Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005248

Physical Location & Seq

Genomic Coordinates Reverse (-)

12998105 .. 13000825

Gene Structure 2721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGGCTTCGTCTACGGCTCAGAGCAAGAAGCAGTTTAAGAGGTCTATGACTAAGAAATCACATTCATGGTGGTGGGATAGTCACAATTGTCCCAAGAACTCAAAATGGCTTGCAGAGAATCTAGAAAAGATGGATGATCGAGTGAACCACATGTTAAAACTGATTGAAGAAGACGCAGACTCTTTTGCAAAGAAAGCTCAGATGTATTTTCAGAAACGTCCCGAGTTAATCCAGCTTGTCGAGGAATTCTACCGCATGTATCGCGCATTGGCTGAGCGTTATGATCAAGCTAGTGGTGAACTTCAGAAGAACCATACATCTGAGATCCAGTCACAGAGCTCTCTTGAGATATCATCTCCTACCAAAGAGAAGTTGAGTCGCCGTCAATCTAGCCATAAAGAAGAGGAAGATTCATCGTCTTTGACAGATTCTGGTTCTGATTCTGATCATTCCTCTGCCAATGATGAAGACGGTGACGAGGCATTGATCCGTAGAATGGCTGAACTTGAGCTTGAGCTTCAAGAGACGAAACAGAAGCTCCTTCTCCAGCAGGAAAGTGTTGATGGTGACAACAATGTTGATCTCCTTCACAAAATTACTACATATGAGGGAGAGCTTAAAGAAGCTAATGAGAAGATGCGAATGCACGAAGACGAGATTGCTAATCTGAAGAATCAGCTTCAGAGCTTCATGTCTTTTGACACAGAGGATCATCTTGGTGCTGAACAAAAGAGTGTTGATTTGGATAAAGAGGACACTAAAGAAGATGCAGTAGCTACAAAAGTGCTAGCCTTGGAGGAAGAGCTGAGTATCGCGAAAGAGAAGCTTCAGCACTTTGAGAAAGAGACTTATTCTCTGAAAAATGAGCTCGAGATCGGCAAAGCCGCTGAGGAGAAGCTGAAGAGCTTACAACATGAGCTCGAGTTGGCTCAGAGAGACGCTGATACCTACATAAACAAGCTCAACGCAGAGAAGAAAGAAGTCTTGAAGTTGCAGGAGAGATTGGCAATGGTGAAAACTAGTTTACAGGATAGAGATAACGAGATAAGGGCATTGAAAACTGCGGTTTCAGACGCTGAACAGAAGATATTCCCCGAAAAAGCACAGATCAAGGGAGAAATGTCGAAGATGCTTGAAGAACGAAGCCAACTTGGAGAGCAACTGAGAGAGCTGGAATCACATATAAGGCTGATCAAGGAAGAGAAAGCTGAAACAGAGGAGAAGCTTAGAGGAGGAACTGAGAAAATCAGCGGAATGAGAGACGAGAGCAATGTGCTAAGAGAAGAGATTGGGAAGAGAGAAGAGAAGATAAAGGAAACGGAAAAGCATATGGAGGAGCTTCACATGGAGCAAGTGAGGCTGAGAAGACGGTCAAGTGAGCTTACGGAAGAAGTGGAAAGGACGAGAGTGTCTGCATCGGAAATGGCTGAGCAGAAAAGAGAAGCTATAAGACAGCTTTGTATGTCTCTTGACCATTACAGAGATGGGTACGACAGACTTTGGAGAGTTGTTGCAGGACATAAGAGTAAGAGAGTAGTGGTCTTATCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

KIP1

Protein Analysis

517

Amino Acids

60.23

Weight (kDa)

5.36

Isoelectric Point (pI)

67.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KIP1	PF07765	21 - 94	3.8e-37	KIP1-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30500 AT2G30500 AT2G30500 AT5G58320 AT5G58320 AT5G58320 AT5G58320 AT5G58320
fragaria_vesca	FvH4_3g40650 FvH4_3g40650
malus_domestica	MD03G1050500.v1.1 MD11G1052600.v1.1
prunus_persica	Prupe.6G040100_v2.0.a1 Prupe.6G040100_v2.0.a1
pyrus_communis	pycom03g03990 pycom11g04290 pycom17g24080
rosa_chinensis	RchiOBHm_Chr5g0073401
rosa_laevigata	RLG00000036383
rosa_multiflora	Rmu_co8503505.1_g000001 Rmu_sc0001997.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007840
rosa_rugosa	Rorug05G0423400 Rorug05G0423400
rosa_samantha	Rh5AG479900 Rh5BG501000 Rh5CG524100 Rh5DG513000
rosa_wichuraiana	Rw5G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1408
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	2 cut(s)	264, 815
AciI	CCGC	4 cut(s)	253, 885, 1064, 1251
AclWI	GGATC	3 cut(s)	319, 481, 717
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	5 cut(s)	287, 665, 689, 812, 920
AfaI	GTAC	1 cut(s)	1490
AfiI	CCNNNNNNNGG	1 cut(s)	496
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	5 cut(s)	167, 521, 988, 1057, 1136
AhlI	ACTAGT	1 cut(s)	1019
Alw21I	GWGCWC	3 cut(s)	341, 870, 921
Alw26I	GTCTC	5 cut(s)	518, 839, 930, 1254, 1470
AlwI	GGATC	3 cut(s)	319, 481, 717
AlwNI	CAGNNNCTG	2 cut(s)	431, 1076
Ama87I	CYCGRG	3 cut(s)	221, 869, 920
ApoI	RAATTY	1 cut(s)	245
Asp700I	GAANNNNTTC	1 cut(s)	1088
AspLEI	GCGC	1 cut(s)	266
AsuHPI	GGTGA	4 cut(s)	308, 485, 578, 1024
AsuNHI	GCTAGC	1 cut(s)	787
AvaI	CYCGRG	3 cut(s)	221, 869, 920
BanII	GRGCYC	3 cut(s)	341, 870, 921
BbsI	GAAGAC	4 cut(s)	177, 474, 657, 1372
Bbv12I	GWGCWC	3 cut(s)	341, 870, 921
BbvCI	CCTCAGC	1 cut(s)	888
BccI	CCATC	3 cut(s)	124, 557, 1478
BceAI	ACGGC	2 cut(s)	30, 366
BclI	TGATCA	3 cut(s)	283, 445, 1191
BcoDI	GTCTC	5 cut(s)	518, 839, 930, 1254, 1470
BcuI	ACTAGT	1 cut(s)	1019
BfaI	CTAG	5 cut(s)	122, 291, 390, 788, 1020
BisI	GCNGC	1 cut(s)	885
BlpI	GCTNAGC	2 cut(s)	273, 1428
BlsI	GCNGC	1 cut(s)	886
BmeT110I	CYCGRG	3 cut(s)	221, 869, 920
BmsI	GCATC	4 cut(s)	627, 757, 1119, 1424
BmtI	GCTAGC	1 cut(s)	791
BpiI	GAAGAC	4 cut(s)	177, 474, 657, 1372
BpmI	CTGGAG	1 cut(s)	530
Bpu10I	CCTNAGC	1 cut(s)	888
Bpu1102I	GCTNAGC	2 cut(s)	273, 1428
BpuEI	CTTGAG	3 cut(s)	365, 527, 533
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	792
BsaXI	ACNNNNNCTCC	2 cut(s)	522, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	2 cut(s)	1014, 1276
Bse8I	GATNNNNATC	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	792
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMI	GCAATG	2 cut(s)	1014, 1276
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	4 cut(s)	905, 1232, 1245, 1349
Bsh1236I	CGCG	2 cut(s)	264, 815
BsiHKAI	GWGCWC	3 cut(s)	341, 870, 921
BsiHKCI	CYCGRG	3 cut(s)	221, 869, 920
BslFI	GGGAC	2 cut(s)	75, 204
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmAI	GTCTC	5 cut(s)	518, 839, 930, 1254, 1470
BsmBI	CGTCTC	3 cut(s)	518, 930, 1254
BsmFI	GGGAC	2 cut(s)	75, 204
BsmI	GAATGC	1 cut(s)	648
BsoBI	CYCGRG	3 cut(s)	221, 869, 920
Bsp1286I	GDGCHC	3 cut(s)	341, 870, 921
Bsp1720I	GCTNAGC	2 cut(s)	273, 1428
Bsp68I	TCGCGA	1 cut(s)	815
BspACI	CCGC	4 cut(s)	253, 885, 1064, 1251
BspFNI	CGCG	2 cut(s)	264, 815
BspOI	GCTAGC	1 cut(s)	791
BspPI	GGATC	3 cut(s)	319, 481, 717
BspQI	GCTCTTC	2 cut(s)	795, 896
BsrDI	GCAATG	2 cut(s)	1014, 1276
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	792
BssT1I	CCWWGG	1 cut(s)	792
Bst4CI	ACNGT	2 cut(s)	473, 1371
Bst6I	CTCTTC	7 cut(s)	396, 795, 896, 1194, 1278, 1289, 1296
BstC8I	GCNNGC	2 cut(s)	111, 789
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	2 cut(s)	264, 815
BstHHI	GCGC	1 cut(s)	266
BstMAI	GTCTC	5 cut(s)	518, 839, 930, 1254, 1470
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 261, 1357
BstNSI	RCATGY	2 cut(s)	154, 259
BstUI	CGCG	2 cut(s)	264, 815
BstV2I	GAAGAC	4 cut(s)	177, 474, 657, 1372
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	139
BtuMI	TCGCGA	1 cut(s)	815
Cac8I	GCNNGC	2 cut(s)	111, 789
CaiI	CAGNNNCTG	2 cut(s)	431, 1076
CfoI	GCGC	1 cut(s)	266
CseI	GACGC	3 cut(s)	182, 947, 1082
Csp6I	GTAC	1 cut(s)	1489
CviAII	CATG	6 cut(s)	66, 151, 256, 691, 914, 1345
CviQI	GTAC	1 cut(s)	1489
DrdI	GACNNNNNNGTC	1 cut(s)	1408
DseDI	GACNNNNNNGTC	1 cut(s)	1408
Eam1104I	CTCTTC	7 cut(s)	396, 795, 896, 1194, 1278, 1289, 1296
EarI	CTCTTC	7 cut(s)	396, 795, 896, 1194, 1278, 1289, 1296
Ecl136II	GAGCTC	3 cut(s)	339, 868, 919
Eco130I	CCWWGG	1 cut(s)	792
Eco24I	GRGCYC	3 cut(s)	341, 870, 921
Eco32I	GATATC	1 cut(s)	351
Eco53kI	GAGCTC	3 cut(s)	339, 868, 919
Eco57I	CTGAAG	5 cut(s)	287, 665, 689, 812, 920
Eco88I	CYCGRG	3 cut(s)	221, 869, 920
EcoICRI	GAGCTC	3 cut(s)	339, 868, 919
EcoRI	GAATTC	1 cut(s)	245
EcoRV	GATATC	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	792
EcoT38I	GRGCYC	3 cut(s)	341, 870, 921
ErhI	CCWWGG	1 cut(s)	792
Esp3I	CGTCTC	3 cut(s)	518, 930, 1254
FaeI	CATG	6 cut(s)	69, 154, 259, 694, 917, 1348
FalI	AAGNNNNNCTT	2 cut(s)	810, 842
FaqI	GGGAC	2 cut(s)	75, 204
FatI	CATG	6 cut(s)	65, 150, 255, 690, 913, 1344
FauNDI	CATATG	2 cut(s)	604, 1329
FbaI	TGATCA	3 cut(s)	283, 445, 1191
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	885
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	3 cut(s)	341, 870, 921
Fsp4HI	GCNGC	1 cut(s)	885
FspBI	CTAG	5 cut(s)	122, 291, 390, 788, 1020
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	885
GsuI	CTGGAG	1 cut(s)	530
HgaI	GACGC	3 cut(s)	182, 947, 1082
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	6 cut(s)	69, 154, 259, 694, 917, 1348
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HindIII	AAGCTT	2 cut(s)	824, 1223
HinfI	GANTC	8 cut(s)	118, 179, 376, 410, 428, 440, 673, 1175
HphI	GGTGA	4 cut(s)	308, 485, 578, 1024
Hpy166II	GTNNAC	4 cut(s)	12, 145, 299, 1025
Hpy188III	TCNNGA	8 cut(s)	122, 221, 344, 521, 814, 871, 985, 1469
Hpy8I	GTNNAC	4 cut(s)	12, 145, 299, 1025
HpyAV	CCTTC	2 cut(s)	551, 596
HpyCH4III	ACNGT	2 cut(s)	473, 1371
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	7 cut(s)	113, 188, 646, 770, 994, 1415, 1514
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 261, 1357
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	6 cut(s)	69, 154, 259, 694, 917, 1348
HspAI	GCGC	1 cut(s)	264
Ksp22I	TGATCA	3 cut(s)	283, 445, 1191
LguI	GCTCTTC	2 cut(s)	795, 896
LmnI	GCTCC	3 cut(s)	543, 1336, 1348
LpnPI	CCDG	9 cut(s)	245, 341, 417, 536, 560, 980, 1013, 1157, 1500
LweI	GCATC	4 cut(s)	627, 757, 1119, 1424
MaeI	CTAG	5 cut(s)	122, 291, 390, 788, 1020
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	4 cut(s)	80, 330, 473, 566
MfeI	CAATTG	1 cut(s)	85
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	3 cut(s)	341, 870, 921
MluCI	AATT	3 cut(s)	85, 245, 594
MlyI	GAGTC	2 cut(s)	173, 385
MroXI	GAANNNNTTC	1 cut(s)	1088
MseI	TTAA	4 cut(s)	36, 155, 227, 618
MslI	CAYNNNNRTG	3 cut(s)	64, 70, 717
MspA1I	CMGCKG	2 cut(s)	887, 1251
MunI	CAATTG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	648
MvnI	CGCG	2 cut(s)	264, 815
MwoI	GCNNNNNNNGC	3 cut(s)	194, 261, 1357
NdeI	CATATG	2 cut(s)	604, 1329
NheI	GCTAGC	1 cut(s)	787
NlaIII	CATG	6 cut(s)	69, 154, 259, 694, 917, 1348
NmuCI	GTSAC	4 cut(s)	80, 330, 473, 566
NruI	TCGCGA	1 cut(s)	815
NspI	RCATGY	2 cut(s)	154, 259
PaeR7I	CTCGAG	2 cut(s)	869, 920
PciI	ACATGT	1 cut(s)	150
PciSI	GCTCTTC	2 cut(s)	795, 896
PctI	GAATGC	1 cut(s)	648
PdmI	GAANNNNTTC	1 cut(s)	1088
PfeI	GAWTC	6 cut(s)	118, 410, 428, 440, 673, 1175
PkrI	GCNGC	1 cut(s)	886
PleI	GAGTC	2 cut(s)	173, 384
PpsI	GAGTC	2 cut(s)	173, 384
PscI	ACATGT	1 cut(s)	150
Psp124BI	GAGCTC	3 cut(s)	341, 870, 921
PspXI	VCTCGAGB	1 cut(s)	920
PstNI	CAGNNNCTG	2 cut(s)	431, 1076
PsuI	RGATCY	1 cut(s)	324
RruI	TCGCGA	1 cut(s)	815
RsaI	GTAC	1 cut(s)	1490
RsaNI	GTAC	1 cut(s)	1489
RseI	CAYNNNNRTG	3 cut(s)	64, 70, 717
SacI	GAGCTC	3 cut(s)	341, 870, 921
SapI	GCTCTTC	2 cut(s)	795, 896
SaqAI	TTAA	4 cut(s)	36, 155, 227, 618
SatI	GCNGC	1 cut(s)	885
SchI	GAGTC	2 cut(s)	173, 385
SduI	GDGCHC	3 cut(s)	341, 870, 921
SfaNI	GCATC	4 cut(s)	627, 757, 1119, 1424
Sfr274I	CTCGAG	2 cut(s)	869, 920
SlaI	CTCGAG	2 cut(s)	869, 920
SmiMI	CAYNNNNRTG	3 cut(s)	64, 70, 717
SmlI	CTYRAG	5 cut(s)	344, 506, 512, 869, 920
SmoI	CTYRAG	5 cut(s)	344, 506, 512, 869, 920
SpeI	ACTAGT	1 cut(s)	1019
Sse9I	AATT	3 cut(s)	85, 245, 594
SsiI	CCGC	4 cut(s)	253, 885, 1064, 1251
SspMI	CTAG	5 cut(s)	122, 291, 390, 788, 1020
SstI	GAGCTC	3 cut(s)	341, 870, 921
StyI	CCWWGG	1 cut(s)	792
TaaI	ACNGT	2 cut(s)	473, 1371
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	5 cut(s)	139, 240, 870, 921, 1124
TasI	AATT	3 cut(s)	85, 245, 594
TauI	GCSGC	1 cut(s)	887
TfiI	GAWTC	6 cut(s)	118, 410, 428, 440, 673, 1175
Tru1I	TTAA	4 cut(s)	36, 155, 227, 618
Tru9I	TTAA	4 cut(s)	36, 155, 227, 618
TseFI	GTSAC	4 cut(s)	80, 330, 473, 566
Tsp45I	GTSAC	4 cut(s)	80, 330, 473, 566
TspDTI	ATGAA	4 cut(s)	54, 402, 480, 679
TspGWI	ACGGA	3 cut(s)	479, 1334, 1400
XapI	RAATTY	1 cut(s)	245
XbaI	TCTAGA	1 cut(s)	121
XceI	RCATGY	2 cut(s)	154, 259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1481
XhoI	CTCGAG	2 cut(s)	869, 920
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	1088
XspI	CTAG	5 cut(s)	122, 291, 390, 788, 1020

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.