Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005248

Physical Location & Seq

Genomic Coordinates Reverse (-)

78296727 .. 78297365

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G044620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGATTTGAAAATAGCGGTATCTGATGCTGAGGAGAAGATATTCCCAGAGAAGGCACAGGTAAAGGCCGAAATATCTAGACTGTATTCGGAACGGACGCAACTGGAGGAGCAGATTAGAGACTGGGAGTCTCGAGGACGCTCTTTGGAGGATGAAATCAGAATGATTAAGGCTGGGAAAGCAGAAATGGAGGAGAGACTTACTAGCGAAATTGAGCAGTTAAAGGCAGAAATCATTGAGATAGGCAATCACATCGGCAACTTACATAAGGCCCTTGATGCTATGAAAGCAGAAGGAGATGAGCTTAGCACAAAAGTTGTAACACTTAAAGCAGAAGTTAGTTATAGAGATGATAAGATAAATGAGGTGGACATTCAGCTGCAGCAGTTGCACAAGGAGCAAGTGGAACTGGTTTCCGGGGCCGAAGGGGCATGGAAATTGGTGGAGGAGCTAACAGCAAGAACAAAAGAACTCGAAGAGGAGATTCAGAGGCAAAGAGTCATGATTTTAGAAGGAGCAGAAGAAAAGAGAGAAGCTATAAGGCAGTTGTGCTTCTCACTCGAACATTATAGGAACGGTTATCACAGGCTTCGGCAGGCTTGCATGGGACACAAGAGAGTTCCGGTTTTGGCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

KIP1

Protein Analysis

212

Amino Acids

24.52

Weight (kDa)

5.28

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30500 AT2G30500 AT2G30500 AT5G58320 AT5G58320 AT5G58320 AT5G58320 AT5G58320
fragaria_vesca	FvH4_3g40650 FvH4_3g40650
malus_domestica	MD03G1050500.v1.1 MD11G1052600.v1.1
prunus_persica	Prupe.6G040100_v2.0.a1 Prupe.6G040100_v2.0.a1
pyrus_communis	pycom03g03990 pycom11g04290 pycom17g24080
rosa_chinensis	RchiOBHm_Chr5g0073401
rosa_laevigata	RLG00000036383
rosa_multiflora	Rmu_co8503505.1_g000001 Rmu_sc0001997.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007840
rosa_rugosa	Rorug05G0423400 Rorug05G0423400
rosa_samantha	Rh5AG479900 Rh5BG501000 Rh5CG524100 Rh5DG513000
rosa_wichuraiana	Rw5G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	632
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	10
AhdI	GACNNNNNGTC	1 cut(s)	127
AluBI	AGCT	4 cut(s)	304, 379, 451, 536
AluI	AGCT	4 cut(s)	304, 379, 451, 536
Alw26I	GTCTC	3 cut(s)	114, 135, 190
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	3 cut(s)	66, 270, 420
ApeKI	GCWGC	2 cut(s)	379, 382
Asp700I	GAANNNNTTC	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	271, 420
AsuC2I	CCSGG	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	366, 394
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	3 cut(s)	114, 135, 190
BfaI	CTAG	2 cut(s)	78, 204
BfmI	CTRYAG	1 cut(s)	380
BglI	GCCNNNNNGGC	1 cut(s)	428
BisI	GCNGC	2 cut(s)	380, 383
BlpI	GCTNAGC	1 cut(s)	305
BlsI	GCNGC	2 cut(s)	381, 384
Bme1390I	CCNGG	1 cut(s)	418
BmeRI	GACNNNNNGTC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	271, 420
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	1 cut(s)	418
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	2 cut(s)	16, 268
BmuI	ACTGGG	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	418
BsaHI	GRCGYC	1 cut(s)	632
BsaJI	CCNNGG	1 cut(s)	417
BsaWI	WCCGGW	1 cut(s)	622
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	3 cut(s)	108, 128, 414
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	3 cut(s)	108, 128, 414
BseRI	GAGGAG	5 cut(s)	47, 122, 206, 461, 494
BseXI	GCAGC	2 cut(s)	366, 394
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	3 cut(s)	68, 272, 422
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	417, 623
BslFI	GGGAC	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	3 cut(s)	114, 135, 190
BsmFI	GGGAC	1 cut(s)	621
BsnI	GGCC	3 cut(s)	68, 272, 422
BsoBI	CYCGRG	1 cut(s)	132
Bsp1720I	GCTNAGC	1 cut(s)	305
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	3 cut(s)	68, 272, 422
BspCNI	CTCAG	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	421
BspMAI	CTGCAG	1 cut(s)	384
BsrI	ACTGG	3 cut(s)	108, 128, 414
BssECI	CCNNGG	1 cut(s)	417
BssNI	GRCGYC	1 cut(s)	632
Bst4CI	ACNGT	2 cut(s)	84, 578
Bst6I	CTCTTC	1 cut(s)	471
BstACI	GRCGYC	1 cut(s)	632
BstAPI	GCANNNNNTGC	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	597, 601
BstDEI	CTNAG	2 cut(s)	30, 305
BstF5I	GGATG	1 cut(s)	157
BstMAI	GTCTC	3 cut(s)	114, 135, 190
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 278, 287, 388, 397, 428
BstSCI	CCNGG	1 cut(s)	416
BstSFI	CTRYAG	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	366, 394
BsuRI	GGCC	3 cut(s)	68, 272, 422
BtsCI	GGATG	1 cut(s)	157
Cac8I	GCNNGC	2 cut(s)	597, 601
CciI	TCATGA	1 cut(s)	501
Cfr13I	GGNCC	2 cut(s)	271, 420
CseI	GACGC	3 cut(s)	106, 147, 621
CviAII	CATG	3 cut(s)	432, 502, 604
DdeI	CTNAG	2 cut(s)	30, 305
DriI	GACNNNNNGTC	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	471
Eam1105I	GACNNNNNGTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	271
FaeI	CATG	3 cut(s)	435, 505, 607
FaiI	YATR	8 cut(s)	267, 284, 345, 433, 503, 539, 570, 605
FaqI	GGGAC	1 cut(s)	621
FatI	CATG	3 cut(s)	431, 501, 603
Fnu4HI	GCNGC	2 cut(s)	380, 383
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	380, 383
FspBI	CTAG	2 cut(s)	78, 204
GluI	GCNGC	2 cut(s)	380, 383
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	3 cut(s)	68, 272, 422
HapII	CCGG	2 cut(s)	417, 623
HgaI	GACGC	3 cut(s)	106, 147, 621
Hin1I	GRCGYC	1 cut(s)	632
Hin1II	CATG	3 cut(s)	435, 505, 607
HinfI	GANTC	3 cut(s)	128, 484, 498
HpaII	CCGG	2 cut(s)	417, 623
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	4 cut(s)	25, 91, 161, 489
Hpy188III	TCNNGA	4 cut(s)	78, 132, 502, 636
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	4 cut(s)	46, 287, 419, 506
HpyCH4III	ACNGT	2 cut(s)	84, 578
HpyCH4V	TGCA	3 cut(s)	382, 391, 603
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 278, 287, 388, 397, 428
HpyF3I	CTNAG	2 cut(s)	30, 305
Hsp92I	GRCGYC	1 cut(s)	632
Hsp92II	CATG	3 cut(s)	435, 505, 607
LmnI	GCTCC	4 cut(s)	109, 397, 448, 515
LpnPI	CCDG	9 cut(s)	44, 60, 89, 109, 159, 395, 430, 571, 581
Lsp1109I	GCAGC	2 cut(s)	366, 394
LweI	GCATC	2 cut(s)	16, 268
MaeI	CTAG	2 cut(s)	78, 204
MaeIII	GTNAC	1 cut(s)	319
MboII	GAAGA	3 cut(s)	49, 488, 533
MluCI	AATT	2 cut(s)	210, 437
MlyI	GAGTC	2 cut(s)	137, 507
MnlI	CCTC	9 cut(s)	25, 100, 128, 142, 184, 358, 439, 472, 483
MroXI	GAANNNNTTC	1 cut(s)	41
MseI	TTAA	3 cut(s)	168, 221, 327
MspA1I	CMGCKG	1 cut(s)	379
MspI	CCGG	2 cut(s)	417, 623
MspR9I	CCNGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	6 cut(s)	179, 278, 287, 388, 397, 428
NciI	CCSGG	1 cut(s)	418
NlaIII	CATG	3 cut(s)	435, 505, 607
NlaIV	GGNNCC	1 cut(s)	421
PaeR7I	CTCGAG	1 cut(s)	132
PagI	TCATGA	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	484
PkrI	GCNGC	2 cut(s)	381, 384
PleI	GAGTC	2 cut(s)	136, 506
PpsI	GAGTC	2 cut(s)	136, 506
PspFI	CCCAGC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	2 cut(s)	271, 420
PstI	CTGCAG	1 cut(s)	384
PvuII	CAGCTG	1 cut(s)	379
SaqAI	TTAA	3 cut(s)	168, 221, 327
SatI	GCNGC	2 cut(s)	380, 383
Sau96I	GGNCC	2 cut(s)	271, 420
SchI	GAGTC	2 cut(s)	137, 507
ScrFI	CCNGG	1 cut(s)	418
SetI	ASST	6 cut(s)	63, 306, 369, 381, 453, 538
SfaNI	GCATC	2 cut(s)	16, 268
SfcI	CTRYAG	1 cut(s)	380
Sfr274I	CTCGAG	1 cut(s)	132
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	2 cut(s)	210, 437
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	2 cut(s)	78, 204
StyD4I	CCNGG	1 cut(s)	416
TaaI	ACNGT	2 cut(s)	84, 578
TaqI	TCGA	3 cut(s)	133, 474, 561
TasI	AATT	2 cut(s)	210, 437
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	3 cut(s)	168, 221, 327
Tru9I	TTAA	3 cut(s)	168, 221, 327
TseI	GCWGC	2 cut(s)	379, 382
TspDTI	ATGAA	2 cut(s)	168, 299
TspGWI	ACGGA	1 cut(s)	109
XbaI	TCTAGA	1 cut(s)	77
XhoI	CTCGAG	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	2 cut(s)	78, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.