Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007446

Physical Location & Seq

Genomic Coordinates Forward (+)

57964588 .. 57968374

Gene Structure 3787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0417100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAATGGATTTGTTACCAGTTACGACAAGGGCATTTGTGGGAGAAGAAAGAAAGCACGTGCAGCGAGCGAGGGGATAAGGTTCGAAGACTCTGAAGTCTTGTTGGTCGTTATCATGATGATGATGGAGGAGAGCGGGTTTTCATCGGACTTGGCTACTGTAGCCGAGCGCTTCGCTTCTTCCTCTACTTATCATAATAATTCAATTCTAATGGGACTGACCAGAAAGTCTATATCAATGGAGGAATTGGAATTGGATACTACAGGTGACAGAAGGTTGATAGTTTGGGACCTTAATAGGATTGGGGATGAGCAGTTGGAGGGAGATGGTGATGATGGGCCACCAGAACTTTTGTTTTCACATGGTGGTCTTAAAGCAAAGATATCATATTTCTCAAGGGTACATTTTGGGAAGGAAATAATAGCCAAGGAACTTCAAGTTGATGAAGGACACCTTGATGTGCAGAGGTCACGCTGCCAGATTTCTTCTTGGCTGATCAGTTCAGTAGCCAGATACAATGCTCTGGAGAGGAGAAAAGCTTGCAAGGGCGGTAAAGAAGTAAGCAAGAGAGCTGCCCAATCACAATCATCCACTAAGGGTACAGCAGCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

204

Amino Acids

22.58

Weight (kDa)

6.92

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30320
fragaria_vesca	FvH4_3g40070 FvH4_3g40070 FvH4_3g40070
malus_domestica	MD11G1060800.v1.1
prunus_persica	Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1
pyrus_communis	pycom11g05030
rosa_chinensis	RchiOBHm_Chr5g0072261
rosa_laevigata	RLG00000036289
rosa_multiflora	Rmu_sc0000714.1_g000004
rosa_roxburghii	Rroxscaffold_1G00009010
rosa_rugosa	Rorug05G0417100 Rorug05G0417200 Rorug05G0417300
rosa_samantha	Rh5AG473100 Rh5BG493300 Rh5CG517300 Rh5DG505300
rosa_wichuraiana	Rw5G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	95, 226
AccBSI	CCGCTC	1 cut(s)	135
AciI	CCGC	2 cut(s)	135, 549
AcuI	CTGAAG	1 cut(s)	114
AcvI	CACGTG	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	2 cut(s)	402, 601
AfeI	AGCGCT	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	204, 437
AluBI	AGCT	3 cut(s)	539, 572, 608
AluI	AGCT	3 cut(s)	539, 572, 608
Aor51HI	AGCGCT	1 cut(s)	170
AoxI	GGCC	1 cut(s)	338
ApeKI	GCWGC	4 cut(s)	62, 474, 572, 605
AspLEI	GCGC	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	289, 338
AsuHPI	GGTGA	2 cut(s)	278, 341
AsuII	TTCGAA	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	289
BarI	GAAGNNNNNNTAC	1 cut(s)	592
BbrPI	CACGTG	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	74, 461, 559
BccI	CCATC	3 cut(s)	118, 320, 329
BciVI	GTATCC	1 cut(s)	250
BclI	TGATCA	1 cut(s)	495
BfmI	CTRYAG	2 cut(s)	159, 261
BfoI	RGCGCY	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	250
BisI	GCNGC	4 cut(s)	63, 475, 573, 606
BlsI	GCNGC	4 cut(s)	64, 476, 574, 607
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	2 cut(s)	289, 338
BmiI	GGNNCC	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	545
Bpu14I	TTCGAA	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	379
BsaAI	YACGTR	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse1I	ACTGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	2 cut(s)	313, 587
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	2 cut(s)	143, 544
BseXI	GCAGC	3 cut(s)	74, 461, 559
BsgI	GTGCAG	2 cut(s)	81, 482
BshFI	GGCC	1 cut(s)	340
BslFI	GGGAC	2 cut(s)	228, 302
BsmFI	GGGAC	2 cut(s)	228, 302
BsnI	GGCC	1 cut(s)	340
Bsp119I	TTCGAA	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	495
BspACI	CCGC	2 cut(s)	135, 549
BspANI	GGCC	1 cut(s)	340
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	290
BspT104I	TTCGAA	1 cut(s)	84
BsrBI	CCGCTC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	1 cut(s)	495
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	160
BstBAI	YACGTR	1 cut(s)	59
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	67, 541
BstDEI	CTNAG	1 cut(s)	594
BstF5I	GGATG	2 cut(s)	313, 587
BstH2I	RGCGCY	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	171
BstKTI	GATC	1 cut(s)	498
BstMBI	GATC	1 cut(s)	495
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 161
BstSFI	CTRYAG	2 cut(s)	159, 261
BstV1I	GCAGC	3 cut(s)	74, 461, 559
BstV2I	GAAGAC	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	340
BtsCI	GGATG	2 cut(s)	313, 587
Cac8I	GCNNGC	2 cut(s)	67, 541
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	289, 338
Csp6I	GTAC	2 cut(s)	401, 600
CviAII	CATG	2 cut(s)	115, 362
CviJI	RGCY	9 cut(s)	155, 164, 340, 425, 493, 509, 539, 572, 608
CviKI_1	RGCY	9 cut(s)	155, 164, 340, 425, 493, 509, 539, 572, 608
CviQI	GTAC	2 cut(s)	401, 600
DdeI	CTNAG	1 cut(s)	594
DpnI	GATC	1 cut(s)	497
DpnII	GATC	1 cut(s)	495
DraIII	CACNNNGTG	1 cut(s)	365
DrdI	GACNNNNNNGTC	2 cut(s)	95, 226
DseDI	GACNNNNNNGTC	2 cut(s)	95, 226
Eco130I	CCWWGG	1 cut(s)	426
Eco32I	GATATC	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	289
Eco47III	AGCGCT	1 cut(s)	170
Eco57I	CTGAAG	1 cut(s)	114
Eco72I	CACGTG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	2 cut(s)	118, 365
FaiI	YATR	5 cut(s)	116, 195, 233, 363, 388
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FaqI	GGGAC	2 cut(s)	228, 302
FatI	CATG	2 cut(s)	114, 361
FauI	CCCGC	1 cut(s)	128
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	4 cut(s)	63, 475, 573, 606
FokI	GGATG	2 cut(s)	320, 574
Fsp4HI	GCNGC	4 cut(s)	63, 475, 573, 606
GlaI	GCGC	1 cut(s)	170
GluI	GCNGC	4 cut(s)	63, 475, 573, 606
GsuI	CTGGAG	1 cut(s)	545
HaeII	RGCGCY	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	171
Hin1II	CATG	2 cut(s)	118, 365
Hin6I	GCGC	1 cut(s)	169
HinP1I	GCGC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	1 cut(s)	89
HphI	GGTGA	2 cut(s)	278, 341
Hpy188I	TCNGA	2 cut(s)	94, 148
Hpy188III	TCNNGA	2 cut(s)	115, 524
HpyAV	CCTTC	3 cut(s)	267, 406, 440
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	62, 463, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 161
HpyF3I	CTNAG	1 cut(s)	594
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	2 cut(s)	118, 365
HspAI	GCGC	1 cut(s)	169
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	1 cut(s)	495
LpnPI	CCDG	7 cut(s)	31, 235, 249, 357, 491, 509, 523
Lsp1109I	GCAGC	3 cut(s)	74, 461, 559
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	4 cut(s)	13, 20, 266, 468
MalI	GATC	1 cut(s)	497
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	1 cut(s)	495
MboII	GAAGA	4 cut(s)	57, 98, 171, 477
MluCI	AATT	4 cut(s)	199, 204, 245, 251
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	7 cut(s)	64, 121, 193, 235, 313, 459, 522
MseI	TTAA	2 cut(s)	294, 372
MslI	CAYNNNNRTG	2 cut(s)	119, 456
MwoI	GCNNNNNNNGC	2 cut(s)	62, 161
NdeII	GATC	1 cut(s)	495
NlaIII	CATG	2 cut(s)	118, 365
NlaIV	GGNNCC	1 cut(s)	290
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	2 cut(s)	266, 468
NspV	TTCGAA	1 cut(s)	84
PagI	TCATGA	1 cut(s)	114
PkrI	GCNGC	4 cut(s)	64, 476, 574, 607
PleI	GAGTC	1 cut(s)	83
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	83
Ppu21I	YACGTR	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	289
Psp5II	RGGWCCY	1 cut(s)	289
PspCI	CACGTG	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	2 cut(s)	289, 338
PspPPI	RGGWCCY	1 cut(s)	289
RsaI	GTAC	2 cut(s)	402, 601
RsaNI	GTAC	2 cut(s)	401, 600
RseI	CAYNNNNRTG	2 cut(s)	119, 456
SaqAI	TTAA	2 cut(s)	294, 372
SatI	GCNGC	4 cut(s)	63, 475, 573, 606
Sau3AI	GATC	1 cut(s)	495
Sau96I	GGNCC	2 cut(s)	289, 338
SchI	GAGTC	1 cut(s)	83
SfcI	CTRYAG	2 cut(s)	159, 261
SfuI	TTCGAA	1 cut(s)	84
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	2 cut(s)	119, 456
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	4 cut(s)	199, 204, 245, 251
SsiI	CCGC	2 cut(s)	135, 549
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	84
TasI	AATT	4 cut(s)	199, 204, 245, 251
Tru1I	TTAA	2 cut(s)	294, 372
Tru9I	TTAA	2 cut(s)	294, 372
TseFI	GTSAC	2 cut(s)	266, 468
TseI	GCWGC	4 cut(s)	62, 474, 572, 605
Tsp45I	GTSAC	2 cut(s)	266, 468
TspDTI	ATGAA	3 cut(s)	17, 132, 459
VpaK11BI	GGWCC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.