGGGCTAGAAGTAGTCGAACTGATAAAGGAGTTCATTCTTTGGCAACGTCAATATCGCTGAAAATGGAGATCCCTGAGACAGCGTGGAAGGATGATCCTCAAGGCACTGTTCTTGCTAAATGCATTAGCAAACACCTTCCTGAGAATATTAGAGTTTTCAGTGTTTTACCGTCAAATAGGAGATTTGATCCTCGAAGAGAGTGTACGCTACGGAAATATTCTTACCTCCTCCCTGTTGATGTTCTTGGGATCAAGAATAGCTTTACTTCAGATGAGATTGACTATCACATTACGGATTTCAACGAAATTTTAAAAGAATTTGAGGGTGAATATCCTTTCCATAACTATACACAGCGGTCACGGTACAGAAGGAAATCGGAACAAAAAATAAAGCAAAGAAACGGACGCCCTCCAAGAGAACCAAAATCAATCAAAGCATCAGAATCAGAGTTTAGAGAGGAGAACCACATAGAAATTGGAGAAGAAGAAGAAGAAAAAGAAGTGGATGGTGAATCTGATGAACATGTGGTTACTCCTGATTCTGATAATTCTCAGGTGTACAGTCGTGCAAAATGGCTGTACGAGCCAGATGAGACAGATAAGATTAGCGGTGCTCATTTCAGGAAAGTGTTTCGATGTCGTAGTGGAAAGCTAGAGAATTCACTTGGATTCGGCTTTGTGGAGATCTCCATATGGGGAGAATCATTCATGTTGCATCAGATACGGAAGATGATTGGAACGGCCGTGGCAGTGAAGAGAGAGCTGCTTCCTAGAGACATCATAAGACTATCTCTGAACAAGTTCACAAGAATTGTCTTGCCACTGGCTCCATCTGAAGTACTGATCCTGAGAGGAAACAGTTTCGAAGTGCGTAGATTGCCTGAGAGGCCGGGGATGGAAGCAACAGGTGAATCAGAAGAAGTGGAGAAGGAGATAGAGGAGTTTTACAGAGCAGTGATGGTTCCACAGGTGAGTATATTCCTGGATTCTGAGAAATCTCCATGGAAAGAGTGGGTGGATCATTTGGATAGGAATGATGGTTTGATAGACGAGGAATTGGAAGATGTAAGGAAAGGTTGGGAGGAGTGGAAAGCTGCGAAGCCATGGATGAATTTGAAGAAGACAGAAGATGATGAAGAAGCATTGAGTTCTGTTTCAGTACCTATTCATCAAGCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

510

Amino Acids

58.97

Weight (kDa)

6.01

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30320
fragaria_vesca	FvH4_3g40070 FvH4_3g40070 FvH4_3g40070
malus_domestica	MD11G1060800.v1.1
prunus_persica	Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1
pyrus_communis	pycom11g05030
rosa_chinensis	RchiOBHm_Chr5g0072261
rosa_laevigata	RLG00000036289
rosa_multiflora	Rmu_sc0000714.1_g000004
rosa_roxburghii	Rroxscaffold_1G00009010
rosa_rugosa	Rorug05G0417100 Rorug05G0417200 Rorug05G0417300
rosa_samantha	Rh5AG473100 Rh5BG493300 Rh5CG517300 Rh5DG505300
rosa_wichuraiana	Rw5G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	296
Acc65I	GGTACC	1 cut(s)	48
AccB1I	GGYRCC	1 cut(s)	48
AccII	CGCG	1 cut(s)	37
AciI	CCGC	6 cut(s)	37, 102, 105, 137, 706, 960
AclWI	GGATC	6 cut(s)	415, 440, 533, 608, 1189, 1377
AcoI	YGGCCR	1 cut(s)	1092
AcsI	RAATTY	5 cut(s)	21, 657, 668, 1009, 1462
AcuI	CTGAAG	2 cut(s)	603, 1206
AcyI	GRCGYC	1 cut(s)	757
AfaI	GTAC	8 cut(s)	50, 220, 556, 716, 911, 932, 1191, 1512
AfiI	CCNNNNNNNGG	1 cut(s)	168
AflIII	ACRYGT	1 cut(s)	874
AgsI	TTSAA	3 cut(s)	245, 652, 1468
AjnI	CCWGG	1 cut(s)	1332
AluBI	AGCT	5 cut(s)	612, 1003, 1114, 1445, 1526
AluI	AGCT	5 cut(s)	612, 1003, 1114, 1445, 1526
Alw21I	GWGCWC	1 cut(s)	967
Alw26I	GTCTC	5 cut(s)	13, 243, 422, 938, 1119
AlwI	GGATC	6 cut(s)	415, 440, 533, 608, 1189, 1377
AoxI	GGCC	2 cut(s)	1092, 1238
ApeKI	GCWGC	2 cut(s)	1114, 1445
ApoI	RAATTY	5 cut(s)	21, 657, 668, 1009, 1462
Asp700I	GAANNNNTTC	1 cut(s)	1151
Asp718I	GGTACC	1 cut(s)	48
AsuC2I	CCSGG	1 cut(s)	1242
AsuHPI	GGTGA	7 cut(s)	126, 290, 344, 689, 872, 1271, 1333
AsuII	TTCGAA	2 cut(s)	202, 1215
BaeI	ACNNNNGTAYC	2 cut(s)	202, 235
BanI	GGYRCC	1 cut(s)	48
BarI	GAAGNNNNNNTAC	2 cut(s)	538, 570
BbsI	GAAGAC	3 cut(s)	34, 111, 1478
Bbv12I	GWGCWC	1 cut(s)	967
BbvI	GCAGC	2 cut(s)	1101, 1432
BccI	CCATC	6 cut(s)	40, 851, 1189, 1240, 1303, 1382
BceAI	ACGGC	3 cut(s)	100, 1079, 1107
BciT130I	CCWGG	1 cut(s)	1334
BciVI	GTATCC	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	1242
BcoDI	GTCTC	5 cut(s)	13, 243, 422, 938, 1119
BfaI	CTAG	3 cut(s)	357, 1004, 1122
BfuAI	ACCTGC	1 cut(s)	296
BfuI	GTATCC	1 cut(s)	203
BglI	GCCNNNNNGGC	1 cut(s)	1237
BglII	AGATCT	1 cut(s)	1035
BisI	GCNGC	3 cut(s)	105, 1115, 1446
BlsI	GCNGC	3 cut(s)	106, 1116, 1447
BmcAI	AGTACT	1 cut(s)	1191
Bme1390I	CCNGG	2 cut(s)	1242, 1334
BmiI	GGNNCC	3 cut(s)	50, 1179, 1314
BmrFI	CCNGG	2 cut(s)	1242, 1334
BmsI	GCATC	2 cut(s)	797, 1075
BpiI	GAAGAC	3 cut(s)	34, 111, 1478
Bpu14I	TTCGAA	2 cut(s)	202, 1215
BpuEI	CTTGAG	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	1242
BsaAI	YACGTR	1 cut(s)	214
BsaHI	GRCGYC	1 cut(s)	757
BsaJI	CCNNGG	4 cut(s)	1095, 1241, 1352, 1454
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	1179
BseBI	CCWGG	1 cut(s)	1334
BseDI	CCNNGG	4 cut(s)	1095, 1241, 1352, 1454
BseGI	GGATG	4 cut(s)	448, 862, 1251, 1464
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMII	CTCAG	6 cut(s)	417, 483, 917, 1190, 1224, 1332
BseNI	ACTGG	1 cut(s)	1179
BseRI	GAGGAG	4 cut(s)	569, 824, 1304, 1448
BseX3I	CGGCCG	1 cut(s)	1092
BseXI	GCAGC	2 cut(s)	1101, 1432
Bsh1236I	CGCG	1 cut(s)	37
Bsh1285I	CGRYCG	1 cut(s)	1095
BshFI	GGCC	2 cut(s)	1094, 1240
BshNI	GGYRCC	1 cut(s)	48
BsiEI	CGRYCG	1 cut(s)	1095
BsiHKAI	GWGCWC	1 cut(s)	967
BsiSI	CCGG	1 cut(s)	1241
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	5 cut(s)	13, 243, 422, 938, 1119
BsmBI	CGTCTC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	1094, 1240
Bsp119I	TTCGAA	2 cut(s)	202, 1215
Bsp1286I	GDGCHC	1 cut(s)	967
Bsp1407I	TGTACA	1 cut(s)	909
Bsp143I	GATC	8 cut(s)	334, 420, 445, 538, 600, 1035, 1194, 1369
Bsp19I	CCATGG	2 cut(s)	1352, 1454
BspACI	CCGC	6 cut(s)	37, 102, 105, 137, 706, 960
BspANI	GGCC	2 cut(s)	1094, 1240
BspCNI	CTCAG	6 cut(s)	418, 484, 916, 1191, 1225, 1333
BspFNI	CGCG	1 cut(s)	37
BspLI	GGNNCC	3 cut(s)	50, 1179, 1314
BspMI	ACCTGC	1 cut(s)	296
BspPI	GGATC	6 cut(s)	415, 440, 533, 608, 1189, 1377
BspT104I	TTCGAA	2 cut(s)	202, 1215
BspT107I	GGYRCC	1 cut(s)	48
BsrGI	TGTACA	1 cut(s)	909
BsrI	ACTGG	1 cut(s)	1179
BssECI	CCNNGG	4 cut(s)	1095, 1241, 1352, 1454
BssMI	GATC	8 cut(s)	334, 420, 445, 538, 600, 1035, 1194, 1369
BssNI	GRCGYC	1 cut(s)	757
BssT1I	CCWWGG	2 cut(s)	1352, 1454
Bst2UI	CCWGG	1 cut(s)	1334
Bst4CI	ACNGT	5 cut(s)	460, 522, 714, 914, 1211
Bst6I	CTCTTC	3 cut(s)	100, 541, 1100
BstACI	GRCGYC	1 cut(s)	757
BstAUI	TGTACA	1 cut(s)	909
BstBAI	YACGTR	1 cut(s)	214
BstBI	TTCGAA	2 cut(s)	202, 1215
BstDEI	CTNAG	6 cut(s)	426, 492, 903, 1199, 1233, 1341
BstDSI	CCRYGG	3 cut(s)	1095, 1352, 1454
BstF5I	GGATG	4 cut(s)	448, 862, 1251, 1464
BstFNI	CGCG	1 cut(s)	37
BstKTI	GATC	8 cut(s)	337, 423, 448, 541, 603, 1038, 1197, 1372
BstMAI	GTCTC	5 cut(s)	13, 243, 422, 938, 1119
BstMBI	GATC	8 cut(s)	334, 420, 445, 538, 600, 1035, 1194, 1369
BstMCI	CGRYCG	1 cut(s)	1095
BstMWI	GCNNNNNNNGC	3 cut(s)	934, 1228, 1237
BstNI	CCWGG	1 cut(s)	1334
BstNSI	RCATGY	1 cut(s)	878
BstSCI	CCNGG	2 cut(s)	1240, 1332
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	1101, 1432
BstV2I	GAAGAC	3 cut(s)	34, 111, 1478
BstX2I	RGATCY	2 cut(s)	420, 1035
BstYI	RGATCY	2 cut(s)	420, 1035
BstZI	CGGCCG	1 cut(s)	1092
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	2 cut(s)	1094, 1240
BtgI	CCRYGG	3 cut(s)	1095, 1352, 1454
BtgZI	GCGATG	1 cut(s)	18
BtsCI	GGATG	4 cut(s)	448, 862, 1251, 1464
BtsI	GCAGTG	2 cut(s)	1107, 1311
BtsIMutI	CAGTG	5 cut(s)	456, 517, 1107, 1172, 1311
BveI	ACCTGC	1 cut(s)	296
CseI	GACGC	1 cut(s)	765
Csp6I	GTAC	8 cut(s)	49, 219, 555, 715, 910, 931, 1190, 1511
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	4 cut(s)	875, 1060, 1353, 1455
CviQI	GTAC	8 cut(s)	49, 219, 555, 715, 910, 931, 1190, 1511
DdeI	CTNAG	6 cut(s)	426, 492, 903, 1199, 1233, 1341
DpnI	GATC	8 cut(s)	336, 422, 447, 540, 602, 1037, 1196, 1371
DpnII	GATC	8 cut(s)	334, 420, 445, 538, 600, 1035, 1194, 1369
DraI	TTTAAA	1 cut(s)	663
EaeI	YGGCCR	1 cut(s)	1092
EagI	CGGCCG	1 cut(s)	1092
Eam1104I	CTCTTC	3 cut(s)	100, 541, 1100
EarI	CTCTTC	3 cut(s)	100, 541, 1100
EciI	GGCGGA	1 cut(s)	91
EclXI	CGGCCG	1 cut(s)	1092
Eco130I	CCWWGG	2 cut(s)	1352, 1454
Eco52I	CGGCCG	1 cut(s)	1092
Eco57I	CTGAAG	2 cut(s)	603, 1206
EcoRI	GAATTC	2 cut(s)	21, 1009
EcoRII	CCWGG	1 cut(s)	1332
EcoT14I	CCWWGG	2 cut(s)	1352, 1454
EcoT22I	ATGCAT	1 cut(s)	476
ErhI	CCWWGG	2 cut(s)	1352, 1454
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	4 cut(s)	878, 1063, 1356, 1458
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FatI	CATG	4 cut(s)	874, 1059, 1352, 1454
FauI	CCCGC	1 cut(s)	30
FauNDI	CATATG	1 cut(s)	1043
Fnu4HI	GCNGC	3 cut(s)	105, 1115, 1446
FokI	GGATG	4 cut(s)	455, 869, 1258, 1471
Fsp4HI	GCNGC	3 cut(s)	105, 1115, 1446
FspBI	CTAG	3 cut(s)	357, 1004, 1122
GluI	GCNGC	3 cut(s)	105, 1115, 1446
HaeIII	GGCC	2 cut(s)	1094, 1240
HapII	CCGG	1 cut(s)	1241
HgaI	GACGC	1 cut(s)	765
Hin1I	GRCGYC	1 cut(s)	757
Hin1II	CATG	4 cut(s)	878, 1063, 1356, 1458
HpaII	CCGG	1 cut(s)	1241
HphI	GGTGA	7 cut(s)	126, 290, 344, 689, 872, 1271, 1333
Hpy166II	GTNNAC	3 cut(s)	555, 910, 1155
Hpy188III	TCNNGA	5 cut(s)	491, 604, 887, 973, 1198
Hpy8I	GTNNAC	3 cut(s)	555, 910, 1155
HpyAV	CCTTC	7 cut(s)	150, 184, 267, 433, 497, 714, 1273
HpyCH4III	ACNGT	5 cut(s)	460, 522, 714, 914, 1211
HpyCH4IV	ACGT	2 cut(s)	213, 398
HpyCH4V	TGCA	3 cut(s)	474, 920, 1066
HpyF10VI	GCNNNNNNNGC	3 cut(s)	934, 1228, 1237
HpyF3I	CTNAG	6 cut(s)	426, 492, 903, 1199, 1233, 1341
HpySE526I	ACGT	2 cut(s)	213, 398
Hsp92I	GRCGYC	1 cut(s)	757
Hsp92II	CATG	4 cut(s)	878, 1063, 1356, 1458
KpnI	GGTACC	1 cut(s)	52
Kzo9I	GATC	8 cut(s)	334, 420, 445, 538, 600, 1035, 1194, 1369
LmnI	GCTCC	1 cut(s)	1183
Lsp1109I	GCAGC	2 cut(s)	1101, 1432
LweI	GCATC	2 cut(s)	797, 1075
MaeI	CTAG	3 cut(s)	357, 1004, 1122
MaeII	ACGT	2 cut(s)	213, 398
MaeIII	GTNAC	4 cut(s)	70, 323, 708, 880
MalI	GATC	8 cut(s)	336, 422, 447, 540, 602, 1037, 1196, 1371
MboI	GATC	8 cut(s)	334, 420, 445, 538, 600, 1035, 1194, 1369
MflI	RGATCY	2 cut(s)	420, 1035
MhlI	GDGCHC	1 cut(s)	967
MmeI	TCCRAC	2 cut(s)	171, 264
Mph1103I	ATGCAT	1 cut(s)	476
MroXI	GAANNNNTTC	1 cut(s)	1151
MseI	TTAA	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	706
MspI	CCGG	1 cut(s)	1241
MspR9I	CCNGG	2 cut(s)	1242, 1334
MvaI	CCWGG	1 cut(s)	1334
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	3 cut(s)	934, 1228, 1237
NciI	CCSGG	1 cut(s)	1242
NcoI	CCATGG	2 cut(s)	1352, 1454
NdeI	CATATG	1 cut(s)	1043
NdeII	GATC	8 cut(s)	334, 420, 445, 538, 600, 1035, 1194, 1369
NlaIII	CATG	4 cut(s)	878, 1063, 1356, 1458
NlaIV	GGNNCC	3 cut(s)	50, 1179, 1314
NmuCI	GTSAC	2 cut(s)	70, 708
NsiI	ATGCAT	1 cut(s)	476
NspI	RCATGY	1 cut(s)	878
NspV	TTCGAA	2 cut(s)	202, 1215
PaqCI	CACCTGC	1 cut(s)	296
PciI	ACATGT	1 cut(s)	874
PdmI	GAANNNNTTC	1 cut(s)	1151
PfoI	TCCNGGA	1 cut(s)	1332
PkrI	GCNGC	3 cut(s)	106, 1116, 1447
Ppu21I	YACGTR	1 cut(s)	214
PscI	ACATGT	1 cut(s)	874
Psp6I	CCWGG	1 cut(s)	1332
PspGI	CCWGG	1 cut(s)	1332
PspN4I	GGNNCC	3 cut(s)	50, 1179, 1314
PsuI	RGATCY	2 cut(s)	420, 1035
RsaI	GTAC	8 cut(s)	50, 220, 556, 716, 911, 932, 1191, 1512
RsaNI	GTAC	8 cut(s)	49, 219, 555, 715, 910, 931, 1190, 1511
SaqAI	TTAA	1 cut(s)	662
SatI	GCNGC	3 cut(s)	105, 1115, 1446
Sau3AI	GATC	8 cut(s)	334, 420, 445, 538, 600, 1035, 1194, 1369
ScaI	AGTACT	1 cut(s)	1191
ScrFI	CCNGG	2 cut(s)	1242, 1334
SduI	GDGCHC	1 cut(s)	967
SfaNI	GCATC	2 cut(s)	797, 1075
SfuI	TTCGAA	2 cut(s)	202, 1215
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
SsiI	CCGC	6 cut(s)	37, 102, 105, 137, 706, 960
SspI	AATATT	2 cut(s)	499, 569
SspMI	CTAG	3 cut(s)	357, 1004, 1122
StyD4I	CCNGG	2 cut(s)	1240, 1332
StyI	CCWWGG	2 cut(s)	1352, 1454
TaaI	ACNGT	5 cut(s)	460, 522, 714, 914, 1211
TaiI	ACGT	2 cut(s)	216, 401
TaqI	TCGA	5 cut(s)	202, 367, 544, 985, 1215
TatI	WGTACW	2 cut(s)	909, 1189
TauI	GCSGC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	5 cut(s)	463, 517, 1107, 1179, 1311
TseFI	GTSAC	2 cut(s)	70, 708
TseI	GCWGC	2 cut(s)	1114, 1445
Tsp45I	GTSAC	2 cut(s)	70, 708
TspDTI	ATGAA	7 cut(s)	329, 374, 885, 1048, 1475, 1500, 1508
TspGWI	ACGGA	4 cut(s)	577, 659, 768, 1090
TspRI	CASTG	5 cut(s)	463, 517, 1107, 1179, 1311
XapI	RAATTY	5 cut(s)	21, 657, 668, 1009, 1462
XceI	RCATGY	1 cut(s)	878
XcmI	CCANNNNNNNNNTGG	2 cut(s)	824, 1359
XmnI	GAANNNNTTC	1 cut(s)	1151
XspI	CTAG	3 cut(s)	357, 1004, 1122
ZrmI	AGTACT	1 cut(s)	1191
Zsp2I	ATGCAT	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.