Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005248

Physical Location & Seq

Genomic Coordinates Forward (+)

3333082 .. 3334449

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g04290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGCTACAGGAAGAAAGTGTAGACAGTTCATTCACGGGTGCAAAACCTGATCATTCCGATGAATTTCCTGCAAAAATTGCAGAATATGAGCAGGAGCTGACAACCACAAATGAAAAATTGCGGGAATCGGAAGAAGAGATTGCAAGGTTGAACATCAAGCTCAAAAGGTACGAGTCTCCGCAGCATAATAATGGTATTAAGGTTGCACTTGAACCAGAGTCTGCACAACATAATAATGGTCTTAAGCTTGCACTTGAACCAGAGGCTGCACAACATAATAATGGTCTTAAGCTTGCACTTGAACCAGAGTCTCCGCAACATAATAATGATCTTAAGCTTGCACTTGAATTATCAAAACCGAAAGAGGCCAAGATACATGAGGGTGAGCTAGACAGGGAGATAGATGAATTGTCAGAGATTCATAAAACGGTTGGTGGGTCGGGAGAAGTTCAAGACCCAGATAGCAAGATTGAGGCATTGATGAAAGAGCTTAGAGCCACAAAAGATAGACTTCAACATTCAGAAAAAGAGATTGCAAGTTTGAGACAGCAACTTGAGAGTAATAAGGCCTCTGAGGAAATCCGACGGTTGCAGGGTCAACTTGTATCCGCTAACAAGGATATTTCTTCGTGGAAAACGAAGTTCAACACAGAGAAACGAGAGGTGTCCAAACTGCAGGAACGAATTTCAAGGTTGAAAAATAGTTTAACAGACAGGGATAATGAAGTCATGGATTTGAAAATAGCAGTGTCTGATGCCGAGGAGAAGATTTTCCCCGAGAAAGCACAGGTTAAGGCTGAAATATCTCGATTGCAATTAGAACGGACACGTTTAGAGGAGCAAATTAAAGACTGGGAATCTCGTGCTCGGTTGTTGGAAGACGAAATCAGACAGATGAAGTCTGGAAAAGCAGAAATGGAGGAGAGACTGAATGGCGAGATCGCACAGTTGAAGGCAGACATCCTTGAGAGAAGCAACCAAATGGAGAATTTAAACAAGGCCCTTGATGCAATGAAAACAGAAAGATATGAGCTTAGCACCAAAGCCACAACACTACAGGCAGAGGTGAGTTCAAGAGACGATCAGATCAATGAGATAAACAAGACCTTGCAGCATATGCAGACGGAACATCAAGAACTGCTCAACGGGGCTGAAGGGGAGCGTAAACAGGTGGAGGAGCTGACAGAAAGAGCAAAGGAACTCGAAGAGGAGATTCAGAGGCAAAGAGTTGTGATCATGGAAGGAGCAGAAGAAAAAAGAGAAGCTATAAGGCAGCTATGCTTCTCGCTCGAACATTACAGGAACGGATACCATAGGCTTAGACAGGCGTGCATGGGAAACAAGAGAGTTCCAGTTTTGGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

KIP1

Protein Analysis

456

Amino Acids

52.42

Weight (kDa)

5.3

Isoelectric Point (pI)

56.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCDC39	PF24161	151 - 409	7.1e-08	Coiled-coil domain-containing protein 39
PUMA_CC	PF24627	163 - 235	1.4e-09	PUMA coiled-coil

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30500 AT2G30500 AT2G30500 AT5G58320 AT5G58320 AT5G58320 AT5G58320 AT5G58320
fragaria_vesca	FvH4_3g40650 FvH4_3g40650
malus_domestica	MD03G1050500.v1.1 MD11G1052600.v1.1
prunus_persica	Prupe.6G040100_v2.0.a1 Prupe.6G040100_v2.0.a1
pyrus_communis	pycom03g03990 pycom11g04290 pycom17g24080
rosa_chinensis	RchiOBHm_Chr5g0073401
rosa_laevigata	RLG00000036383
rosa_multiflora	Rmu_co8503505.1_g000001 Rmu_sc0001997.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007840
rosa_rugosa	Rorug05G0423400 Rorug05G0423400
rosa_samantha	Rh5AG479900 Rh5BG501000 Rh5CG524100 Rh5DG513000
rosa_wichuraiana	Rw5G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	4 cut(s)	121, 179, 314, 609
AcsI	RAATTY	3 cut(s)	62, 684, 988
AcuI	CTGAAG	1 cut(s)	1173
AfaI	GTAC	1 cut(s)	170
AflII	CTTAAG	3 cut(s)	242, 287, 332
AflIII	ACRYGT	1 cut(s)	827
Alw21I	GWGCWC	1 cut(s)	868
Alw26I	GTCTC	5 cut(s)	180, 315, 538, 919, 1071
AlwNI	CAGNNNCTG	4 cut(s)	97, 221, 266, 752
Ama87I	CYCGRG	1 cut(s)	776
AoxI	GGCC	3 cut(s)	366, 567, 999
ApeKI	GCWGC	4 cut(s)	181, 266, 1111, 1273
ApoI	RAATTY	3 cut(s)	62, 684, 988
Asp700I	GAANNNNTTC	1 cut(s)	770
AspS9I	GGNCC	1 cut(s)	1000
AsuHPI	GGTGA	2 cut(s)	395, 1078
AvaI	CYCGRG	1 cut(s)	776
BauI	CACGAG	1 cut(s)	861
BbsI	GAAGAC	1 cut(s)	885
Bbv12I	GWGCWC	1 cut(s)	868
BbvI	GCAGC	4 cut(s)	193, 253, 1123, 1285
BciVI	GTATCC	2 cut(s)	616, 1301
BclI	TGATCA	2 cut(s)	49, 1233
BcoDI	GTCTC	5 cut(s)	180, 315, 538, 919, 1071
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	3 cut(s)	5, 674, 1055
BfrI	CTTAAG	3 cut(s)	242, 287, 332
BfuI	GTATCC	2 cut(s)	616, 1301
BisI	GCNGC	4 cut(s)	182, 267, 1112, 1274
BlpI	GCTNAGC	1 cut(s)	1034
BlsI	GCNGC	4 cut(s)	183, 268, 1113, 1275
BmeT110I	CYCGRG	1 cut(s)	776
BmgT120I	GGNCC	1 cut(s)	1000
BmrI	ACTGGG	1 cut(s)	862
BmsI	GCATC	2 cut(s)	745, 997
BmuI	ACTGGG	1 cut(s)	862
BpiI	GAAGAC	1 cut(s)	885
Bpu1102I	GCTNAGC	1 cut(s)	1034
BpuEI	CTTGAG	2 cut(s)	575, 986
BsaJI	CCNNGG	1 cut(s)	759
Bse1I	ACTGG	2 cut(s)	857, 1352
Bse3DI	GCAATG	1 cut(s)	1017
BseDI	CCNNGG	1 cut(s)	759
BseGI	GGATG	1 cut(s)	960
BseMI	GCAATG	1 cut(s)	1017
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	2 cut(s)	857, 1352
BseRI	GAGGAG	5 cut(s)	776, 851, 935, 1190, 1223
BseXI	GCAGC	4 cut(s)	193, 253, 1123, 1285
BsgI	GTGCAG	2 cut(s)	207, 252
BshFI	GGCC	3 cut(s)	368, 569, 1001
BsiHKAI	GWGCWC	1 cut(s)	868
BsiHKCI	CYCGRG	1 cut(s)	776
BsmAI	GTCTC	5 cut(s)	180, 315, 538, 919, 1071
BsmBI	CGTCTC	1 cut(s)	1071
BsnI	GGCC	3 cut(s)	368, 569, 1001
BsoBI	CYCGRG	1 cut(s)	776
Bsp1286I	GDGCHC	1 cut(s)	868
Bsp143I	GATC	6 cut(s)	49, 328, 939, 1081, 1086, 1233
Bsp1720I	GCTNAGC	1 cut(s)	1034
BspACI	CCGC	4 cut(s)	121, 179, 314, 609
BspANI	GGCC	3 cut(s)	368, 569, 1001
BspCNI	CTCAG	1 cut(s)	565
BspMAI	CTGCAG	1 cut(s)	678
BspTI	CTTAAG	3 cut(s)	242, 287, 332
BsrDI	GCAATG	1 cut(s)	1017
BsrI	ACTGG	2 cut(s)	857, 1352
BssECI	CCNNGG	1 cut(s)	759
BssMI	GATC	6 cut(s)	49, 328, 939, 1081, 1086, 1233
BssSI	CACGAG	1 cut(s)	861
Bst2BI	CACGAG	1 cut(s)	861
Bst4CI	ACNGT	4 cut(s)	26, 430, 588, 948
Bst6I	CTCTTC	2 cut(s)	129, 1200
BstAFI	CTTAAG	3 cut(s)	242, 287, 332
BstAPI	GCANNNNNTGC	2 cut(s)	77, 1117
BstC8I	GCNNGC	4 cut(s)	249, 294, 339, 1330
BstDEI	CTNAG	4 cut(s)	491, 573, 1034, 1319
BstF5I	GGATG	1 cut(s)	960
BstKTI	GATC	6 cut(s)	52, 331, 942, 1084, 1089, 1236
BstMAI	GTCTC	5 cut(s)	180, 315, 538, 919, 1071
BstMBI	GATC	6 cut(s)	49, 328, 939, 1081, 1086, 1233
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 1007, 1117
BstSFI	CTRYAG	3 cut(s)	5, 674, 1055
BstV1I	GCAGC	4 cut(s)	193, 253, 1123, 1285
BstV2I	GAAGAC	1 cut(s)	885
BsuI	GTATCC	2 cut(s)	616, 1301
BsuRI	GGCC	3 cut(s)	368, 569, 1001
BtsCI	GGATG	1 cut(s)	960
BtsI	GCAGTG	1 cut(s)	753
BtsIMutI	CAGTG	1 cut(s)	753
Cac8I	GCNNGC	4 cut(s)	249, 294, 339, 1330
CaiI	CAGNNNCTG	4 cut(s)	97, 221, 266, 752
Cfr13I	GGNCC	1 cut(s)	1000
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	4 cut(s)	377, 730, 1237, 1333
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	4 cut(s)	491, 573, 1034, 1319
DpnI	GATC	6 cut(s)	51, 330, 941, 1083, 1088, 1235
DpnII	GATC	6 cut(s)	49, 328, 939, 1081, 1086, 1233
DraI	TTTAAA	1 cut(s)	993
Eam1104I	CTCTTC	2 cut(s)	129, 1200
EarI	CTCTTC	2 cut(s)	129, 1200
Eco147I	AGGCCT	1 cut(s)	569
Eco57I	CTGAAG	1 cut(s)	1173
Eco88I	CYCGRG	1 cut(s)	776
EcoO109I	RGGNCCY	1 cut(s)	1000
Esp3I	CGTCTC	1 cut(s)	1071
FaeI	CATG	4 cut(s)	380, 733, 1240, 1336
FalI	AAGNNNNNCTT	2 cut(s)	495, 527
FatI	CATG	4 cut(s)	376, 729, 1236, 1332
FauI	CCCGC	1 cut(s)	114
FauNDI	CATATG	1 cut(s)	1116
FbaI	TGATCA	2 cut(s)	49, 1233
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	4 cut(s)	182, 267, 1112, 1274
FokI	GGATG	1 cut(s)	947
Fsp4HI	GCNGC	4 cut(s)	182, 267, 1112, 1274
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	4 cut(s)	182, 267, 1112, 1274
HaeIII	GGCC	3 cut(s)	368, 569, 1001
Hin1II	CATG	4 cut(s)	380, 733, 1240, 1336
HincII	GTYRAC	1 cut(s)	599
HindII	GTYRAC	1 cut(s)	599
HindIII	AAGCTT	3 cut(s)	245, 290, 335
HinfI	GANTC	7 cut(s)	125, 173, 218, 308, 418, 857, 1213
HphI	GGTGA	2 cut(s)	395, 1078
Hpy166II	GTNNAC	3 cut(s)	22, 599, 1166
Hpy188III	TCNNGA	6 cut(s)	441, 452, 807, 903, 1074, 1133
Hpy8I	GTNNAC	3 cut(s)	22, 599, 1166
Hpy99I	CGWCG	1 cut(s)	588
HpyAV	CCTTC	3 cut(s)	946, 1148, 1235
HpyCH4III	ACNGT	4 cut(s)	26, 430, 588, 948
HpyCH4IV	ACGT	1 cut(s)	829
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 1007, 1117
HpyF3I	CTNAG	4 cut(s)	491, 573, 1034, 1319
HpySE526I	ACGT	1 cut(s)	829
Hsp92II	CATG	4 cut(s)	380, 733, 1240, 1336
Ksp22I	TGATCA	2 cut(s)	49, 1233
Kzo9I	GATC	6 cut(s)	49, 328, 939, 1081, 1086, 1233
LmnI	GCTCC	5 cut(s)	94, 838, 1159, 1177, 1244
Lsp1109I	GCAGC	4 cut(s)	193, 253, 1123, 1285
LweI	GCATC	2 cut(s)	745, 997
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	829
MalI	GATC	6 cut(s)	51, 330, 941, 1083, 1088, 1235
MboI	GATC	6 cut(s)	49, 328, 939, 1081, 1086, 1233
MboII	GAAGA	8 cut(s)	23, 143, 146, 618, 778, 890, 1217, 1262
MhlI	GDGCHC	1 cut(s)	868
MluCI	AATT	9 cut(s)	62, 75, 116, 347, 407, 684, 815, 843, 988
MlyI	GAGTC	3 cut(s)	182, 227, 317
MmeI	TCCRAC	2 cut(s)	607, 855
MroXI	GAANNNNTTC	1 cut(s)	770
MseI	TTAA	9 cut(s)	198, 243, 288, 333, 707, 792, 846, 992, 1366
MslI	CAYNNNNRTG	6 cut(s)	57, 189, 234, 279, 324, 381
MspCI	CTTAAG	3 cut(s)	242, 287, 332
MwoI	GCNNNNNNNGC	3 cut(s)	77, 1007, 1117
NdeI	CATATG	1 cut(s)	1116
NdeII	GATC	6 cut(s)	49, 328, 939, 1081, 1086, 1233
NlaIII	CATG	4 cut(s)	380, 733, 1240, 1336
NmeAIII	GCCGAG	1 cut(s)	784
PceI	AGGCCT	1 cut(s)	569
PcsI	WCGNNNNNNNCGW	1 cut(s)	635
PdmI	GAANNNNTTC	1 cut(s)	770
PfeI	GAWTC	4 cut(s)	125, 418, 857, 1213
PkrI	GCNGC	4 cut(s)	183, 268, 1113, 1275
PleI	GAGTC	3 cut(s)	181, 226, 316
PpsI	GAGTC	3 cut(s)	181, 226, 316
PspPI	GGNCC	1 cut(s)	1000
PstI	CTGCAG	1 cut(s)	678
PstNI	CAGNNNCTG	4 cut(s)	97, 221, 266, 752
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	6 cut(s)	57, 189, 234, 279, 324, 381
SaqAI	TTAA	9 cut(s)	198, 243, 288, 333, 707, 792, 846, 992, 1366
SatI	GCNGC	4 cut(s)	182, 267, 1112, 1274
Sau3AI	GATC	6 cut(s)	49, 328, 939, 1081, 1086, 1233
Sau96I	GGNCC	1 cut(s)	1000
SchI	GAGTC	3 cut(s)	182, 227, 317
SduI	GDGCHC	1 cut(s)	868
SfaNI	GCATC	2 cut(s)	745, 997
SfcI	CTRYAG	3 cut(s)	5, 674, 1055
SmiMI	CAYNNNNRTG	6 cut(s)	57, 189, 234, 279, 324, 381
SmlI	CTYRAG	5 cut(s)	242, 287, 332, 554, 965
SmoI	CTYRAG	5 cut(s)	242, 287, 332, 554, 965
Sse9I	AATT	9 cut(s)	62, 75, 116, 347, 407, 684, 815, 843, 988
SseBI	AGGCCT	1 cut(s)	569
SsiI	CCGC	4 cut(s)	121, 179, 314, 609
SspMI	CTAG	1 cut(s)	389
StuI	AGGCCT	1 cut(s)	569
TaaI	ACNGT	4 cut(s)	26, 430, 588, 948
TaiI	ACGT	1 cut(s)	832
TaqI	TCGA	3 cut(s)	808, 1203, 1290
TasI	AATT	9 cut(s)	62, 75, 116, 347, 407, 684, 815, 843, 988
TfiI	GAWTC	4 cut(s)	125, 418, 857, 1213
Tru1I	TTAA	9 cut(s)	198, 243, 288, 333, 707, 792, 846, 992, 1366
Tru9I	TTAA	9 cut(s)	198, 243, 288, 333, 707, 792, 846, 992, 1366
TscAI	CASTG	1 cut(s)	753
TseI	GCWGC	4 cut(s)	181, 266, 1111, 1273
TspDTI	ATGAA	9 cut(s)	18, 75, 126, 410, 420, 497, 738, 911, 1028
TspGWI	ACGGA	3 cut(s)	838, 1139, 1320
TspRI	CASTG	1 cut(s)	753
Vha464I	CTTAAG	3 cut(s)	242, 287, 332
XapI	RAATTY	3 cut(s)	62, 684, 988
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	770
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.