Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007446

Physical Location & Seq

Genomic Coordinates Reverse (-)

72301824 .. 72305169

Gene Structure 3346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG517300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTCTGTCTTCACTGCGACTCCCGGTCTCGCTTTGGCTTCCAAAACACCCAAACCAGAGCTTCCATTTTTCAAACCCAAAAATACCCTCAAGATTGAACCTTATTTACTGCTGCTCCCCCTGCGCTGCCACTGCTCAACAAACCTTAACCCGCACTGAAAAATGGCAACCCGTTCGAAAGAAGAAAGTGGTTCTCCGGGTCGGGTATGTGGGCACCGATTACCGAGGTCTGCAAATGCAAAGAGATGACCCTTCAATATCTACTATTGAAAAGGAACTGGAAACTGCCATATTCAAGGCCGGTGGTATTCGCGAGAGTAATTTCGGGAACCTGAACAAGATTGCGTGGGCCAGAAGCAGCAGAACCGATAAGGGAGTTCACTCCTTGGCGACAATGATATCATTGAAAATGGAAATCCCTGAAAATGCGTGGGACGGAGACCTGTATGGCATTGCTCTTGTGAATCACATCAATTGTTACCTTCCTCATAATATCAAAATTTTTAGTGTTTTACCTGCACAGAGGAGCTTTGATCCCAGAAAGGAGTGTAATCTCCGTATGTATTCATACCTCCTTCCTGCTGATGTTATTGGAATCAAAAGTCACTTTAGCACAGCTGAAATTGATGATCACATTGCAGACTTCAACGATATACTAAATGCTTTCGAGGGTGAACATCCTTTTCATAACTATACAGTGCGATCTAAATACAGGAAAAGACTTTCTGGGAAGAAATCACCTATATACCGCAATATGTCAAAAACAGAAAGATCAACTGTTGAGGCATCAGCCTCCGAGCTTGAGGGAAGTGACGATGAAGATGAGTTCGAGGGAGAAAATACAACAGAAACTGAGGTGCTGAACCAAAATTCTTTCCTGTCCAGCAATGGGAATGAAAACTTACTGAAAGCATGCAAGAAGCAGGAAGATGGTCTGAAGGAGAAAAGTACTGATTCAGTTATCCGTGCTAAATGGTTATACGAACATGATGAGAGCGATAGAATCGGTGCTTCTCATTTCAGAAAGATATTTCGCTGTTCTTGTGGAAAGCTTGAAAAATCGCTGGCACATGAGTATGTTGAGCTCTCCATATGGGGAGAGTCTTTCATGTTACATCAATCATTGGCTGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

379

Amino Acids

43.09

Weight (kDa)

7.63

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30320
fragaria_vesca	FvH4_3g40070 FvH4_3g40070 FvH4_3g40070
malus_domestica	MD11G1060800.v1.1
prunus_persica	Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1
pyrus_communis	pycom11g05030
rosa_chinensis	RchiOBHm_Chr5g0072261
rosa_laevigata	RLG00000036289
rosa_multiflora	Rmu_sc0000714.1_g000004
rosa_roxburghii	Rroxscaffold_1G00009010
rosa_rugosa	Rorug05G0417100 Rorug05G0417200 Rorug05G0417300
rosa_samantha	Rh5AG473100 Rh5BG493300 Rh5CG517300 Rh5DG505300
rosa_wichuraiana	Rw5G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	526
AccB1I	GGYRCC	1 cut(s)	215
AccII	CGCG	1 cut(s)	315
AciI	CCGC	2 cut(s)	154, 751
AclWI	GGATC	1 cut(s)	530
AcsI	RAATTY	2 cut(s)	501, 871
AcuI	CTGAAG	1 cut(s)	959
AfaI	GTAC	1 cut(s)	952
AfiI	CCNNNNNNNGG	1 cut(s)	891
AgsI	TTSAA	8 cut(s)	75, 100, 258, 272, 298, 409, 649, 1058
AhdI	GACNNNNNGTC	1 cut(s)	26
AluBI	AGCT	6 cut(s)	63, 531, 620, 802, 1054, 1087
AluI	AGCT	6 cut(s)	63, 531, 620, 802, 1054, 1087
Alw21I	GWGCWC	1 cut(s)	1089
Alw26I	GTCTC	2 cut(s)	34, 435
AlwI	GGATC	1 cut(s)	530
AlwNI	CAGNNNCTG	1 cut(s)	854
AoxI	GGCC	2 cut(s)	300, 351
ApeKI	GCWGC	4 cut(s)	114, 128, 360, 1130
ApoI	RAATTY	2 cut(s)	501, 871
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	2 cut(s)	26, 200
AsuHPI	GGTGA	2 cut(s)	686, 732
AsuII	TTCGAA	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	1089
BbsI	GAAGAC	1 cut(s)	3
Bbv12I	GWGCWC	1 cut(s)	1089
BbvI	GCAGC	4 cut(s)	101, 115, 372, 1117
BccI	CCATC	1 cut(s)	926
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BclI	TGATCA	1 cut(s)	631
BcnI	CCSGG	2 cut(s)	26, 200
BcoDI	GTCTC	2 cut(s)	34, 435
BfuAI	ACCTGC	1 cut(s)	526
BisI	GCNGC	4 cut(s)	115, 129, 361, 1131
BlsI	GCNGC	4 cut(s)	116, 130, 362, 1132
BmcAI	AGTACT	1 cut(s)	952
Bme1390I	CCNGG	2 cut(s)	26, 200
BmeRI	GACNNNNNGTC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	217, 332
BmrFI	CCNGG	2 cut(s)	26, 200
BmsI	GCATC	1 cut(s)	797
BpiI	GAAGAC	1 cut(s)	3
Bpu14I	TTCGAA	1 cut(s)	178
BpuEI	CTTGAG	2 cut(s)	76, 824
BpuMI	CCSGG	2 cut(s)	26, 200
BsaI	GGTCTC	2 cut(s)	34, 435
BsaJI	CCNNGG	2 cut(s)	226, 387
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	891
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	285
Bse3DI	GCAATG	3 cut(s)	453, 636, 895
BseDI	CCNNGG	2 cut(s)	226, 387
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	1 cut(s)	891
BseMI	GCAATG	3 cut(s)	453, 636, 895
BseMII	CTCAG	1 cut(s)	846
BseNI	ACTGG	1 cut(s)	285
BseRI	GAGGAG	1 cut(s)	541
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	4 cut(s)	101, 115, 372, 1117
BsgI	GTGCAG	1 cut(s)	504
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	302, 353
BshNI	GGYRCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	1089
BsiSI	CCGG	3 cut(s)	26, 199, 303
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	891
BsmAI	GTCTC	2 cut(s)	34, 435
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	2 cut(s)	302, 353
Bso31I	GGTCTC	2 cut(s)	34, 435
Bsp119I	TTCGAA	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	218, 1089
Bsp143I	GATC	4 cut(s)	535, 631, 704, 773
Bsp68I	TCGCGA	1 cut(s)	315
BspACI	CCGC	2 cut(s)	154, 751
BspANI	GGCC	2 cut(s)	302, 353
BspCNI	CTCAG	1 cut(s)	847
BspFNI	CGCG	1 cut(s)	315
BspLI	GGNNCC	2 cut(s)	217, 332
BspMI	ACCTGC	1 cut(s)	526
BspPI	GGATC	1 cut(s)	530
BspT104I	TTCGAA	1 cut(s)	178
BspT107I	GGYRCC	1 cut(s)	215
BspTNI	GGTCTC	2 cut(s)	34, 435
BsrDI	GCAATG	3 cut(s)	453, 636, 895
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	226, 387
BssMI	GATC	4 cut(s)	535, 631, 704, 773
BssT1I	CCWWGG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	700, 781
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	916, 1068
BstDEI	CTNAG	2 cut(s)	855, 1137
BstF5I	GGATG	1 cut(s)	679
BstFNI	CGCG	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	4 cut(s)	538, 634, 707, 776
BstMAI	GTCTC	2 cut(s)	34, 435
BstMBI	GATC	4 cut(s)	535, 631, 704, 773
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 134
BstNSI	RCATGY	1 cut(s)	918
BstSCI	CCNGG	2 cut(s)	24, 198
BstSLI	GKGCMC	1 cut(s)	218
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	4 cut(s)	101, 115, 372, 1117
BstV2I	GAAGAC	1 cut(s)	3
BsuRI	GGCC	2 cut(s)	302, 353
BtsCI	GGATG	1 cut(s)	679
BtsI	GCAGTG	2 cut(s)	14, 132
BtsIMutI	CAGTG	4 cut(s)	14, 132, 156, 705
BtuMI	TCGCGA	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	526
Cac8I	GCNNGC	2 cut(s)	916, 1068
CaiI	CAGNNNCTG	1 cut(s)	854
CfoI	GCGC	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	951
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	4 cut(s)	915, 989, 1073, 1111
CviQI	GTAC	1 cut(s)	951
DdeI	CTNAG	2 cut(s)	855, 1137
DpnI	GATC	4 cut(s)	537, 633, 706, 775
DpnII	GATC	4 cut(s)	535, 631, 704, 773
DriI	GACNNNNNGTC	1 cut(s)	26
Eam1105I	GACNNNNNGTC	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	1087
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	1089
Eco31I	GGTCTC	2 cut(s)	34, 435
Eco32I	GATATC	1 cut(s)	402
Eco53kI	GAGCTC	1 cut(s)	1087
Eco57I	CTGAAG	1 cut(s)	959
EcoICRI	GAGCTC	1 cut(s)	1087
EcoRV	GATATC	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	1089
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	4 cut(s)	918, 992, 1076, 1114
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	4 cut(s)	914, 988, 1072, 1110
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	1094
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	4 cut(s)	115, 129, 361, 1131
FokI	GGATG	1 cut(s)	666
FriOI	GRGCYC	1 cut(s)	1089
Fsp4HI	GCNGC	4 cut(s)	115, 129, 361, 1131
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	4 cut(s)	115, 129, 361, 1131
HaeIII	GGCC	2 cut(s)	302, 353
HapII	CCGG	3 cut(s)	26, 199, 303
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	918, 992, 1076, 1114
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HindIII	AAGCTT	1 cut(s)	1052
HinfI	GANTC	6 cut(s)	21, 466, 597, 956, 1005, 1103
HpaII	CCGG	3 cut(s)	26, 199, 303
HphI	GGTGA	2 cut(s)	686, 732
Hpy166II	GTNNAC	2 cut(s)	382, 677
Hpy188I	TCNGA	3 cut(s)	799, 939, 1025
Hpy188III	TCNNGA	3 cut(s)	93, 314, 328
Hpy8I	GTNNAC	2 cut(s)	382, 677
HpyAV	CCTTC	4 cut(s)	264, 494, 587, 934
HpyCH4III	ACNGT	2 cut(s)	700, 781
HpyCH4V	TGCA	5 cut(s)	235, 241, 521, 641, 918
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 134
HpyF3I	CTNAG	2 cut(s)	855, 1137
Hsp92II	CATG	4 cut(s)	918, 992, 1076, 1114
HspAI	GCGC	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	4 cut(s)	535, 631, 704, 773
LmnI	GCTCC	2 cut(s)	122, 528
Lsp1109I	GCAGC	4 cut(s)	101, 115, 372, 1117
LweI	GCATC	1 cut(s)	797
MaeIII	GTNAC	4 cut(s)	479, 605, 812, 1113
MalI	GATC	4 cut(s)	537, 633, 706, 775
MboI	GATC	4 cut(s)	535, 631, 704, 773
MboII	GAAGA	5 cut(s)	3, 196, 745, 833, 941
MfeI	CAATTG	1 cut(s)	475
MhlI	GDGCHC	2 cut(s)	218, 1089
MluCI	AATT	5 cut(s)	322, 475, 501, 624, 871
MlyI	GAGTC	2 cut(s)	15, 1112
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	1 cut(s)	1077
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	3 cut(s)	26, 199, 303
MspR9I	CCNGG	2 cut(s)	26, 200
MunI	CAATTG	1 cut(s)	475
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	2 cut(s)	123, 134
NciI	CCSGG	2 cut(s)	26, 200
NdeI	CATATG	1 cut(s)	1094
NdeII	GATC	4 cut(s)	535, 631, 704, 773
NlaIII	CATG	4 cut(s)	918, 992, 1076, 1114
NlaIV	GGNNCC	2 cut(s)	217, 332
NmuCI	GTSAC	2 cut(s)	605, 812
NruI	TCGCGA	1 cut(s)	315
NspI	RCATGY	1 cut(s)	918
NspV	TTCGAA	1 cut(s)	178
PaeI	GCATGC	1 cut(s)	918
PfeI	GAWTC	4 cut(s)	466, 597, 956, 1005
PkrI	GCNGC	4 cut(s)	116, 130, 362, 1132
PleI	GAGTC	2 cut(s)	15, 1111
PpsI	GAGTC	2 cut(s)	15, 1111
Psp124BI	GAGCTC	1 cut(s)	1089
PspN4I	GGNNCC	2 cut(s)	217, 332
PspPI	GGNCC	1 cut(s)	351
PsrI	GAACNNNNNNTAC	2 cut(s)	92, 124
PstNI	CAGNNNCTG	1 cut(s)	854
PvuII	CAGCTG	1 cut(s)	620
RruI	TCGCGA	1 cut(s)	315
RsaI	GTAC	1 cut(s)	952
RsaNI	GTAC	1 cut(s)	951
RseI	CAYNNNNRTG	1 cut(s)	1077
SacI	GAGCTC	1 cut(s)	1089
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	4 cut(s)	115, 129, 361, 1131
Sau3AI	GATC	4 cut(s)	535, 631, 704, 773
Sau96I	GGNCC	1 cut(s)	351
ScaI	AGTACT	1 cut(s)	952
SchI	GAGTC	2 cut(s)	15, 1112
ScrFI	CCNGG	2 cut(s)	26, 200
SduI	GDGCHC	2 cut(s)	218, 1089
SfaNI	GCATC	1 cut(s)	797
SfuI	TTCGAA	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	1077
SmlI	CTYRAG	2 cut(s)	91, 803
SmoI	CTYRAG	2 cut(s)	91, 803
SphI	GCATGC	1 cut(s)	918
Sse9I	AATT	5 cut(s)	322, 475, 501, 624, 871
SsiI	CCGC	2 cut(s)	154, 751
SstI	GAGCTC	1 cut(s)	1089
StyD4I	CCNGG	2 cut(s)	24, 198
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	2 cut(s)	700, 781
TaqI	TCGA	3 cut(s)	178, 669, 831
TasI	AATT	5 cut(s)	322, 475, 501, 624, 871
TatI	WGTACW	1 cut(s)	950
TfiI	GAWTC	4 cut(s)	466, 597, 956, 1005
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	4 cut(s)	21, 139, 163, 705
TseFI	GTSAC	2 cut(s)	605, 812
TseI	GCWGC	4 cut(s)	114, 128, 360, 1130
Tsp45I	GTSAC	2 cut(s)	605, 812
TspDTI	ATGAA	5 cut(s)	558, 677, 834, 912, 1099
TspGWI	ACGGA	3 cut(s)	453, 548, 956
TspRI	CASTG	4 cut(s)	21, 139, 163, 705
XapI	RAATTY	2 cut(s)	501, 871
XceI	RCATGY	1 cut(s)	918
ZrmI	AGTACT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.