Rroxscaffold_1G00008570

EPIDERMAL PATTERNING FACTOR-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010795
Physical Location & Seq
Forward (+)
10839429 .. 10840682
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00008570.1

Sequence Viewer

Length: 396 bp
ATGGAGTGGAAGAGACAGAGAGTATTAAGCAGCTGGTTTATCAACAAGCTCACCTCCCTTTTCTTCTTGCTCTCAATCTCTGCACTGCTATTCACCATCATCACCTCTACATCTACATGTTCTCTAGATTGTAGCTTTCCCTTAAGTACCGCTAAAGCTGACACAAATTTTCAGGAGGAGCAGAGGGGGAAGAAGGCGATGGTGATGCCTTTGAGCTTGGCGAGGAGGTATTTGAGCGGGCCCGGATCGTCGCCGCCTCGCTGCACGTCCAAGTGCGGCAGGTGCACGCCGTGCAAGCCGGTTCACGTGCCCGTGCCGCCCGGAACTCCGGTGACAGCCGAGTACTACCCAGAAGCGTGGAGGTGCAAGTGTGGGAACAAGTTGTACATGCCATGA

Protein Analysis

131

Amino Acids

14.64

Weight (kDa)

9.47

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 81 - 131 1.2e-20 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010795)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30370 AT2G30370 AT2G30370
fragaria_vesca FvH4_3g40280 FvH4_3g40280 FvH4_6g29861
malus_domestica MD11G1055500.v1.1
prunus_persica Prupe.6G043000_v2.0.a1
pyrus_communis pycom03g04280 pycom11g04530
rosa_chinensis RchiOBHm_Chr5g0072621
rosa_laevigata RLG00000036317
rosa_multiflora Rmu_sc0007873.1_g000018
rosa_roxburghii Rroxscaffold_1G00008570 Rroxscaffold_2G00108910
rosa_rugosa Rorug02G0326300 Rorug05G0418900
rosa_samantha Rh5AG475700 Rh5DG508300
rosa_wichuraiana Rw5G044170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 270
Acc36I ACCTGC 1 cut(s) 270
AccBSI CCGCTC 1 cut(s) 237
AciI CCGC 5 cut(s) 150, 237, 254, 276, 317
AclWI GGATC 1 cut(s) 253
AcsI RAATTY 1 cut(s) 166
AcvI CACGTG 1 cut(s) 307
AdeI CACNNNGTG 1 cut(s) 291
AfaI GTAC 3 cut(s) 148, 344, 386
AflII CTTAAG 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 116
AjiI CACGTC 1 cut(s) 267
AluBI AGCT 5 cut(s) 33, 49, 135, 158, 216
AluI AGCT 5 cut(s) 33, 49, 135, 158, 216
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 7
Alw44I GTGCAC 1 cut(s) 283
AlwI GGATC 1 cut(s) 253
AoxI GGCC 1 cut(s) 239
ApaI GGGCCC 1 cut(s) 243
ApaLI GTGCAC 1 cut(s) 283
ApeKI GCWGC 2 cut(s) 30, 261
ApoI RAATTY 1 cut(s) 166
AspS9I GGNCC 2 cut(s) 239, 240
AsuC2I CCSGG 2 cut(s) 243, 321
AsuHPI GGTGA 5 cut(s) 43, 85, 94, 214, 343
BaeGI GKGCMC 3 cut(s) 243, 287, 312
BanII GRGCYC 1 cut(s) 243
BbrPI CACGTG 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 2 cut(s) 42, 248
BccI CCATC 2 cut(s) 104, 193
BceAI ACGGC 1 cut(s) 274
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BcnI CCSGG 2 cut(s) 243, 321
BcoDI GTCTC 1 cut(s) 7
BfaI CTAG 1 cut(s) 125
BfrI CTTAAG 1 cut(s) 142
BfuAI ACCTGC 1 cut(s) 270
BisI GCNGC 5 cut(s) 31, 254, 262, 277, 317
BlsI GCNGC 5 cut(s) 32, 255, 263, 278, 318
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 2 cut(s) 243, 321
BmgBI CACGTC 1 cut(s) 267
BmgT120I GGNCC 2 cut(s) 239, 240
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 2 cut(s) 243, 321
BmsI GCATC 1 cut(s) 195
BpuMI CCSGG 2 cut(s) 243, 321
BsaAI YACGTR 1 cut(s) 307
BsaWI WCCGGW 1 cut(s) 328
Bse118I RCCGGY 1 cut(s) 298
BseRI GAGGAG 2 cut(s) 191, 238
BseSI GKGCMC 3 cut(s) 243, 287, 312
BseXI GCAGC 2 cut(s) 42, 248
BsgI GTGCAG 2 cut(s) 66, 247
BshFI GGCC 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 4 cut(s) 243, 299, 321, 329
BsmAI GTCTC 1 cut(s) 7
BsnI GGCC 1 cut(s) 241
Bsp120I GGGCCC 1 cut(s) 239
Bsp1286I GDGCHC 3 cut(s) 243, 287, 312
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 1 cut(s) 245
BspACI CCGC 5 cut(s) 150, 237, 254, 276, 317
BspANI GGCC 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 270
BspPI GGATC 1 cut(s) 253
BspTI CTTAAG 1 cut(s) 142
BsrBI CCGCTC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 298
BsrGI TGTACA 1 cut(s) 384
BssAI RCCGGY 1 cut(s) 298
BssMI GATC 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 142
BstAPI GCANNNNNTGC 1 cut(s) 291
BstAUI TGTACA 1 cut(s) 384
BstBAI YACGTR 1 cut(s) 307
BstC8I GCNNGC 3 cut(s) 239, 287, 296
BstKTI GATC 1 cut(s) 248
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 1 cut(s) 245
BstMWI GCNNNNNNNGC 4 cut(s) 282, 291, 295, 316
BstNSI RCATGY 2 cut(s) 120, 391
BstSCI CCNGG 2 cut(s) 241, 319
BstSLI GKGCMC 3 cut(s) 243, 287, 312
BstV1I GCAGC 2 cut(s) 42, 248
BstXI CCANNNNNNTGG 1 cut(s) 357
BsuRI GGCC 1 cut(s) 241
BtgZI GCGATG 1 cut(s) 212
BtrI CACGTC 1 cut(s) 267
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 83
BveI ACCTGC 1 cut(s) 270
Cac8I GCNNGC 3 cut(s) 239, 287, 296
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 239, 240
Csp6I GTAC 3 cut(s) 147, 343, 385
CviAII CATG 3 cut(s) 117, 388, 393
CviJI RGCY 8 cut(s) 33, 49, 135, 158, 216, 241, 298, 338
CviKI_1 RGCY 8 cut(s) 33, 49, 135, 158, 216, 241, 298, 338
CviQI GTAC 3 cut(s) 147, 343, 385
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
DraIII CACNNNGTG 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco24I GRGCYC 1 cut(s) 243
Eco72I CACGTG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 243
FaeI CATG 3 cut(s) 120, 391, 396
FaiI YATR 3 cut(s) 118, 389, 394
FatI CATG 3 cut(s) 116, 387, 392
FauI CCCGC 1 cut(s) 230
Fnu4HI GCNGC 5 cut(s) 31, 254, 262, 277, 317
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 5 cut(s) 31, 254, 262, 277, 317
FspBI CTAG 1 cut(s) 125
GluI GCNGC 5 cut(s) 31, 254, 262, 277, 317
HaeIII GGCC 1 cut(s) 241
HapII CCGG 4 cut(s) 243, 299, 321, 329
Hin1II CATG 3 cut(s) 120, 391, 396
HpaII CCGG 4 cut(s) 243, 299, 321, 329
HphI GGTGA 5 cut(s) 43, 85, 94, 214, 343
Hpy166II GTNNAC 2 cut(s) 285, 304
Hpy188III TCNNGA 2 cut(s) 125, 173
Hpy8I GTNNAC 2 cut(s) 285, 304
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 187
HpyCH4IV ACGT 2 cut(s) 266, 306
HpyCH4V TGCA 5 cut(s) 83, 264, 285, 294, 366
HpyF10VI GCNNNNNNNGC 4 cut(s) 282, 291, 295, 316
HpySE526I ACGT 2 cut(s) 266, 306
Hsp92II CATG 3 cut(s) 120, 391, 396
Kzo9I GATC 1 cut(s) 245
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 8 cut(s) 19, 158, 256, 265, 312, 334, 342, 363
Lsp1109I GCAGC 2 cut(s) 42, 248
LweI GCATC 1 cut(s) 195
MaeI CTAG 1 cut(s) 125
MaeII ACGT 2 cut(s) 266, 306
MaeIII GTNAC 1 cut(s) 331
MalI GATC 1 cut(s) 247
MbiI CCGCTC 1 cut(s) 237
MboI GATC 1 cut(s) 245
MboII GAAGA 3 cut(s) 22, 55, 202
MhlI GDGCHC 3 cut(s) 243, 287, 312
MluCI AATT 1 cut(s) 166
MnlI CCTC 8 cut(s) 64, 115, 169, 177, 216, 219, 267, 354
MseI TTAA 2 cut(s) 26, 143
MslI CAYNNNNRTG 1 cut(s) 115
MspA1I CMGCKG 1 cut(s) 33
MspCI CTTAAG 1 cut(s) 142
MspI CCGG 4 cut(s) 243, 299, 321, 329
MspR9I CCNGG 2 cut(s) 243, 321
MwoI GCNNNNNNNGC 4 cut(s) 282, 291, 295, 316
NciI CCSGG 2 cut(s) 243, 321
NdeII GATC 1 cut(s) 245
NlaIII CATG 3 cut(s) 120, 391, 396
NlaIV GGNNCC 1 cut(s) 241
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 2 cut(s) 120, 391
PaqCI CACCTGC 1 cut(s) 270
PciI ACATGT 1 cut(s) 116
PkrI GCNGC 5 cut(s) 32, 255, 263, 278, 318
PmaCI CACGTG 1 cut(s) 307
PmlI CACGTG 1 cut(s) 307
Ppu21I YACGTR 1 cut(s) 307
PscI ACATGT 1 cut(s) 116
PspCI CACGTG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 241
PspOMI GGGCCC 1 cut(s) 239
PspPI GGNCC 2 cut(s) 239, 240
PsrI GAACNNNNNNTAC 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 3 cut(s) 148, 344, 386
RsaNI GTAC 3 cut(s) 147, 343, 385
RseI CAYNNNNRTG 1 cut(s) 115
SaqAI TTAA 2 cut(s) 26, 143
SatI GCNGC 5 cut(s) 31, 254, 262, 277, 317
Sau3AI GATC 1 cut(s) 245
Sau96I GGNCC 2 cut(s) 239, 240
ScaI AGTACT 1 cut(s) 344
ScrFI CCNGG 2 cut(s) 243, 321
SduI GDGCHC 3 cut(s) 243, 287, 312
SfaNI GCATC 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 1 cut(s) 166
SsiI CCGC 5 cut(s) 150, 237, 254, 276, 317
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 241, 319
TaiI ACGT 2 cut(s) 269, 309
TasI AATT 1 cut(s) 166
TatI WGTACW 2 cut(s) 342, 384
TauI GCSGC 3 cut(s) 256, 279, 319
Tru1I TTAA 2 cut(s) 26, 143
Tru9I TTAA 2 cut(s) 26, 143
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 2 cut(s) 30, 261
Tsp45I GTSAC 1 cut(s) 331
TspRI CASTG 1 cut(s) 90
Vha464I CTTAAG 1 cut(s) 142
VneI GTGCAC 1 cut(s) 283
XapI RAATTY 1 cut(s) 166
XbaI TCTAGA 1 cut(s) 124
XceI RCATGY 2 cut(s) 120, 391
XspI CTAG 1 cut(s) 125
ZrmI AGTACT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.