Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007446

Physical Location & Seq

Genomic Coordinates Forward (+)

3261262 .. 3264942

Gene Structure 3681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G045100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGGCTATCTCTTCTCTGCGACTCCCGTTCTCGCTGTGGCTTCCAAGGCTCCCAATTCAGAGCTTCCGTTTCTCAAAACCAATTTTACCCCTTAGATTGAACCTTATTTACTGCTCCTCCTCCATCTCCTCTACTGCTCAACAAACCTCAACCCACCTTGAGAAATGGCAATCCGTTCGAAAGAAGAAAGTGGTTCTCCGGGTCGGGTACGTCGGCTCCGATTACCGAGGCTTGCAAATGCAACGAGACGAACATTCGTTATCTACTATTGAAAAAGAACTGGAAACAGCCATATTCAATGCCGGCGGTATCCGCGATAGTAATCTCGGGAACCTTAACAAGATTGCGTGGGCCAGAAGTAGCCGAACAGATAAAGGAGTTCACTCATTAGCGACGATGATATCATTTAAAATGGAAATCCCTGAGAAAGCATGGGATGGAGACCCTTATGGCATTGCCCTTGTGAATCACATTAACTATTATCTTCCTCATAATATCAAAGTTTTTAGCATTTTGCCTGCGCAGAGGAGCTTTGATCCTAGAAAGGAGTGTAATCTCCGCATGTATTCATACCTCCTTCCTGCTGATGTTATTGGAATCAAAAGCCACTTCAGCTCAGCAGAAATTGATTATCACATCTCAGACTTCAATAGTATACTAAATTGTTTCGAGGGAGAACATCCTTTTCATAATTATACCATACGATCTAAATACAGGAGGAAGCTTCCTGTAAAAAAATCACGTAGACATGGAAGTGTGTCAATAACAGGGAGATCAACTGGAGAGGCATCAGCATCTGAGTCTGAGGAAAGTGATGTGGATGAAAATTTTGATGGAACAAATACACCAGAATCAGATGCCGAGGTACTGAACCAAAATTCTTCACCGTCTAGCAATAGTGAGGGGAACTTACGCAATGCTTGCGAGAAGCAGGGAGATGGTGGCAACGATCAAAGTGCTGGTTCAGTCATCCGTGCAAGATGGTTATATGAACCAGATGAAAGAGATAGAATAAGTGCTTCTCATTTCAGAAAGATTTTTCTCTGTTCTTGTGGGAAGCTAGAGAAATCGCTTGGACATGATTATGTTGAGCTTTCCATTTCGGGAGAGTCTTTCATGTTACATCAAATTCGCAAAATGGTTGGAACTGCTGTGGCCATAAAGCGCAAGTTACTCCCAAGAGATATTTTGACATTATCACTGGCCATGTTCTCACGGATAATCCTACCACTTGCCCCATCTGAAGTTTTGTTTTTAAGAGGAAACAGATTTTCAATCAGAGGACGACCTGGAAATGTAACAAGGCCTGAAATGATGGCAATGGTTGAATCAGGAGAAATTATTAAGGCAGTTGACGAGTTCTACACATCTGTTATGTTGCCTGAAGTTTCAAAGTTCTTAGAACCTTCAGGATATCCTTGGAAAGAATGGGTTGAAAACTTAGATAGAAACACAGGCATTCCTGATGCAGAATTGGATGAAGTCAGGAATGCTTGGAAAGTGTGGAAAGAAAAGTTTGACAGTGTTGCACCAGTCCTAAACCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

516

Amino Acids

58.3

Weight (kDa)

8.68

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30320
fragaria_vesca	FvH4_3g40070 FvH4_3g40070 FvH4_3g40070
malus_domestica	MD11G1060800.v1.1
prunus_persica	Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1
pyrus_communis	pycom11g05030
rosa_chinensis	RchiOBHm_Chr5g0072261
rosa_laevigata	RLG00000036289
rosa_multiflora	Rmu_sc0000714.1_g000004
rosa_roxburghii	Rroxscaffold_1G00009010
rosa_rugosa	Rorug05G0417100 Rorug05G0417200 Rorug05G0417300
rosa_samantha	Rh5AG473100 Rh5BG493300 Rh5CG517300 Rh5DG505300
rosa_wichuraiana	Rw5G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	522
AccI	GTMKAC	2 cut(s)	655, 745
AccII	CGCG	1 cut(s)	315
AciI	CCGC	3 cut(s)	306, 313, 559
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	2 cut(s)	1155, 1203
AcsI	RAATTY	3 cut(s)	826, 877, 1128
AcuI	CTGAAG	4 cut(s)	595, 1263, 1392, 1404
AfaI	GTAC	2 cut(s)	209, 867
AgsI	TTSAA	8 cut(s)	100, 272, 298, 649, 1275, 1328, 1392, 1436
AjnI	CCWGG	1 cut(s)	1288
AluBI	AGCT	6 cut(s)	63, 531, 615, 724, 1060, 1093
AluI	AGCT	6 cut(s)	63, 531, 615, 724, 1060, 1093
Alw26I	GTCTC	2 cut(s)	240, 435
AlwI	GGATC	1 cut(s)	530
AlwNI	CAGNNNCTG	1 cut(s)	797
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	4 cut(s)	351, 1155, 1203, 1304
ApoI	RAATTY	3 cut(s)	826, 877, 1128
AspLEI	GCGC	2 cut(s)	523, 1167
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	876
AsuII	TTCGAA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	326
BalI	TGGCCA	2 cut(s)	1157, 1205
BccI	CCATC	7 cut(s)	131, 431, 827, 932, 975, 1246, 1309
BcgI	CGANNNNNNTGC	4 cut(s)	158, 192, 938, 972
BciT130I	CCWGG	1 cut(s)	1290
BciVI	GTATCC	1 cut(s)	320
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	240, 435
BfaI	CTAG	3 cut(s)	540, 891, 1061
BfuI	GTATCC	1 cut(s)	320
BlpI	GCTNAGC	1 cut(s)	616
Bme1390I	CCNGG	2 cut(s)	200, 1290
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	3 cut(s)	50, 217, 332
BmrFI	CCNGG	2 cut(s)	200, 1290
BmsI	GCATC	4 cut(s)	797, 803, 847, 1456
BpmI	CTGGAG	1 cut(s)	801
Bpu1102I	GCTNAGC	1 cut(s)	616
Bpu14I	TTCGAA	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	200
BsaAI	YACGTR	1 cut(s)	743
BsaBI	GATNNNNATC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	435
BsaJI	CCNNGG	4 cut(s)	44, 226, 861, 1418
BsaXI	ACNNNNNCTCC	4 cut(s)	101, 131, 200, 230
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	4 cut(s)	285, 784, 1206, 1532
Bse3DI	GCAATG	3 cut(s)	453, 922, 1326
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	1290
BseDI	CCNNGG	4 cut(s)	44, 226, 861, 1418
BseGI	GGATG	5 cut(s)	442, 679, 826, 969, 1483
BseJI	GATNNNNATC	1 cut(s)	321
BseMI	GCAATG	3 cut(s)	453, 922, 1326
BseMII	CTCAG	5 cut(s)	414, 630, 654, 789, 795
BseNI	ACTGG	4 cut(s)	285, 784, 1206, 1532
BseRI	GAGGAG	4 cut(s)	106, 109, 118, 541
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	4 cut(s)	353, 1157, 1205, 1306
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	199, 303
BsmAI	GTCTC	2 cut(s)	240, 435
BsmBI	CGTCTC	1 cut(s)	240
BsmI	GAATGC	2 cut(s)	1458, 1495
BsnI	GGCC	4 cut(s)	353, 1157, 1205, 1306
Bso31I	GGTCTC	1 cut(s)	435
BsoBI	CYCGRG	1 cut(s)	326
Bsp119I	TTCGAA	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	535, 704, 773, 949
Bsp1720I	GCTNAGC	1 cut(s)	616
BspACI	CCGC	3 cut(s)	306, 313, 559
BspANI	GGCC	4 cut(s)	353, 1157, 1205, 1306
BspCNI	CTCAG	5 cut(s)	415, 629, 653, 790, 796
BspFNI	CGCG	1 cut(s)	315
BspLI	GGNNCC	3 cut(s)	50, 217, 332
BspPI	GGATC	1 cut(s)	530
BspT104I	TTCGAA	1 cut(s)	178
BspTNI	GGTCTC	1 cut(s)	435
BsrDI	GCAATG	3 cut(s)	453, 922, 1326
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	4 cut(s)	285, 784, 1206, 1532
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	4 cut(s)	44, 226, 861, 1418
BssMI	GATC	4 cut(s)	535, 704, 773, 949
BssNAI	GTATAC	1 cut(s)	656
BssT1I	CCWWGG	2 cut(s)	44, 1418
Bst1107I	GTATAC	1 cut(s)	656
Bst2UI	CCWGG	1 cut(s)	1290
Bst4CI	ACNGT	2 cut(s)	888, 1523
Bst6I	CTCTTC	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	921
BstBAI	YACGTR	1 cut(s)	743
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	4 cut(s)	233, 304, 519, 922
BstDEI	CTNAG	8 cut(s)	92, 423, 616, 640, 798, 804, 1399, 1441
BstF5I	GGATG	5 cut(s)	442, 679, 826, 969, 1483
BstFNI	CGCG	1 cut(s)	315
BstHHI	GCGC	2 cut(s)	523, 1167
BstKTI	GATC	4 cut(s)	538, 707, 776, 952
BstMAI	GTCTC	2 cut(s)	240, 435
BstMBI	GATC	4 cut(s)	535, 704, 773, 949
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 312, 612, 921
BstNI	CCWGG	1 cut(s)	1290
BstNSI	RCATGY	1 cut(s)	565
BstSCI	CCNGG	2 cut(s)	198, 1288
BstUI	CGCG	1 cut(s)	315
BstZ17I	GTATAC	1 cut(s)	656
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	4 cut(s)	353, 1157, 1205, 1306
BtsCI	GGATG	5 cut(s)	442, 679, 826, 969, 1483
BtsIMutI	CAGTG	2 cut(s)	1199, 1528
Cac8I	GCNNGC	4 cut(s)	233, 304, 519, 922
CaiI	CAGNNNCTG	1 cut(s)	797
CfoI	GCGC	2 cut(s)	523, 1167
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	208, 866
CviAII	CATG	6 cut(s)	432, 562, 749, 1079, 1117, 1207
CviQI	GTAC	2 cut(s)	208, 866
DdeI	CTNAG	8 cut(s)	92, 423, 616, 640, 798, 804, 1399, 1441
DpnI	GATC	4 cut(s)	537, 706, 775, 951
DpnII	GATC	4 cut(s)	535, 704, 773, 949
DraI	TTTAAA	1 cut(s)	409
EaeI	YGGCCR	2 cut(s)	1155, 1203
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	44, 1418
Eco147I	AGGCCT	1 cut(s)	1306
Eco31I	GGTCTC	1 cut(s)	435
Eco32I	GATATC	2 cut(s)	402, 1415
Eco57I	CTGAAG	4 cut(s)	595, 1263, 1392, 1404
Eco88I	CYCGRG	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	1288
EcoRV	GATATC	2 cut(s)	402, 1415
EcoT14I	CCWWGG	2 cut(s)	44, 1418
ErhI	CCWWGG	2 cut(s)	44, 1418
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	6 cut(s)	435, 565, 752, 1082, 1120, 1210
FatI	CATG	6 cut(s)	431, 561, 748, 1078, 1116, 1206
FblI	GTMKAC	2 cut(s)	655, 745
FokI	GGATG	5 cut(s)	449, 666, 833, 956, 1490
FspBI	CTAG	3 cut(s)	540, 891, 1061
FspI	TGCGCA	1 cut(s)	522
GlaI	GCGC	2 cut(s)	522, 1166
GsuI	CTGGAG	1 cut(s)	801
HaeIII	GGCC	4 cut(s)	353, 1157, 1205, 1306
HapII	CCGG	2 cut(s)	199, 303
HhaI	GCGC	2 cut(s)	523, 1167
Hin1II	CATG	6 cut(s)	435, 565, 752, 1082, 1120, 1210
Hin6I	GCGC	2 cut(s)	521, 1165
HinP1I	GCGC	2 cut(s)	521, 1165
HincII	GTYRAC	1 cut(s)	1354
HindII	GTYRAC	1 cut(s)	1354
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	7 cut(s)	21, 466, 597, 800, 851, 1109, 1328
HpaII	CCGG	2 cut(s)	199, 303
HphI	GGTGA	1 cut(s)	876
Hpy166II	GTNNAC	4 cut(s)	382, 656, 746, 1354
Hpy188I	TCNGA	9 cut(s)	60, 220, 643, 799, 805, 856, 1031, 1243, 1280
Hpy188III	TCNNGA	6 cut(s)	328, 1104, 1332, 1410, 1463, 1486
Hpy8I	GTNNAC	4 cut(s)	382, 656, 746, 1354
Hpy99I	CGWCG	2 cut(s)	215, 397
HpyAV	CCTTC	2 cut(s)	587, 1416
HpyCH4III	ACNGT	2 cut(s)	888, 1523
HpyCH4IV	ACGT	2 cut(s)	210, 742
HpyCH4V	TGCA	5 cut(s)	235, 241, 977, 1469, 1529
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 312, 612, 921
HpyF3I	CTNAG	8 cut(s)	92, 423, 616, 640, 798, 804, 1399, 1441
HpySE526I	ACGT	2 cut(s)	210, 742
Hsp92II	CATG	6 cut(s)	435, 565, 752, 1082, 1120, 1210
HspAI	GCGC	2 cut(s)	521, 1165
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	535, 704, 773, 949
LmnI	GCTCC	4 cut(s)	54, 119, 221, 528
LweI	GCATC	4 cut(s)	797, 803, 847, 1456
MaeI	CTAG	3 cut(s)	540, 891, 1061
MaeII	ACGT	2 cut(s)	210, 742
MaeIII	GTNAC	3 cut(s)	1119, 1170, 1297
MalI	GATC	4 cut(s)	537, 706, 775, 951
MboI	GATC	4 cut(s)	535, 704, 773, 949
MboII	GAAGA	4 cut(s)	3, 196, 476, 873
MlsI	TGGCCA	2 cut(s)	1157, 1205
MluNI	TGGCCA	2 cut(s)	1157, 1205
MlyI	GAGTC	3 cut(s)	15, 809, 1118
MmeI	TCCRAC	1 cut(s)	1123
Mox20I	TGGCCA	2 cut(s)	1157, 1205
MroNI	GCCGGC	1 cut(s)	302
MscI	TGGCCA	2 cut(s)	1157, 1205
MseI	TTAA	5 cut(s)	336, 408, 474, 1256, 1344
MslI	CAYNNNNRTG	2 cut(s)	753, 1083
Msp20I	TGGCCA	2 cut(s)	1157, 1205
MspI	CCGG	2 cut(s)	199, 303
MspR9I	CCNGG	2 cut(s)	200, 1290
Mva1269I	GAATGC	2 cut(s)	1458, 1495
MvaI	CCWGG	1 cut(s)	1290
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	4 cut(s)	46, 312, 612, 921
NaeI	GCCGGC	1 cut(s)	304
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	4 cut(s)	535, 704, 773, 949
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	6 cut(s)	435, 565, 752, 1082, 1120, 1210
NlaIV	GGNNCC	3 cut(s)	50, 217, 332
NmeAIII	GCCGAG	1 cut(s)	886
NsbI	TGCGCA	1 cut(s)	522
NspI	RCATGY	1 cut(s)	565
NspV	TTCGAA	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	1306
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	2 cut(s)	1458, 1495
PdiI	GCCGGC	1 cut(s)	304
PfeI	GAWTC	4 cut(s)	466, 597, 851, 1328
PleI	GAGTC	3 cut(s)	15, 808, 1117
PpsI	GAGTC	3 cut(s)	15, 808, 1117
Ppu21I	YACGTR	1 cut(s)	743
Psp6I	CCWGG	1 cut(s)	1288
PspGI	CCWGG	1 cut(s)	1288
PspN4I	GGNNCC	3 cut(s)	50, 217, 332
PspPI	GGNCC	1 cut(s)	351
PsrI	GAACNNNNNNTAC	2 cut(s)	92, 124
PstNI	CAGNNNCTG	1 cut(s)	797
RsaI	GTAC	2 cut(s)	209, 867
RsaNI	GTAC	2 cut(s)	208, 866
RseI	CAYNNNNRTG	2 cut(s)	753, 1083
SaqAI	TTAA	5 cut(s)	336, 408, 474, 1256, 1344
Sau3AI	GATC	4 cut(s)	535, 704, 773, 949
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	3 cut(s)	15, 809, 1118
ScrFI	CCNGG	2 cut(s)	200, 1290
SfaNI	GCATC	4 cut(s)	797, 803, 847, 1456
SfuI	TTCGAA	1 cut(s)	178
SmiMI	CAYNNNNRTG	2 cut(s)	753, 1083
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SseBI	AGGCCT	1 cut(s)	1306
SsiI	CCGC	3 cut(s)	306, 313, 559
SspMI	CTAG	3 cut(s)	540, 891, 1061
StuI	AGGCCT	1 cut(s)	1306
StyD4I	CCNGG	2 cut(s)	198, 1288
StyI	CCWWGG	2 cut(s)	44, 1418
TaaI	ACNGT	2 cut(s)	888, 1523
TaiI	ACGT	2 cut(s)	213, 745
TaqI	TCGA	2 cut(s)	178, 669
TfiI	GAWTC	4 cut(s)	466, 597, 851, 1328
Tru1I	TTAA	5 cut(s)	336, 408, 474, 1256, 1344
Tru9I	TTAA	5 cut(s)	336, 408, 474, 1256, 1344
TscAI	CASTG	2 cut(s)	1206, 1528
TspDTI	ATGAA	7 cut(s)	558, 677, 837, 1005, 1014, 1105, 1494
TspGWI	ACGGA	4 cut(s)	56, 163, 962, 1231
TspRI	CASTG	2 cut(s)	1206, 1528
XapI	RAATTY	3 cut(s)	826, 877, 1128
XceI	RCATGY	1 cut(s)	565
XmiI	GTMKAC	2 cut(s)	655, 745
XspI	CTAG	3 cut(s)	540, 891, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.