Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007873.1

Orthogroup ID

OG0010795

Physical Location & Seq

Genomic Coordinates Reverse (-)

71287 .. 72518

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007873.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atggagtggaagagacagagagtattaagcagctggtttatcaacaagctcacctcccttttcttcttgctctcaatctctgcactgctattcaccatcatcacctctacatctacatgtcctctagattgtagctttcccttaagtaccgctaaagctgacacaaattttcaggaggagcagaggggggagaaggcgatggtgctgccttcgagcttggcgaggaggtacttgagcgggcccggatcgtccccgcctcgctgcacgtccaagtgcggcaggtgcacgccgtgcaagccggttcacgtgcctgtgccgcccggaactccggtgacagccgagtactacccggaagcgtggaggtgcaagtgtgggaacaagttgtacatgccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048731 GO:0048856 GO:0048869 GO:0090558 GO:0090626 GO:0090627 GO:0090698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPF

Protein Analysis

131

Amino Acids

14.61

Weight (kDa)

9.26

Isoelectric Point (pI)

54.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30370 AT2G30370 AT2G30370
fragaria_vesca	FvH4_3g40280 FvH4_3g40280 FvH4_6g29861
malus_domestica	MD11G1055500.v1.1
prunus_persica	Prupe.6G043000_v2.0.a1
pyrus_communis	pycom03g04280 pycom11g04530
rosa_chinensis	RchiOBHm_Chr5g0072621
rosa_laevigata	RLG00000036317
rosa_multiflora	Rmu_sc0007873.1_g000018
rosa_roxburghii	Rroxscaffold_1G00008570 Rroxscaffold_2G00108910
rosa_rugosa	Rorug02G0326300 Rorug05G0418900
rosa_samantha	Rh5AG475700 Rh5DG508300
rosa_wichuraiana	Rw5G044170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	270
AccBSI	CCGCTC	1 cut(s)	237
AciI	CCGC	5 cut(s)	150, 237, 254, 276, 317
AclWI	GGATC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	166
AcvI	CACGTG	1 cut(s)	307
AdeI	CACNNNGTG	1 cut(s)	291
AfaI	GTAC	4 cut(s)	148, 230, 344, 386
AflII	CTTAAG	1 cut(s)	142
AflIII	ACRYGT	1 cut(s)	116
AjiI	CACGTC	1 cut(s)	267
AluBI	AGCT	5 cut(s)	33, 49, 135, 158, 216
AluI	AGCT	5 cut(s)	33, 49, 135, 158, 216
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	1 cut(s)	7
Alw44I	GTGCAC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	1 cut(s)	239
ApaI	GGGCCC	1 cut(s)	243
ApaLI	GTGCAC	1 cut(s)	283
ApeKI	GCWGC	3 cut(s)	30, 205, 261
ApoI	RAATTY	1 cut(s)	166
AspS9I	GGNCC	2 cut(s)	239, 240
AsuC2I	CCSGG	3 cut(s)	243, 321, 350
AsuHPI	GGTGA	4 cut(s)	43, 85, 94, 343
BaeGI	GKGCMC	2 cut(s)	243, 287
BanII	GRGCYC	1 cut(s)	243
BbrPI	CACGTG	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	3 cut(s)	42, 192, 248
BccI	CCATC	2 cut(s)	104, 193
BceAI	ACGGC	1 cut(s)	274
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BcnI	CCSGG	3 cut(s)	243, 321, 350
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	1 cut(s)	125
BfrI	CTTAAG	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	270
BisI	GCNGC	5 cut(s)	31, 206, 262, 277, 317
BlsI	GCNGC	5 cut(s)	32, 207, 263, 278, 318
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	3 cut(s)	243, 321, 350
BmgBI	CACGTC	1 cut(s)	267
BmgT120I	GGNCC	2 cut(s)	239, 240
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	3 cut(s)	243, 321, 350
BpuEI	CTTGAG	1 cut(s)	253
BpuMI	CCSGG	3 cut(s)	243, 321, 350
BsaAI	YACGTR	1 cut(s)	307
BsaWI	WCCGGW	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	298
BseRI	GAGGAG	2 cut(s)	191, 238
BseSI	GKGCMC	2 cut(s)	243, 287
BseXI	GCAGC	3 cut(s)	42, 192, 248
BsgI	GTGCAG	2 cut(s)	66, 247
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	287
BsiSI	CCGG	5 cut(s)	243, 299, 321, 329, 350
BslFI	GGGAC	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	1 cut(s)	241
Bsp120I	GGGCCC	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	243, 287
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	245
BspACI	CCGC	5 cut(s)	150, 237, 254, 276, 317
BspANI	GGCC	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	253
BspTI	CTTAAG	1 cut(s)	142
BsrBI	CCGCTC	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	298
BsrGI	TGTACA	1 cut(s)	384
BssAI	RCCGGY	1 cut(s)	298
BssMI	GATC	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	142
BstAPI	GCANNNNNTGC	1 cut(s)	291
BstAUI	TGTACA	1 cut(s)	384
BstBAI	YACGTR	1 cut(s)	307
BstC8I	GCNNGC	3 cut(s)	239, 287, 296
BstKTI	GATC	1 cut(s)	248
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	4 cut(s)	282, 291, 295, 316
BstNSI	RCATGY	2 cut(s)	120, 391
BstSCI	CCNGG	3 cut(s)	241, 319, 348
BstSLI	GKGCMC	2 cut(s)	243, 287
BstV1I	GCAGC	3 cut(s)	42, 192, 248
BsuRI	GGCC	1 cut(s)	241
BtgZI	GCGATG	1 cut(s)	212
BtrI	CACGTC	1 cut(s)	267
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	83
BveI	ACCTGC	1 cut(s)	270
Cac8I	GCNNGC	3 cut(s)	239, 287, 296
Cfr10I	RCCGGY	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	239, 240
Csp6I	GTAC	4 cut(s)	147, 229, 343, 385
CviAII	CATG	3 cut(s)	117, 388, 393
CviJI	RGCY	8 cut(s)	33, 49, 135, 158, 216, 241, 298, 338
CviKI_1	RGCY	8 cut(s)	33, 49, 135, 158, 216, 241, 298, 338
CviQI	GTAC	4 cut(s)	147, 229, 343, 385
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
DraIII	CACNNNGTG	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	243
Eco72I	CACGTG	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	243
FaeI	CATG	3 cut(s)	120, 391, 396
FaiI	YATR	3 cut(s)	118, 389, 394
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	3 cut(s)	116, 387, 392
FauI	CCCGC	2 cut(s)	230, 261
Fnu4HI	GCNGC	5 cut(s)	31, 206, 262, 277, 317
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	5 cut(s)	31, 206, 262, 277, 317
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	5 cut(s)	31, 206, 262, 277, 317
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	5 cut(s)	243, 299, 321, 329, 350
Hin1II	CATG	3 cut(s)	120, 391, 396
HpaII	CCGG	5 cut(s)	243, 299, 321, 329, 350
HphI	GGTGA	4 cut(s)	43, 85, 94, 343
Hpy166II	GTNNAC	2 cut(s)	285, 304
Hpy188III	TCNNGA	2 cut(s)	125, 173
Hpy8I	GTNNAC	2 cut(s)	285, 304
HpyAV	CCTTC	2 cut(s)	187, 219
HpyCH4IV	ACGT	2 cut(s)	266, 306
HpyCH4V	TGCA	5 cut(s)	83, 264, 285, 294, 366
HpyF10VI	GCNNNNNNNGC	4 cut(s)	282, 291, 295, 316
HpySE526I	ACGT	2 cut(s)	266, 306
Hsp92II	CATG	3 cut(s)	120, 391, 396
Kzo9I	GATC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	9 cut(s)	19, 158, 256, 265, 312, 324, 334, 342, 363
Lsp1109I	GCAGC	3 cut(s)	42, 192, 248
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	2 cut(s)	266, 306
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	1 cut(s)	247
MbiI	CCGCTC	1 cut(s)	237
MboI	GATC	1 cut(s)	245
MboII	GAAGA	2 cut(s)	22, 55
MhlI	GDGCHC	2 cut(s)	243, 287
MluCI	AATT	1 cut(s)	166
MnlI	CCTC	9 cut(s)	64, 115, 132, 169, 177, 216, 219, 267, 354
MseI	TTAA	2 cut(s)	26, 143
MslI	CAYNNNNRTG	1 cut(s)	115
MspA1I	CMGCKG	1 cut(s)	33
MspCI	CTTAAG	1 cut(s)	142
MspI	CCGG	5 cut(s)	243, 299, 321, 329, 350
MspR9I	CCNGG	3 cut(s)	243, 321, 350
MwoI	GCNNNNNNNGC	4 cut(s)	282, 291, 295, 316
NciI	CCSGG	3 cut(s)	243, 321, 350
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	3 cut(s)	120, 391, 396
NlaIV	GGNNCC	1 cut(s)	241
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	331
NspI	RCATGY	2 cut(s)	120, 391
PaqCI	CACCTGC	1 cut(s)	270
PciI	ACATGT	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PkrI	GCNGC	5 cut(s)	32, 207, 263, 278, 318
PmaCI	CACGTG	1 cut(s)	307
PmlI	CACGTG	1 cut(s)	307
Ppu21I	YACGTR	1 cut(s)	307
PscI	ACATGT	1 cut(s)	116
PspCI	CACGTG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	241
PspOMI	GGGCCC	1 cut(s)	239
PspPI	GGNCC	2 cut(s)	239, 240
PsrI	GAACNNNNNNTAC	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	33
RsaI	GTAC	4 cut(s)	148, 230, 344, 386
RsaNI	GTAC	4 cut(s)	147, 229, 343, 385
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	26, 143
SatI	GCNGC	5 cut(s)	31, 206, 262, 277, 317
Sau3AI	GATC	1 cut(s)	245
Sau96I	GGNCC	2 cut(s)	239, 240
ScaI	AGTACT	1 cut(s)	344
ScrFI	CCNGG	3 cut(s)	243, 321, 350
SduI	GDGCHC	2 cut(s)	243, 287
SmiMI	CAYNNNNRTG	1 cut(s)	115
SmlI	CTYRAG	2 cut(s)	142, 232
SmoI	CTYRAG	2 cut(s)	142, 232
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	5 cut(s)	150, 237, 254, 276, 317
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	3 cut(s)	241, 319, 348
TaiI	ACGT	2 cut(s)	269, 309
TaqI	TCGA	1 cut(s)	212
TasI	AATT	1 cut(s)	166
TatI	WGTACW	2 cut(s)	342, 384
TauI	GCSGC	2 cut(s)	279, 319
Tru1I	TTAA	2 cut(s)	26, 143
Tru9I	TTAA	2 cut(s)	26, 143
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	30, 205, 261
Tsp45I	GTSAC	1 cut(s)	331
TspRI	CASTG	1 cut(s)	90
Vha464I	CTTAAG	1 cut(s)	142
VneI	GTGCAC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	166
XbaI	TCTAGA	1 cut(s)	124
XceI	RCATGY	2 cut(s)	120, 391
XspI	CTAG	1 cut(s)	125
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.