AT2G30370

Epidermal patterning factor proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010795
Physical Location & Seq
Reverse (-)
12940349 .. 12942829
2481 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30370.1

Sequence Viewer

Length: 693 bp
ATGGGTTTCGAGAGAACATCATCATCATTATCATTATTATCATCATCATTACCATCATCATTACAACCATCAGAAAACACGAGAGCCAAGTTCAGTCTCTTCTATTTATTGCTACTCTTCTTCGTCCTCTGTGTCATTGCCACCTTCACTATAACTCCCACTTCGACTTCTTCTCCATATAATAGGAATTCTAACTCTGGGACACTAGGGAACTTCTATGCAAAGGTTCGTAAACTGTTTATACCTCTTACTCTCTTGCGTGATCTAACAATCAGCGACTGTGACGGCATGTCGAGACTGACTGGGCATGCAGAGATGCCATGTACTCCTAAAGAAATTCTCAGCCGTCGGATTGGTTTCAGCGCACACGAGGACAAGGACAGTACTCAACTTTTGGTTCGTTCACCACTCGTGGGACCCTGCCTTGCTTACGATCTCGATCGAGTGGAGGAAGGCAAGAGTACCGTAGTGATAAAGAAGACTAGGAAGATCGGTGACCGGAGCAAGGAGGCAGAGCTACGGAGGATTCTAAGGGGATTGGGCTCATCTCCACCACGGTGCTCCTCCAAGTGTGGAAGATGCACTCCGTGCAAGCCTGTTCACGTTCCGGTGCCTCCCGGCACGCCTGTCACCGCCGAATACTACCCGGAAGCTTGGAGATGCAAGTGCGGCAACAAGTTGTACATGCCATGA

Protein Analysis

230

Amino Acids

25.44

Weight (kDa)

9.45

Isoelectric Point (pI)

63.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 180 - 230 9.4e-21 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010795)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30370 AT2G30370 AT2G30370
fragaria_vesca FvH4_3g40280 FvH4_3g40280 FvH4_6g29861
malus_domestica MD11G1055500.v1.1
prunus_persica Prupe.6G043000_v2.0.a1
pyrus_communis pycom03g04280 pycom11g04530
rosa_chinensis RchiOBHm_Chr5g0072621
rosa_laevigata RLG00000036317
rosa_multiflora Rmu_sc0007873.1_g000018
rosa_roxburghii Rroxscaffold_1G00008570 Rroxscaffold_2G00108910
rosa_rugosa Rorug02G0326300 Rorug05G0418900
rosa_samantha Rh5AG475700 Rh5DG508300
rosa_wichuraiana Rw5G044170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 610
AciI CCGC 2 cut(s) 633, 669
AcsI RAATTY 2 cut(s) 187, 336
AdeI CACNNNGTG 1 cut(s) 588
AfaI GTAC 4 cut(s) 325, 385, 463, 683
AfiI CCNNNNNNNGG 2 cut(s) 413, 505
AhdI GACNNNNNGTC 1 cut(s) 289
AleI CACNNNNGTG 1 cut(s) 556
AluBI AGCT 2 cut(s) 517, 653
AluI AGCT 2 cut(s) 517, 653
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 2 cut(s) 101, 289
AlwNI CAGNNNCTG 1 cut(s) 279
ApoI RAATTY 2 cut(s) 187, 336
AspLEI GCGC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 416
AsuC2I CCSGG 2 cut(s) 618, 647
AsuHPI GGTGA 3 cut(s) 396, 506, 622
AvaII GGWCC 1 cut(s) 416
BanI GGYRCC 1 cut(s) 610
BanII GRGCYC 1 cut(s) 545
BauI CACGAG 3 cut(s) 79, 368, 410
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 1 cut(s) 563
BccI CCATC 2 cut(s) 61, 76
BceAI ACGGC 2 cut(s) 301, 330
BcnI CCSGG 2 cut(s) 618, 647
BcoDI GTCTC 2 cut(s) 101, 289
BfaI CTAG 2 cut(s) 206, 483
BisI GCNGC 1 cut(s) 670
BlsI GCNGC 1 cut(s) 671
BmcAI AGTACT 1 cut(s) 385
Bme1390I CCNGG 2 cut(s) 618, 647
Bme18I GGWCC 1 cut(s) 416
BmeRI GACNNNNNGTC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 3 cut(s) 417, 418, 612
BmrFI CCNGG 2 cut(s) 618, 647
BmrI ACTGGG 1 cut(s) 312
BmsI GCATC 3 cut(s) 306, 569, 650
BmuI ACTGGG 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 485
BpuMI CCSGG 2 cut(s) 618, 647
BsaBI GATNNNNATC 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 554
BsaWI WCCGGW 2 cut(s) 498, 607
BsaXI ACNNNNNCTCC 4 cut(s) 139, 157, 169, 187
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 505
Bse1I ACTGG 1 cut(s) 307
Bse3DI GCAATG 1 cut(s) 135
Bse8I GATNNNNATC 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 554
BseJI GATNNNNATC 1 cut(s) 438
BseLI CCNNNNNNNGG 2 cut(s) 413, 505
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 355
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 553
Bsh1285I CGRYCG 1 cut(s) 442
BshNI GGYRCC 1 cut(s) 610
BsiEI CGRYCG 1 cut(s) 442
BsiHKAI GWGCWC 1 cut(s) 563
BsiSI CCGG 4 cut(s) 499, 608, 618, 647
BslFI GGGAC 2 cut(s) 214, 429
BslI CCNNNNNNNGG 2 cut(s) 413, 505
BsmAI GTCTC 2 cut(s) 101, 289
BsmFI GGGAC 2 cut(s) 214, 429
Bsp1286I GDGCHC 2 cut(s) 545, 563
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 4 cut(s) 262, 433, 439, 489
BspACI CCGC 2 cut(s) 633, 669
BspCNI CTCAG 1 cut(s) 354
BspLI GGNNCC 3 cut(s) 417, 418, 612
BspT107I GGYRCC 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 135
BsrGI TGTACA 1 cut(s) 681
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 554
BssMI GATC 4 cut(s) 262, 433, 439, 489
BssSI CACGAG 3 cut(s) 79, 368, 410
Bst2BI CACGAG 3 cut(s) 79, 368, 410
Bst4CI ACNGT 5 cut(s) 237, 281, 383, 466, 558
Bst6I CTCTTC 2 cut(s) 104, 122
BstAPI GCANNNNNTGC 1 cut(s) 588
BstAUI TGTACA 1 cut(s) 681
BstC8I GCNNGC 3 cut(s) 309, 593, 623
BstDEI CTNAG 2 cut(s) 341, 530
BstDSI CCRYGG 1 cut(s) 554
BstEII GGTNACC 1 cut(s) 494
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 4 cut(s) 265, 436, 442, 492
BstMAI GTCTC 2 cut(s) 101, 289
BstMBI GATC 4 cut(s) 262, 433, 439, 489
BstMCI CGRYCG 1 cut(s) 442
BstMWI GCNNNNNNNGC 2 cut(s) 588, 669
BstNSI RCATGY 3 cut(s) 292, 311, 688
BstPI GGTNACC 1 cut(s) 494
BstSCI CCNGG 2 cut(s) 616, 645
BstV2I GAAGAC 1 cut(s) 485
BtgI CCRYGG 1 cut(s) 554
Cac8I GCNNGC 3 cut(s) 309, 593, 623
CaiI CAGNNNCTG 1 cut(s) 279
CfoI GCGC 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 416
Csp6I GTAC 4 cut(s) 324, 384, 462, 682
CviAII CATG 5 cut(s) 289, 308, 321, 685, 690
CviJI RGCY 6 cut(s) 86, 345, 517, 543, 595, 653
CviKI_1 RGCY 6 cut(s) 86, 345, 517, 543, 595, 653
CviQI GTAC 4 cut(s) 324, 384, 462, 682
DdeI CTNAG 2 cut(s) 341, 530
DpnI GATC 4 cut(s) 264, 435, 441, 491
DpnII GATC 4 cut(s) 262, 433, 439, 489
DraIII CACNNNGTG 1 cut(s) 588
DriI GACNNNNNGTC 1 cut(s) 289
Eam1104I CTCTTC 2 cut(s) 104, 122
Eam1105I GACNNNNNGTC 1 cut(s) 289
EarI CTCTTC 2 cut(s) 104, 122
Eco24I GRGCYC 1 cut(s) 545
Eco47I GGWCC 1 cut(s) 416
Eco91I GGTNACC 1 cut(s) 494
EcoO109I RGGNCCY 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 494
EcoRI GAATTC 1 cut(s) 187
EcoT38I GRGCYC 1 cut(s) 545
FaeI CATG 5 cut(s) 292, 311, 324, 688, 693
FaqI GGGAC 2 cut(s) 214, 429
FatI CATG 5 cut(s) 288, 307, 320, 684, 689
Fnu4HI GCNGC 1 cut(s) 670
FriOI GRGCYC 1 cut(s) 545
Fsp4HI GCNGC 1 cut(s) 670
FspBI CTAG 2 cut(s) 206, 483
GlaI GCGC 1 cut(s) 364
GluI GCNGC 1 cut(s) 670
HapII CCGG 4 cut(s) 499, 608, 618, 647
HhaI GCGC 1 cut(s) 365
Hin1II CATG 5 cut(s) 292, 311, 324, 688, 693
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HindIII AAGCTT 1 cut(s) 651
HinfI GANTC 1 cut(s) 526
HpaII CCGG 4 cut(s) 499, 608, 618, 647
HphI GGTGA 3 cut(s) 396, 506, 622
Hpy166II GTNNAC 3 cut(s) 233, 404, 601
Hpy188I TCNGA 2 cut(s) 73, 351
Hpy188III TCNNGA 3 cut(s) 10, 294, 437
Hpy8I GTNNAC 3 cut(s) 233, 404, 601
Hpy99I CGWCG 1 cut(s) 351
HpyAV CCTTC 2 cut(s) 154, 446
HpyCH4III ACNGT 5 cut(s) 237, 281, 383, 466, 558
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 5 cut(s) 221, 311, 582, 591, 663
HpyF10VI GCNNNNNNNGC 2 cut(s) 588, 669
HpyF3I CTNAG 2 cut(s) 341, 530
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 5 cut(s) 292, 311, 324, 688, 693
HspAI GCGC 1 cut(s) 363
KflI GGGWCCC 1 cut(s) 416
Kzo9I GATC 4 cut(s) 262, 433, 439, 489
LmnI GCTCC 2 cut(s) 501, 566
LpnPI CCDG 9 cut(s) 183, 288, 433, 512, 609, 621, 631, 639, 660
LweI GCATC 3 cut(s) 306, 569, 650
MaeI CTAG 2 cut(s) 206, 483
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 3 cut(s) 281, 494, 628
MalI GATC 4 cut(s) 264, 435, 441, 491
MboI GATC 4 cut(s) 262, 433, 439, 489
MboII GAAGA 7 cut(s) 91, 109, 112, 162, 490, 499, 588
MhlI GDGCHC 2 cut(s) 545, 563
MluCI AATT 2 cut(s) 187, 336
MmeI TCCRAC 1 cut(s) 329
MnlI CCTC 8 cut(s) 137, 255, 364, 442, 502, 516, 574, 624
MslI CAYNNNNRTG 1 cut(s) 556
MspI CCGG 4 cut(s) 499, 608, 618, 647
MspR9I CCNGG 2 cut(s) 618, 647
MwoI GCNNNNNNNGC 2 cut(s) 588, 669
NciI CCSGG 2 cut(s) 618, 647
NdeII GATC 4 cut(s) 262, 433, 439, 489
NlaIII CATG 5 cut(s) 292, 311, 324, 688, 693
NlaIV GGNNCC 3 cut(s) 417, 418, 612
NmuCI GTSAC 3 cut(s) 281, 494, 628
NspI RCATGY 3 cut(s) 292, 311, 688
OliI CACNNNNGTG 1 cut(s) 556
PaeI GCATGC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 526
PkrI GCNGC 1 cut(s) 671
Ple19I CGATCG 1 cut(s) 442
PpuMI RGGWCCY 1 cut(s) 416
Psp5II RGGWCCY 1 cut(s) 416
PspEI GGTNACC 1 cut(s) 494
PspN4I GGNNCC 3 cut(s) 417, 418, 612
PspPI GGNCC 1 cut(s) 416
PspPPI RGGWCCY 1 cut(s) 416
PstNI CAGNNNCTG 1 cut(s) 279
PvuI CGATCG 1 cut(s) 442
RsaI GTAC 4 cut(s) 325, 385, 463, 683
RsaNI GTAC 4 cut(s) 324, 384, 462, 682
RseI CAYNNNNRTG 1 cut(s) 556
SatI GCNGC 1 cut(s) 670
Sau3AI GATC 4 cut(s) 262, 433, 439, 489
Sau96I GGNCC 1 cut(s) 416
ScaI AGTACT 1 cut(s) 385
ScrFI CCNGG 2 cut(s) 618, 647
SduI GDGCHC 2 cut(s) 545, 563
SetI ASST 6 cut(s) 146, 228, 247, 519, 606, 655
SfaNI GCATC 3 cut(s) 306, 569, 650
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 556
SphI GCATGC 1 cut(s) 311
Sse9I AATT 2 cut(s) 187, 336
SsiI CCGC 2 cut(s) 633, 669
SspMI CTAG 2 cut(s) 206, 483
StyD4I CCNGG 2 cut(s) 616, 645
TaaI ACNGT 5 cut(s) 237, 281, 383, 466, 558
TaiI ACGT 1 cut(s) 606
TaqI TCGA 5 cut(s) 9, 164, 293, 438, 442
TasI AATT 2 cut(s) 187, 336
TatI WGTACW 3 cut(s) 323, 383, 681
TauI GCSGC 1 cut(s) 672
TfiI GAWTC 1 cut(s) 526
TseFI GTSAC 3 cut(s) 281, 494, 628
Tsp45I GTSAC 3 cut(s) 281, 494, 628
TspGWI ACGGA 2 cut(s) 535, 576
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 2 cut(s) 187, 336
XceI RCATGY 3 cut(s) 292, 311, 688
XspI CTAG 2 cut(s) 206, 483
ZrmI AGTACT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.