Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010795

Physical Location & Seq

Genomic Coordinates Forward (+)

33000770 .. 33002997

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00108910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGTGGCATCAATCAGAAACTCCATGGTGGTTTTCCTCTTTTTGCTCGCAATTCTATTTCCCATAACAGTGGACTCCGGTAAGCCATATTCACGTGAGAGTAGTGATCAAGCTCTCCAGATTGGTTCAAGTCCTCCAGATTGCTTGAATATGTGTCAGGGCTGCACACCCTGCACTCCTACTCTGAAAACAATTCCACCTGAAGAATATTATCCACAAGCATGGAAATGCGAATGTGGAGGTCGCATATATGAACCTCATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048731 GO:0048856 GO:0048869 GO:0090558 GO:0090626 GO:0090627 GO:0090698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPF

Protein Analysis

88

Amino Acids

9.78

Weight (kDa)

5.5

Isoelectric Point (pI)

60.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPF	PF17181	41 - 86	2.6e-15	Epidermal patterning factor proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30370 AT2G30370 AT2G30370
fragaria_vesca	FvH4_3g40280 FvH4_3g40280 FvH4_6g29861
malus_domestica	MD11G1055500.v1.1
prunus_persica	Prupe.6G043000_v2.0.a1
pyrus_communis	pycom03g04280 pycom11g04530
rosa_chinensis	RchiOBHm_Chr5g0072621
rosa_laevigata	RLG00000036317
rosa_multiflora	Rmu_sc0007873.1_g000018
rosa_roxburghii	Rroxscaffold_1G00008570 Rroxscaffold_2G00108910
rosa_rugosa	Rorug02G0326300 Rorug05G0418900
rosa_samantha	Rh5AG475700 Rh5DG508300
rosa_wichuraiana	Rw5G044170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	222
AcvI	CACGTG	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	129, 148
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	162
BbrPI	CACGTG	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	149
BclI	TGATCA	1 cut(s)	106
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
BmsI	GCATC	1 cut(s)	17
BpmI	CTGGAG	2 cut(s)	101, 120
BsaAI	YACGTR	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	149
BsgI	GTGCAG	2 cut(s)	148, 157
BsiSI	CCGG	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	106
Bsp19I	CCATGG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	106
BssT1I	CCWWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	48
BstDSI	CCRYGG	1 cut(s)	24
BstKTI	GATC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	149
BstXI	CCANNNNNNTGG	2 cut(s)	70, 222
BtgI	CCRYGG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	48
CviAII	CATG	2 cut(s)	25, 222
CviJI	RGCY	3 cut(s)	85, 113, 162
CviKI_1	RGCY	3 cut(s)	85, 113, 162
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	222
Eco72I	CACGTG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	2 cut(s)	28, 225
FaiI	YATR	8 cut(s)	26, 65, 88, 152, 223, 248, 250, 252
FatI	CATG	2 cut(s)	24, 221
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	163
GluI	GCNGC	1 cut(s)	163
GsuI	CTGGAG	2 cut(s)	101, 120
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	2 cut(s)	28, 225
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	17, 186
Hpy188III	TCNNGA	2 cut(s)	118, 137
Hpy8I	GTNNAC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	165, 174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	2 cut(s)	28, 225
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	106
LpnPI	CCDG	6 cut(s)	91, 131, 143, 150, 184, 213
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	17
MaeII	ACGT	1 cut(s)	94
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	1 cut(s)	215
MluCI	AATT	2 cut(s)	51, 192
MlyI	GAGTC	1 cut(s)	68
MnlI	CCTC	4 cut(s)	47, 144, 233, 267
MslI	CAYNNNNRTG	3 cut(s)	68, 220, 226
MspI	CCGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	171
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	28, 225
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	1 cut(s)	68
PmaCI	CACGTG	1 cut(s)	95
PmlI	CACGTG	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	95
PspCI	CACGTG	1 cut(s)	95
RseI	CAYNNNNRTG	3 cut(s)	68, 220, 226
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	1 cut(s)	106
SchI	GAGTC	1 cut(s)	68
SetI	ASST	5 cut(s)	97, 115, 202, 244, 259
SfaNI	GCATC	1 cut(s)	17
SmiMI	CAYNNNNRTG	3 cut(s)	68, 220, 226
Sse9I	AATT	2 cut(s)	51, 192
SspI	AATATT	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	97
TasI	AATT	2 cut(s)	51, 192
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	1 cut(s)	162
TspDTI	ATGAA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.