Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005248

Physical Location & Seq

Genomic Coordinates Forward (+)

3150095 .. 3154406

Gene Structure 4312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03990.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGACGGCAGATATTGCCCCAACTATGCAGGAAGCTGCGATGGGTCACATGTCAAATCCTCAAACCCAAATTTTCCCATTTCCCAAACACGAACACACACTCTCTCTCTCTCTCTCTCTCTCTCTCCAGCACTGGGATCTGTCTTCTTTCTCTTCAGTCTGCAAGAACAAAGCTCAAAGATTCTTGCGGAAGTATCAACTCGAAGTTTCAACGATATTAGCAAATGGCTAATTCTTTGGGTCTTTCACAGATCAAGCATAAGATATCTTGTTTTTACATTTCAGGTTGAGTCCAATAAGACTATGAAGAGGTTAGAATCAAGAAAGTCTCGTTCGTGGTGGTGGGATAGTCACATCAGTCCCAAGAACTCTAAGTGGCTTGCAGATAATCTCGAGGAGATGGATCGAAGCATCAAACGGATGTTGAAGCTGATCGAAGAGGATGGGGATTCATTTGCCAAAAAGGCTGAAATGTATTATCAAAAGAGGCCTGAATTGATTGCTCATGTTGAAGAGTTTTATCGCTTGTACCGGTCCCTGGCCGAACGTTATGATCATGTGACAGGAGAATTGCGGAAGAATGCACCCTCGGATCTCCAATCCCAGAGTTCATGCCTTTCTGACATTGGTTCAGAACTGCCATCTGCATTGCCCTCTCCTGATGTCCAACCCGGAAAGCTAGGTCGTCGTAAATCTGGCCCTCGTGCTGCTGGCTTTGATTTCTTCCTTGGCCCTGGTGGAAACAGCTCAGATCATTACCAGAAAGAGGGAGATGAATCATTTTCATTAGCCGATTATTCTGAGCCAGAATCTGATGATTCTTCAGTCAACAATTATTCAACTCCCTTGTCAAATGGTCTTGATCAAGGGCAGACGAGAAAGATAATTGAGTTGGAAATTGAGCTTCGTGAAGCGAAGGAGAAGCTCCGGATGCAGCAGGAAGAGAATGTGGACAGTTCATTCACGGGTGCAAAACCTGATCATACCGAAGAATTTCCTGCAAAAATTGCAGAATATGAGGAGGAGCTGACTAGCAGAAATGAAAAATTGCGGGAATCGGAAGAAGAGATTGCCAGGTTGAACATCAAGCTCAAAAGGTACGAGTCTTCAATAATGGTCTTAAGCTTGCACTTGAAGCAGAGCCTGCACAACATAATAATGGTCTTAAGCTTGCACTTGAACCAGAGCCTGCACAACATAATAATGGTCTTAAGCTTGCTCTTGAATTTTCAAAACCGAAAGAGACCAAGATACGTGAGGGTGCCAGAGACAGGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

KIP1

Protein Analysis

427

Amino Acids

48.96

Weight (kDa)

6.49

Isoelectric Point (pI)

70.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30500 AT2G30500 AT2G30500 AT5G58320 AT5G58320 AT5G58320 AT5G58320 AT5G58320
fragaria_vesca	FvH4_3g40650 FvH4_3g40650
malus_domestica	MD03G1050500.v1.1 MD11G1052600.v1.1
prunus_persica	Prupe.6G040100_v2.0.a1 Prupe.6G040100_v2.0.a1
pyrus_communis	pycom03g03990 pycom11g04290 pycom17g24080
rosa_chinensis	RchiOBHm_Chr5g0073401
rosa_laevigata	RLG00000036383
rosa_multiflora	Rmu_co8503505.1_g000001 Rmu_sc0001997.1_g000010
rosa_roxburghii	Rroxscaffold_1G00007840
rosa_rugosa	Rorug05G0423400 Rorug05G0423400
rosa_samantha	Rh5AG479900 Rh5BG501000 Rh5CG524100 Rh5DG513000
rosa_wichuraiana	Rw5G044620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1261
AccIII	TCCGGA	1 cut(s)	927
AciI	CCGC	3 cut(s)	188, 574, 1051
AclI	AACGTT	1 cut(s)	547
AclWI	GGATC	3 cut(s)	145, 411, 600
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	3 cut(s)	70, 992, 1225
AcuI	CTGAAG	2 cut(s)	139, 807
AfaI	GTAC	2 cut(s)	530, 1100
AfiI	CCNNNNNNNGG	4 cut(s)	134, 538, 766, 1271
AflII	CTTAAG	3 cut(s)	1120, 1165, 1210
AflIII	ACRYGT	1 cut(s)	49
AgeI	ACCGGT	1 cut(s)	531
AjnI	CCWGG	3 cut(s)	537, 733, 1073
Alw26I	GTCTC	3 cut(s)	333, 1237, 1262
AlwI	GGATC	3 cut(s)	145, 411, 600
AlwNI	CAGNNNCTG	3 cut(s)	812, 1144, 1189
Ama87I	CYCGRG	1 cut(s)	392
Aor13HI	TCCGGA	1 cut(s)	927
AoxI	GGCC	4 cut(s)	488, 540, 697, 730
ApeKI	GCWGC	3 cut(s)	36, 707, 934
ApoI	RAATTY	3 cut(s)	70, 992, 1225
AsiGI	ACCGGT	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	993
AspS9I	GGNCC	3 cut(s)	534, 698, 731
AsuC2I	CCSGG	1 cut(s)	672
AvaI	CYCGRG	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	534
BanI	GGYRCC	1 cut(s)	1261
BauI	CACGAG	1 cut(s)	702
BbsI	GAAGAC	2 cut(s)	136, 1098
BbvI	GCAGC	3 cut(s)	23, 694, 946
BccI	CCATC	4 cut(s)	35, 394, 437, 649
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	3 cut(s)	539, 735, 1075
BclI	TGATCA	3 cut(s)	553, 862, 979
BcnI	CCSGG	1 cut(s)	672
BcoDI	GTCTC	3 cut(s)	333, 1237, 1262
BfaI	CTAG	2 cut(s)	680, 1032
BfrI	CTTAAG	3 cut(s)	1120, 1165, 1210
BglI	GCCNNNNNGGC	1 cut(s)	464
BisI	GCNGC	3 cut(s)	37, 708, 935
BlsI	GCNGC	3 cut(s)	38, 709, 936
Bme1390I	CCNGG	4 cut(s)	539, 672, 735, 1075
Bme18I	GGWCC	1 cut(s)	534
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	3 cut(s)	534, 698, 731
BmiI	GGNNCC	2 cut(s)	536, 1263
BmrFI	CCNGG	4 cut(s)	539, 672, 735, 1075
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	2 cut(s)	420, 921
BmuI	ACTGGG	1 cut(s)	143
BpiI	GAAGAC	2 cut(s)	136, 1098
BpmI	CTGGAG	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	672
BsaAI	YACGTR	1 cut(s)	1255
BsaI	GGTCTC	1 cut(s)	1237
BsaJI	CCNNGG	4 cut(s)	537, 588, 727, 733
BsaWI	WCCGGW	2 cut(s)	531, 927
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 538, 766, 1271
Bse118I	RCCGGY	1 cut(s)	531
Bse1I	ACTGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	647
BseAI	TCCGGA	1 cut(s)	927
BseBI	CCWGG	3 cut(s)	539, 735, 1075
BseDI	CCNNGG	4 cut(s)	537, 588, 727, 733
BseGI	GGATG	3 cut(s)	426, 448, 936
BseLI	CCNNNNNNNGG	4 cut(s)	134, 538, 766, 1271
BseMI	GCAATG	1 cut(s)	647
BseMII	CTCAG	2 cut(s)	762, 792
BseNI	ACTGG	1 cut(s)	138
BseRI	GAGGAG	3 cut(s)	410, 1034, 1037
BseXI	GCAGC	3 cut(s)	23, 694, 946
BsgI	GTGCAG	2 cut(s)	1130, 1175
BshFI	GGCC	4 cut(s)	490, 542, 699, 732
BshNI	GGYRCC	1 cut(s)	1261
BshTI	ACCGGT	1 cut(s)	531
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	3 cut(s)	532, 672, 928
BslFI	GGGAC	2 cut(s)	345, 520
BslI	CCNNNNNNNGG	4 cut(s)	134, 538, 766, 1271
BsmAI	GTCTC	3 cut(s)	333, 1237, 1262
BsmFI	GGGAC	2 cut(s)	345, 520
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	4 cut(s)	490, 542, 699, 732
Bso31I	GGTCTC	1 cut(s)	1237
BsoBI	CYCGRG	1 cut(s)	392
Bsp13I	TCCGGA	1 cut(s)	927
Bsp143I	GATC	9 cut(s)	137, 251, 403, 432, 553, 592, 751, 862, 979
BspACI	CCGC	3 cut(s)	188, 574, 1051
BspANI	GGCC	4 cut(s)	490, 542, 699, 732
BspCNI	CTCAG	2 cut(s)	761, 793
BspEI	TCCGGA	1 cut(s)	927
BspLI	GGNNCC	2 cut(s)	536, 1263
BspPI	GGATC	3 cut(s)	145, 411, 600
BspT107I	GGYRCC	1 cut(s)	1261
BspTI	CTTAAG	3 cut(s)	1120, 1165, 1210
BspTNI	GGTCTC	1 cut(s)	1237
BsrDI	GCAATG	1 cut(s)	647
BsrFI	RCCGGY	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	531
BssECI	CCNNGG	4 cut(s)	537, 588, 727, 733
BssMI	GATC	9 cut(s)	137, 251, 403, 432, 553, 592, 751, 862, 979
BssSI	CACGAG	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	727
Bst2BI	CACGAG	1 cut(s)	702
Bst2UI	CCWGG	3 cut(s)	539, 735, 1075
Bst4CI	ACNGT	1 cut(s)	956
Bst6I	CTCTTC	6 cut(s)	158, 302, 432, 507, 936, 1059
BstAFI	CTTAAG	3 cut(s)	1120, 1165, 1210
BstAPI	GCANNNNNTGC	3 cut(s)	15, 1007, 1144
BstBAI	YACGTR	1 cut(s)	1255
BstC8I	GCNNGC	7 cut(s)	381, 712, 1127, 1145, 1172, 1190, 1217
BstDEI	CTNAG	3 cut(s)	372, 748, 801
BstF5I	GGATG	3 cut(s)	426, 448, 936
BstKTI	GATC	9 cut(s)	140, 254, 406, 435, 556, 595, 754, 865, 982
BstMAI	GTCTC	3 cut(s)	333, 1237, 1262
BstMBI	GATC	9 cut(s)	137, 251, 403, 432, 553, 592, 751, 862, 979
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 464, 931, 1007, 1135, 1144
BstNI	CCWGG	3 cut(s)	539, 735, 1075
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	4 cut(s)	537, 670, 733, 1073
BstV1I	GCAGC	3 cut(s)	23, 694, 946
BstV2I	GAAGAC	2 cut(s)	136, 1098
BstX2I	RGATCY	2 cut(s)	137, 592
BstYI	RGATCY	2 cut(s)	137, 592
BsuRI	GGCC	4 cut(s)	490, 542, 699, 732
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	3 cut(s)	426, 448, 936
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	7 cut(s)	381, 712, 1127, 1145, 1172, 1190, 1217
CaiI	CAGNNNCTG	3 cut(s)	812, 1144, 1189
Cfr10I	RCCGGY	1 cut(s)	531
Cfr13I	GGNCC	3 cut(s)	534, 698, 731
Csp6I	GTAC	2 cut(s)	529, 1099
CspAI	ACCGGT	1 cut(s)	531
CviAII	CATG	4 cut(s)	50, 506, 557, 612
CviQI	GTAC	2 cut(s)	529, 1099
DdeI	CTNAG	3 cut(s)	372, 748, 801
DpnI	GATC	9 cut(s)	139, 253, 405, 434, 555, 594, 753, 864, 981
DpnII	GATC	9 cut(s)	137, 251, 403, 432, 553, 592, 751, 862, 979
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	6 cut(s)	158, 302, 432, 507, 936, 1059
EarI	CTCTTC	6 cut(s)	158, 302, 432, 507, 936, 1059
Eco130I	CCWWGG	1 cut(s)	727
Eco147I	AGGCCT	1 cut(s)	490
Eco31I	GGTCTC	1 cut(s)	1237
Eco32I	GATATC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	534
Eco57I	CTGAAG	2 cut(s)	139, 807
Eco88I	CYCGRG	1 cut(s)	392
EcoRII	CCWGG	3 cut(s)	537, 733, 1073
EcoRV	GATATC	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	727
FaeI	CATG	4 cut(s)	53, 509, 560, 615
FaqI	GGGAC	2 cut(s)	345, 520
FatI	CATG	4 cut(s)	49, 505, 556, 611
FauI	CCCGC	1 cut(s)	1044
FbaI	TGATCA	3 cut(s)	553, 862, 979
Fnu4HI	GCNGC	3 cut(s)	37, 708, 935
FokI	GGATG	3 cut(s)	433, 455, 943
Fsp4HI	GCNGC	3 cut(s)	37, 708, 935
FspBI	CTAG	2 cut(s)	680, 1032
GluI	GCNGC	3 cut(s)	37, 708, 935
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	4 cut(s)	490, 542, 699, 732
HapII	CCGG	3 cut(s)	532, 672, 928
Hin1II	CATG	4 cut(s)	53, 509, 560, 615
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HindIII	AAGCTT	3 cut(s)	1123, 1168, 1213
HinfI	GANTC	9 cut(s)	181, 290, 317, 449, 776, 809, 818, 1055, 1103
HpaII	CCGG	3 cut(s)	532, 672, 928
Hpy166II	GTNNAC	2 cut(s)	829, 952
Hpy188I	TCNGA	7 cut(s)	592, 622, 634, 751, 802, 814, 1060
Hpy188III	TCNNGA	7 cut(s)	321, 392, 659, 860, 908, 928, 1222
Hpy8I	GTNNAC	2 cut(s)	829, 952
Hpy99I	CGWCG	1 cut(s)	690
HpyAV	CCTTC	1 cut(s)	910
HpyCH4III	ACNGT	1 cut(s)	956
HpyCH4IV	ACGT	2 cut(s)	547, 1254
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 464, 931, 1007, 1135, 1144
HpyF3I	CTNAG	3 cut(s)	372, 748, 801
HpySE526I	ACGT	2 cut(s)	547, 1254
Hsp92II	CATG	4 cut(s)	53, 509, 560, 615
Kpn2I	TCCGGA	1 cut(s)	927
Ksp22I	TGATCA	3 cut(s)	553, 862, 979
Kzo9I	GATC	9 cut(s)	137, 251, 403, 432, 553, 592, 751, 862, 979
LmnI	GCTCC	2 cut(s)	930, 1024
Lsp1109I	GCAGC	3 cut(s)	23, 694, 946
LweI	GCATC	2 cut(s)	420, 921
MaeI	CTAG	2 cut(s)	680, 1032
MaeII	ACGT	2 cut(s)	547, 1254
MaeIII	GTNAC	3 cut(s)	45, 350, 559
MalI	GATC	9 cut(s)	139, 253, 405, 434, 555, 594, 753, 864, 981
MboI	GATC	9 cut(s)	137, 251, 403, 432, 553, 592, 751, 862, 979
MflI	RGATCY	2 cut(s)	137, 592
MlyI	GAGTC	2 cut(s)	299, 1112
MmeI	TCCRAC	2 cut(s)	691, 873
MroI	TCCGGA	1 cut(s)	927
MroXI	GAANNNNTTC	1 cut(s)	993
MseI	TTAA	3 cut(s)	1121, 1166, 1211
MslI	CAYNNNNRTG	2 cut(s)	1157, 1202
MspCI	CTTAAG	3 cut(s)	1120, 1165, 1210
MspI	CCGG	3 cut(s)	532, 672, 928
MspR9I	CCNGG	4 cut(s)	539, 672, 735, 1075
Mva1269I	GAATGC	1 cut(s)	586
MvaI	CCWGG	3 cut(s)	539, 735, 1075
MwoI	GCNNNNNNNGC	6 cut(s)	15, 464, 931, 1007, 1135, 1144
NciI	CCSGG	1 cut(s)	672
NdeII	GATC	9 cut(s)	137, 251, 403, 432, 553, 592, 751, 862, 979
NlaIII	CATG	4 cut(s)	53, 509, 560, 615
NlaIV	GGNNCC	2 cut(s)	536, 1263
NmuCI	GTSAC	3 cut(s)	45, 350, 559
NspI	RCATGY	1 cut(s)	53
PaeR7I	CTCGAG	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	490
PciI	ACATGT	1 cut(s)	49
PctI	GAATGC	1 cut(s)	586
PdmI	GAANNNNTTC	1 cut(s)	993
PfeI	GAWTC	7 cut(s)	181, 317, 449, 776, 809, 818, 1055
PinAI	ACCGGT	1 cut(s)	531
PkrI	GCNGC	3 cut(s)	38, 709, 936
PleI	GAGTC	2 cut(s)	298, 1111
PpsI	GAGTC	2 cut(s)	298, 1111
Ppu21I	YACGTR	1 cut(s)	1255
PscI	ACATGT	1 cut(s)	49
Psp1406I	AACGTT	1 cut(s)	547
Psp6I	CCWGG	3 cut(s)	537, 733, 1073
PspGI	CCWGG	3 cut(s)	537, 733, 1073
PspN4I	GGNNCC	2 cut(s)	536, 1263
PspPI	GGNCC	3 cut(s)	534, 698, 731
PstNI	CAGNNNCTG	3 cut(s)	812, 1144, 1189
PsuI	RGATCY	2 cut(s)	137, 592
RsaI	GTAC	2 cut(s)	530, 1100
RsaNI	GTAC	2 cut(s)	529, 1099
RseI	CAYNNNNRTG	2 cut(s)	1157, 1202
SaqAI	TTAA	3 cut(s)	1121, 1166, 1211
SatI	GCNGC	3 cut(s)	37, 708, 935
Sau3AI	GATC	9 cut(s)	137, 251, 403, 432, 553, 592, 751, 862, 979
Sau96I	GGNCC	3 cut(s)	534, 698, 731
SchI	GAGTC	2 cut(s)	299, 1112
ScrFI	CCNGG	4 cut(s)	539, 672, 735, 1075
SfaNI	GCATC	2 cut(s)	420, 921
Sfr274I	CTCGAG	1 cut(s)	392
SinI	GGWCC	1 cut(s)	534
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	2 cut(s)	1157, 1202
SmlI	CTYRAG	4 cut(s)	392, 1120, 1165, 1210
SmoI	CTYRAG	4 cut(s)	392, 1120, 1165, 1210
SseBI	AGGCCT	1 cut(s)	490
SsiI	CCGC	3 cut(s)	188, 574, 1051
SspMI	CTAG	2 cut(s)	680, 1032
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	4 cut(s)	537, 670, 733, 1073
StyI	CCWWGG	1 cut(s)	727
TaaI	ACNGT	1 cut(s)	956
TaiI	ACGT	2 cut(s)	550, 1257
TaqI	TCGA	4 cut(s)	202, 393, 406, 435
TfiI	GAWTC	7 cut(s)	181, 317, 449, 776, 809, 818, 1055
Tru1I	TTAA	3 cut(s)	1121, 1166, 1211
Tru9I	TTAA	3 cut(s)	1121, 1166, 1211
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	3 cut(s)	45, 350, 559
TseI	GCWGC	3 cut(s)	36, 707, 934
Tsp45I	GTSAC	3 cut(s)	45, 350, 559
TspDTI	ATGAA	7 cut(s)	320, 441, 600, 774, 789, 948, 1056
TspGWI	ACGGA	1 cut(s)	433
TspRI	CASTG	1 cut(s)	138
Vha464I	CTTAAG	3 cut(s)	1120, 1165, 1210
VpaK11BI	GGWCC	1 cut(s)	534
XapI	RAATTY	3 cut(s)	70, 992, 1225
XceI	RCATGY	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	392
XmnI	GAANNNNTTC	1 cut(s)	993
XspI	CTAG	2 cut(s)	680, 1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.