Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007446

Physical Location & Seq

Genomic Coordinates Reverse (-)

3912133 .. 3914874

Gene Structure 2742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g05030.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1587 bp

ATGGCCGTCTCCTCACTGCGACTCCCCTTCTCCCTCTGCCTCCCAAAGTTCCCATCTCGCACCTTCCATTTTTCAAAGCCAATTTTACCCCTCAGACTCAACCTTATTTACTGCTGCTCCTCCTCCTCCCTCTATACGCCCGAACAAACCTCAACCAGCTCCGGTCACAAATGGCAGTCCGTCCGAAAGAGGAAAGTGGTTCTCCGGGTCGGGTACGTCGGCACCGAGTACCGAGGCTTGCAAATGCAACGAGACGAAAATTCATTATCCACTATTGAGAAAGAGTTGGAAACTGCCATATACAACGCGGGCGGTATCCGTGAGAGTAATCTGGGGAACCTTAACAAGATTGCGTGGGCCAGGAGTAGCCGGACTGATAAAGGAGTTCACTCTTTAGCAACGATGATATCATTGAAAATGGAAATCCCAGAGAATGCATGGGTCGGAGACCCTTTTGGCATGGATCTTGTGAATCACATTAACTCTTATCTGCCTCGTAATATCAAAGTTTTCAGCATTTTGCCTGCGCAGAGGAGCTTTGATCCTAGAAAGGAGTGTAATCTCCGCATGTATTCATACCTCCTTCCTGCTGAGGTTATTGGAATCAAAAGTCACTTCAACGCAGATGAAATTGATTATCACATCTCAGACTTCAATAATATACTAAAAGCTTTCGAGGGAGAACATCCTTTTCATAATTATACTATACGATCTAAATACAGGTCGAAGTATCCTGCAAAACAATCACCCAAACATGGAAAAGTGTTGATAGCAGGTAGATCAACCAGAGAGGCAACAGCCTCTGAGTCTGAGTCTGAGGAAAGTGACAGGGAAGAATATTTTGATGAAACATATGCATCAGAATCAAATTCTGAGGAACTGAACCAAATTTCTTCGTTTTCTAGCAATAGTGAGGACAGCTTACTCGATGCTTGCAAGAAGCAGGGAGATGTTCTAAAGGTTCAAAGTGCTGGTTCGGTCATCCGTGCAAGATGGTTATTTGAACCTGATGAAGGAGATAGAATTGGTGCTTCTCATTTCAGAAAGATTTTTCAGTGCTCTTGTGGGAAGCTGGAGAAATCGCTTGGACATGATTATGTTGAAGTTTCCATATGGGGAGAATCTTTCATGTTACATCAAATCCGCAAAATGGTTGGAACTGCTGTGGCTATAAAGCGCGAGTTACTCCCTAGAGATATTTTGACAATGTCACTGGCCAAGTTTTCCCGGATAGTCCTACCACTTGCCCCATCTGAAGTTTTGTTTTTAAGAGGGAACAGGTTTTCAATTAGAGTAAAAAATGTAACAAGGCCTGAAATGACGACAATGGTTGAATCAGAAGAAATAAATAAGGCGGTTGACGAGTTCTTCATATCTGTTATGTTGCCTCAAGTTACAAAGTTCTTAGATCCTTCAGGATATCCTTGGAATGAATGGGTTGAGAATTTGGATAGAAACACAGGCATTCCAGATGCAGAATTGGATGAAGTCAGGAACGCTTGGAAAGTGTGGAGGGAAAAGTTTGACGGTTTTGCATCAGTCCGAAACCAAAGAGACAAGGTAGATGCCGATGATTGCAATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_1

Protein Analysis

529

Amino Acids

60.22

Weight (kDa)

7.19

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30320
fragaria_vesca	FvH4_3g40070 FvH4_3g40070 FvH4_3g40070
malus_domestica	MD11G1060800.v1.1
prunus_persica	Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1 Prupe.6G045100_v2.0.a1
pyrus_communis	pycom11g05030
rosa_chinensis	RchiOBHm_Chr5g0072261
rosa_laevigata	RLG00000036289
rosa_multiflora	Rmu_sc0000714.1_g000004
rosa_roxburghii	Rroxscaffold_1G00009010
rosa_rugosa	Rorug05G0417100 Rorug05G0417200 Rorug05G0417300
rosa_samantha	Rh5AG473100 Rh5BG493300 Rh5CG517300 Rh5DG505300
rosa_wichuraiana	Rw5G043960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	528
Acc36I	ACCTGC	1 cut(s)	764
AccB1I	GGYRCC	1 cut(s)	221
AccII	CGCG	2 cut(s)	308, 1179
AciI	CCGC	5 cut(s)	308, 312, 565, 1144, 1355
AclWI	GGATC	3 cut(s)	471, 536, 1403
AcoI	YGGCCR	2 cut(s)	3, 1215
AcsI	RAATTY	4 cut(s)	259, 868, 888, 1444
AcuI	CTGAAG	2 cut(s)	1275, 1398
AfaI	GTAC	2 cut(s)	215, 230
AfiI	CCNNNNNNNGG	3 cut(s)	755, 1013, 1150
AgsI	TTSAA	9 cut(s)	75, 415, 619, 655, 965, 1004, 1103, 1287, 1334
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	5 cut(s)	159, 537, 671, 921, 1072
AluI	AGCT	5 cut(s)	159, 537, 671, 921, 1072
Alw21I	GWGCWC	1 cut(s)	1061
Alw26I	GTCTC	4 cut(s)	13, 246, 441, 1548
AlwI	GGATC	3 cut(s)	471, 536, 1403
AlwNI	CAGNNNCTG	1 cut(s)	803
AoxI	GGCC	4 cut(s)	3, 357, 1215, 1310
ApeKI	GCWGC	1 cut(s)	114
ApoI	RAATTY	4 cut(s)	259, 868, 888, 1444
AspLEI	GCGC	2 cut(s)	529, 1179
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	2 cut(s)	206, 1228
AsuHPI	GGTGA	1 cut(s)	738
BalI	TGGCCA	1 cut(s)	1217
BanI	GGYRCC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	1061
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	3 cut(s)	61, 987, 1258
BciT130I	CCWGG	1 cut(s)	361
BciVI	GTATCC	2 cut(s)	326, 741
BcnI	CCSGG	2 cut(s)	206, 1228
BcoDI	GTCTC	4 cut(s)	13, 246, 441, 1548
BfaI	CTAG	3 cut(s)	546, 903, 1191
BfuAI	ACCTGC	1 cut(s)	764
BfuI	GTATCC	2 cut(s)	326, 741
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	3 cut(s)	206, 361, 1228
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	2 cut(s)	223, 338
BmrFI	CCNGG	3 cut(s)	206, 361, 1228
BmsI	GCATC	5 cut(s)	866, 919, 1462, 1544, 1555
BpmI	CTGGAG	1 cut(s)	1094
Bpu10I	CCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	1 cut(s)	1374
BpuMI	CCSGG	2 cut(s)	206, 1228
BsaI	GGTCTC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	232, 1424
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 101, 131
Bsc4I	CCNNNNNNNGG	3 cut(s)	755, 1013, 1150
Bse1I	ACTGG	1 cut(s)	1218
Bse3DI	GCAATG	1 cut(s)	1585
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	2 cut(s)	232, 1424
BseGI	GGATG	3 cut(s)	685, 981, 1489
BseLI	CCNNNNNNNGG	3 cut(s)	755, 1013, 1150
BseMI	GCAATG	1 cut(s)	1585
BseMII	CTCAG	7 cut(s)	106, 582, 660, 795, 801, 807, 864
BseNI	ACTGG	1 cut(s)	1218
BseRI	GAGGAG	4 cut(s)	109, 112, 115, 547
BseXI	GCAGC	1 cut(s)	101
Bsh1236I	CGCG	2 cut(s)	308, 1179
BshFI	GGCC	4 cut(s)	5, 359, 1217, 1312
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	1061
BsiSI	CCGG	4 cut(s)	162, 205, 370, 1228
BslI	CCNNNNNNNGG	3 cut(s)	755, 1013, 1150
BsmAI	GTCTC	4 cut(s)	13, 246, 441, 1548
BsmBI	CGTCTC	2 cut(s)	13, 246
BsmI	GAATGC	2 cut(s)	439, 1464
BsnI	GGCC	4 cut(s)	5, 359, 1217, 1312
Bso31I	GGTCTC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	1061
Bsp143I	GATC	5 cut(s)	463, 541, 710, 779, 1408
BspACI	CCGC	5 cut(s)	308, 312, 565, 1144, 1355
BspANI	GGCC	4 cut(s)	5, 359, 1217, 1312
BspCNI	CTCAG	7 cut(s)	105, 583, 659, 796, 802, 808, 865
BspFNI	CGCG	2 cut(s)	308, 1179
BspLI	GGNNCC	2 cut(s)	223, 338
BspMI	ACCTGC	1 cut(s)	764
BspPI	GGATC	3 cut(s)	471, 536, 1403
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	1585
BsrI	ACTGG	1 cut(s)	1218
BssECI	CCNNGG	2 cut(s)	232, 1424
BssMI	GATC	5 cut(s)	463, 541, 710, 779, 1408
BssT1I	CCWWGG	1 cut(s)	1424
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	1529
BstC8I	GCNNGC	4 cut(s)	239, 310, 525, 934
BstDEI	CTNAG	8 cut(s)	92, 591, 646, 804, 810, 816, 873, 1405
BstENI	CCTNNNNNAGG	1 cut(s)	1011
BstF5I	GGATG	3 cut(s)	685, 981, 1489
BstFNI	CGCG	2 cut(s)	308, 1179
BstHHI	GCGC	2 cut(s)	529, 1179
BstKTI	GATC	5 cut(s)	466, 544, 713, 782, 1411
BstMAI	GTCTC	4 cut(s)	13, 246, 441, 1548
BstMBI	GATC	5 cut(s)	463, 541, 710, 779, 1408
BstNI	CCWGG	1 cut(s)	361
BstNSI	RCATGY	1 cut(s)	571
BstSCI	CCNGG	3 cut(s)	204, 359, 1226
BstUI	CGCG	2 cut(s)	308, 1179
BstV1I	GCAGC	1 cut(s)	101
BstX2I	RGATCY	2 cut(s)	463, 1408
BstYI	RGATCY	2 cut(s)	463, 1408
BsuI	GTATCC	2 cut(s)	326, 741
BsuRI	GGCC	4 cut(s)	5, 359, 1217, 1312
BtsCI	GGATG	3 cut(s)	685, 981, 1489
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	3 cut(s)	14, 1061, 1211
BveI	ACCTGC	1 cut(s)	764
Cac8I	GCNNGC	4 cut(s)	239, 310, 525, 934
CaiI	CAGNNNCTG	1 cut(s)	803
CfoI	GCGC	2 cut(s)	529, 1179
Cfr13I	GGNCC	1 cut(s)	357
Csp6I	GTAC	2 cut(s)	214, 229
CviAII	CATG	6 cut(s)	438, 460, 568, 755, 1091, 1129
CviQI	GTAC	2 cut(s)	214, 229
DdeI	CTNAG	8 cut(s)	92, 591, 646, 804, 810, 816, 873, 1405
DpnI	GATC	5 cut(s)	465, 543, 712, 781, 1410
DpnII	GATC	5 cut(s)	463, 541, 710, 779, 1408
EaeI	YGGCCR	2 cut(s)	3, 1215
Eco130I	CCWWGG	1 cut(s)	1424
Eco147I	AGGCCT	1 cut(s)	1312
Eco31I	GGTCTC	1 cut(s)	441
Eco32I	GATATC	2 cut(s)	408, 1421
Eco57I	CTGAAG	2 cut(s)	1275, 1398
EcoNI	CCTNNNNNAGG	1 cut(s)	1011
EcoRII	CCWGG	1 cut(s)	359
EcoRV	GATATC	2 cut(s)	408, 1421
EcoT14I	CCWWGG	1 cut(s)	1424
EcoT22I	ATGCAT	2 cut(s)	439, 859
ErhI	CCWWGG	1 cut(s)	1424
Esp3I	CGTCTC	2 cut(s)	13, 246
FaeI	CATG	6 cut(s)	441, 463, 571, 758, 1094, 1132
FatI	CATG	6 cut(s)	437, 459, 567, 754, 1090, 1128
FauI	CCCGC	1 cut(s)	301
FauNDI	CATATG	2 cut(s)	853, 1112
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	3 cut(s)	672, 968, 1496
Fsp4HI	GCNGC	1 cut(s)	115
FspBI	CTAG	3 cut(s)	546, 903, 1191
FspI	TGCGCA	1 cut(s)	528
GlaI	GCGC	2 cut(s)	528, 1178
GluI	GCNGC	1 cut(s)	115
GsuI	CTGGAG	1 cut(s)	1094
HaeIII	GGCC	4 cut(s)	5, 359, 1217, 1312
HapII	CCGG	4 cut(s)	162, 205, 370, 1228
HhaI	GCGC	2 cut(s)	529, 1179
Hin1II	CATG	6 cut(s)	441, 463, 571, 758, 1094, 1132
Hin6I	GCGC	2 cut(s)	527, 1177
HinP1I	GCGC	2 cut(s)	527, 1177
HincII	GTYRAC	1 cut(s)	1360
HindII	GTYRAC	1 cut(s)	1360
HindIII	AAGCTT	1 cut(s)	669
HinfI	GANTC	9 cut(s)	21, 96, 472, 603, 806, 812, 863, 1121, 1334
HpaII	CCGG	4 cut(s)	162, 205, 370, 1228
HphI	GGTGA	1 cut(s)	738
Hpy166II	GTNNAC	2 cut(s)	388, 1360
Hpy188III	TCNNGA	3 cut(s)	1416, 1469, 1492
Hpy8I	GTNNAC	2 cut(s)	388, 1360
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	5 cut(s)	37, 73, 593, 1007, 1422
HpyCH4III	ACNGT	1 cut(s)	1529
HpyCH4IV	ACGT	1 cut(s)	216
HpyF3I	CTNAG	8 cut(s)	92, 591, 646, 804, 810, 816, 873, 1405
HpySE526I	ACGT	1 cut(s)	216
Hsp92II	CATG	6 cut(s)	441, 463, 571, 758, 1094, 1132
HspAI	GCGC	2 cut(s)	527, 1177
Kzo9I	GATC	5 cut(s)	463, 541, 710, 779, 1408
LmnI	GCTCC	3 cut(s)	122, 164, 534
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	5 cut(s)	866, 919, 1462, 1544, 1555
MaeI	CTAG	3 cut(s)	546, 903, 1191
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	8 cut(s)	164, 611, 824, 1131, 1182, 1209, 1303, 1393
MalI	GATC	5 cut(s)	465, 543, 712, 781, 1410
MboI	GATC	5 cut(s)	463, 541, 710, 779, 1408
MboII	GAAGA	4 cut(s)	845, 885, 1352, 1360
MflI	RGATCY	2 cut(s)	463, 1408
MhlI	GDGCHC	1 cut(s)	1061
MlsI	TGGCCA	1 cut(s)	1217
MluNI	TGGCCA	1 cut(s)	1217
MlyI	GAGTC	4 cut(s)	15, 90, 815, 821
MmeI	TCCRAC	3 cut(s)	267, 424, 1135
Mox20I	TGGCCA	1 cut(s)	1217
Mph1103I	ATGCAT	2 cut(s)	439, 859
MscI	TGGCCA	1 cut(s)	1217
MseI	TTAA	3 cut(s)	342, 480, 1268
MslI	CAYNNNNRTG	1 cut(s)	1095
Msp20I	TGGCCA	1 cut(s)	1217
MspI	CCGG	4 cut(s)	162, 205, 370, 1228
MspR9I	CCNGG	3 cut(s)	206, 361, 1228
Mva1269I	GAATGC	2 cut(s)	439, 1464
MvaI	CCWGG	1 cut(s)	361
MvnI	CGCG	2 cut(s)	308, 1179
NciI	CCSGG	2 cut(s)	206, 1228
NdeI	CATATG	2 cut(s)	853, 1112
NdeII	GATC	5 cut(s)	463, 541, 710, 779, 1408
NlaIII	CATG	6 cut(s)	441, 463, 571, 758, 1094, 1132
NlaIV	GGNNCC	2 cut(s)	223, 338
NmuCI	GTSAC	4 cut(s)	164, 611, 824, 1209
NsbI	TGCGCA	1 cut(s)	528
NsiI	ATGCAT	2 cut(s)	439, 859
NspI	RCATGY	1 cut(s)	571
PceI	AGGCCT	1 cut(s)	1312
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	2 cut(s)	439, 1464
PfeI	GAWTC	5 cut(s)	472, 603, 863, 1121, 1334
PflFI	GACNNNGTC	1 cut(s)	1207
PfoI	TCCNGGA	1 cut(s)	1226
PkrI	GCNGC	1 cut(s)	116
PleI	GAGTC	4 cut(s)	15, 90, 814, 820
PpsI	GAGTC	4 cut(s)	15, 90, 814, 820
Psp6I	CCWGG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	223, 338
PspPI	GGNCC	1 cut(s)	357
PstNI	CAGNNNCTG	1 cut(s)	803
PsuI	RGATCY	2 cut(s)	463, 1408
PsyI	GACNNNGTC	1 cut(s)	1207
RsaI	GTAC	2 cut(s)	215, 230
RsaNI	GTAC	2 cut(s)	214, 229
RseI	CAYNNNNRTG	1 cut(s)	1095
SaqAI	TTAA	3 cut(s)	342, 480, 1268
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	5 cut(s)	463, 541, 710, 779, 1408
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	4 cut(s)	15, 90, 815, 821
ScrFI	CCNGG	3 cut(s)	206, 361, 1228
SduI	GDGCHC	1 cut(s)	1061
SfaNI	GCATC	5 cut(s)	866, 919, 1462, 1544, 1555
SmiMI	CAYNNNNRTG	1 cut(s)	1095
SmlI	CTYRAG	1 cut(s)	1389
SmoI	CTYRAG	1 cut(s)	1389
SseBI	AGGCCT	1 cut(s)	1312
SsiI	CCGC	5 cut(s)	308, 312, 565, 1144, 1355
SspI	AATATT	1 cut(s)	839
SspMI	CTAG	3 cut(s)	546, 903, 1191
StuI	AGGCCT	1 cut(s)	1312
StyD4I	CCNGG	3 cut(s)	204, 359, 1226
StyI	CCWWGG	1 cut(s)	1424
TaaI	ACNGT	1 cut(s)	1529
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	675, 725, 927
TaqII	GACCGA	1 cut(s)	967
TfiI	GAWTC	5 cut(s)	472, 603, 863, 1121, 1334
Tru1I	TTAA	3 cut(s)	342, 480, 1268
Tru9I	TTAA	3 cut(s)	342, 480, 1268
TscAI	CASTG	3 cut(s)	21, 1061, 1218
TseFI	GTSAC	4 cut(s)	164, 611, 824, 1209
TseI	GCWGC	1 cut(s)	114
Tsp45I	GTSAC	4 cut(s)	164, 611, 824, 1209
TspGWI	ACGGA	3 cut(s)	169, 308, 974
TspRI	CASTG	3 cut(s)	21, 1061, 1218
Tth111I	GACNNNGTC	1 cut(s)	1207
XagI	CCTNNNNNAGG	1 cut(s)	1011
XapI	RAATTY	4 cut(s)	259, 868, 888, 1444
XceI	RCATGY	1 cut(s)	571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	435
XspI	CTAG	3 cut(s)	546, 903, 1191
Zsp2I	ATGCAT	2 cut(s)	439, 859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.