Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Reverse (-)

58881289 .. 58890528

Gene Structure 9240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0423400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAGCGTCATCGACATCCTCTCCCGAGTCGACTCAATATGCAGGAAATACGACAAGTATGATATCGAGAAGCAGCGCGAACTCAATGCCTTCGGCGACGATGCCTTCGCTCGCCTCTACGCCCATGTCGAAGACGAAATCCAAGCCCTTCTCCTGAAAGCGGAGAAGTCTGCGATGGAAAGTAATAGGGCTGTTGCGGTGGCCACTAATGTGGAGATTCGTCGGACAAAGGCCCGATTGATGGAAGAACTTCCTAAGCTGCGTAAATTGGCTCAGAAGAAGGTTAAAGGGTTGTCCAAAGAAGAACTAGAAACACGTAATGAGCTGGTTCTTGCATTGCCAGAGAGGATTCAAGAAATACCAGATGGGACAGAAACTGCTCCCAAAAAAGCTGGAATTTGGGCACCTTCCGCCTCTCATAAAAATATCAAGTTTGACTCATCAGATGGAAATTTTGAGAGTGAGTTTTTTCAGCAAACTGAAGAGTCAAATCAATTTCGGCAAGAGTATGAAATGCGGAAGAAGAGACAGGATGAAGGTCTAGATATCATATCAGAAGGATTGGGTACGTTGAAAAATTTGGCCGAAGATATGAATGAGGAAATGGACCGACAGGTCCCGTTAATTGATGAGATAGATACAAAGGTGGATAAGGTCACATCTGACATAAAATCTAATAATGTGAGGCTCAAGGAAAATCTTTACAAGATGAGATCGAGCCGAAATTTCTGCATTGACATTATTCTGCTGTGTATAATACTGGGAATTGCCTTATATCTATACAATTTACTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

KIP1

Protein Analysis

265

Amino Acids

30.56

Weight (kDa)

5.44

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	208 - 258	2e-10	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	614
AccB1I	GGYRCC	1 cut(s)	403
AccI	GTMKAC	1 cut(s)	30
AccII	CGCG	1 cut(s)	78
AciI	CCGC	4 cut(s)	161, 197, 411, 517
AcoI	YGGCCR	2 cut(s)	201, 582
AcsI	RAATTY	4 cut(s)	396, 451, 577, 724
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	2 cut(s)	160, 241
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	353, 574
AleI	CACNNNNGTG	1 cut(s)	209
AluBI	AGCT	3 cut(s)	259, 325, 392
AluI	AGCT	3 cut(s)	259, 325, 392
Alw26I	GTCTC	1 cut(s)	520
AlwNI	CAGNNNCTG	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	3 cut(s)	201, 231, 582
ApeKI	GCWGC	2 cut(s)	73, 259
ApoI	RAATTY	4 cut(s)	396, 451, 577, 724
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
Asp700I	GAANNNNTTC	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	3 cut(s)	232, 607, 616
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	2 cut(s)	607, 616
BaeGI	GKGCMC	1 cut(s)	406
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
BalI	TGGCCA	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	85, 246
BccI	CCATC	4 cut(s)	169, 235, 359, 440
BcgI	CGANNNNNNTGC	4 cut(s)	68, 102, 711, 745
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	2 cut(s)	308, 542
BisI	GCNGC	2 cut(s)	74, 260
BlsI	GCNGC	2 cut(s)	75, 261
Bme18I	GGWCC	2 cut(s)	607, 616
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	3 cut(s)	232, 607, 616
BmiI	GGNNCC	2 cut(s)	405, 618
BmrI	ACTGGG	1 cut(s)	770
BmsI	GCATC	1 cut(s)	91
BmuI	ACTGGG	1 cut(s)	770
BpiI	GAAGAC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	674
BsaAI	YACGTR	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 241
Bse1I	ACTGG	1 cut(s)	765
Bse3DI	GCAATG	1 cut(s)	335
BseGI	GGATG	2 cut(s)	15, 538
BseLI	CCNNNNNNNGG	2 cut(s)	160, 241
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	765
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	2 cut(s)	85, 246
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	3 cut(s)	203, 233, 584
BshNI	GGYRCC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	24
BslFI	GGGAC	2 cut(s)	382, 602
BslI	CCNNNNNNNGG	2 cut(s)	160, 241
BsmAI	GTCTC	1 cut(s)	520
BsmFI	GGGAC	2 cut(s)	382, 602
BsnI	GGCC	3 cut(s)	203, 233, 584
BsoBI	CYCGRG	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	1 cut(s)	713
BspACI	CCGC	4 cut(s)	161, 197, 411, 517
BspANI	GGCC	3 cut(s)	203, 233, 584
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	405, 618
BspT107I	GGYRCC	1 cut(s)	403
BsrDI	GCAATG	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	765
BssMI	GATC	1 cut(s)	713
Bst6I	CTCTTC	2 cut(s)	477, 518
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	3 cut(s)	255, 273, 791
BstF5I	GGATG	2 cut(s)	15, 538
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	1 cut(s)	716
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	1 cut(s)	713
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstSLI	GKGCMC	1 cut(s)	406
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	85, 246
BstV2I	GAAGAC	1 cut(s)	138
BstXI	CCANNNNNNTGG	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	203, 233, 584
BtgZI	GCGATG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	15, 538
Cac8I	GCNNGC	1 cut(s)	112
CaiI	CAGNNNCTG	1 cut(s)	377
CfoI	GCGC	1 cut(s)	78
Cfr13I	GGNCC	3 cut(s)	232, 607, 616
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	1 cut(s)	125
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	3 cut(s)	255, 273, 791
DpnI	GATC	1 cut(s)	715
DpnII	GATC	1 cut(s)	713
DrdI	GACNNNNNNGTC	1 cut(s)	614
DseDI	GACNNNNNNGTC	1 cut(s)	614
EaeI	YGGCCR	2 cut(s)	201, 582
Eam1104I	CTCTTC	2 cut(s)	477, 518
EarI	CTCTTC	2 cut(s)	477, 518
EciI	GGCGGA	1 cut(s)	400
Eco32I	GATATC	2 cut(s)	64, 547
Eco47I	GGWCC	2 cut(s)	607, 616
Eco57I	CTGAAG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRV	GATATC	2 cut(s)	64, 547
FaeI	CATG	1 cut(s)	128
FaqI	GGGAC	2 cut(s)	382, 602
FatI	CATG	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	74, 260
FokI	GGATG	2 cut(s)	2, 545
Fsp4HI	GCNGC	2 cut(s)	74, 260
FspBI	CTAG	2 cut(s)	308, 542
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	2 cut(s)	74, 260
HaeIII	GGCC	3 cut(s)	203, 233, 584
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	6 cut(s)	27, 32, 217, 349, 437, 485
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	5 cut(s)	225, 276, 445, 556, 664
Hpy188III	TCNNGA	5 cut(s)	24, 67, 154, 353, 542
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	2 cut(s)	101, 225
HpyAV	CCTTC	7 cut(s)	100, 115, 158, 274, 417, 530, 551
HpyCH4IV	ACGT	2 cut(s)	316, 569
HpyCH4V	TGCA	3 cut(s)	42, 335, 732
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	3 cut(s)	255, 273, 791
HpySE526I	ACGT	2 cut(s)	316, 569
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	713
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	9 cut(s)	28, 167, 311, 354, 375, 378, 515, 599, 746
Lsp1109I	GCAGC	2 cut(s)	85, 246
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	2 cut(s)	308, 542
MaeII	ACGT	2 cut(s)	316, 569
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	1 cut(s)	715
MboI	GATC	1 cut(s)	713
MboII	GAAGA	8 cut(s)	143, 257, 289, 314, 494, 532, 535, 599
MhlI	GDGCHC	1 cut(s)	406
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	9 cut(s)	266, 396, 451, 494, 577, 624, 724, 765, 784
MluNI	TGGCCA	1 cut(s)	203
MlyI	GAGTC	4 cut(s)	26, 36, 431, 494
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	6 cut(s)	29, 125, 339, 424, 592, 678
Mox20I	TGGCCA	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	2 cut(s)	285, 623
MslI	CAYNNNNRTG	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	203
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	1 cut(s)	713
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	2 cut(s)	405, 618
NmuCI	GTSAC	1 cut(s)	655
OliI	CACNNNNGTG	1 cut(s)	209
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	217, 349
PkrI	GCNGC	2 cut(s)	75, 261
PleI	GAGTC	4 cut(s)	26, 35, 431, 493
PpsI	GAGTC	4 cut(s)	26, 35, 431, 493
Ppu21I	YACGTR	1 cut(s)	317
PpuMI	RGGWCCY	1 cut(s)	616
Psp5II	RGGWCCY	1 cut(s)	616
PspN4I	GGNNCC	2 cut(s)	405, 618
PspPI	GGNCC	3 cut(s)	232, 607, 616
PspPPI	RGGWCCY	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	377
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	1 cut(s)	209
SalI	GTCGAC	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	285, 623
SatI	GCNGC	2 cut(s)	74, 260
Sau3AI	GATC	1 cut(s)	713
Sau96I	GGNCC	3 cut(s)	232, 607, 616
SchI	GAGTC	4 cut(s)	26, 36, 431, 494
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	1 cut(s)	91
SinI	GGWCC	2 cut(s)	607, 616
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
Sse9I	AATT	9 cut(s)	266, 396, 451, 494, 577, 624, 724, 765, 784
SsiI	CCGC	4 cut(s)	161, 197, 411, 517
SspMI	CTAG	2 cut(s)	308, 542
TaiI	ACGT	2 cut(s)	319, 572
TaqI	TCGA	5 cut(s)	12, 30, 66, 129, 716
TaqII	GACCGA	1 cut(s)	624
TasI	AATT	9 cut(s)	266, 396, 451, 494, 577, 624, 724, 765, 784
TfiI	GAWTC	2 cut(s)	217, 349
Tru1I	TTAA	2 cut(s)	285, 623
Tru9I	TTAA	2 cut(s)	285, 623
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	2 cut(s)	73, 259
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	3 cut(s)	525, 549, 608
VpaK11BI	GGWCC	2 cut(s)	607, 616
XapI	RAATTY	4 cut(s)	396, 451, 577, 724
XbaI	TCTAGA	1 cut(s)	541
XmiI	GTMKAC	1 cut(s)	30
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	2 cut(s)	308, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.