Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007546.1

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Reverse (-)

46695 .. 47287

Gene Structure 593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007546.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggaagcaggtagggcaggattgcctattgtcactataaatcatgatggtggtggcggctcaaatgtcaaggatctccatctggaaggcttcaatgtttctgtgggtggacgtgatctaattatggatggtgcagtaacacttggcattatggtaagtttgcttttcaatggattcggatcctctagatttggttttcaaattgataggaatcatttgttaaattgtccaataggatctgatggcacatgtggacttatgggaagaaatgctactggaaaaacaacgtttcttaggcacttggctaagcatgacattgatagcattcgccaagtattgcacgtggagcaagaagtggcaggtgatgatacatcagccttgcgatgtgttgttaaaactgatattgaaagaatccagcttttggaagaagaagatcatatccttgctcaacaggttgaattcttatttactcatgtatttattctaaattcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

164

Amino Acids

17.81

Weight (kDa)

5.36

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
Acc36I	ACCTGC	1 cut(s)	350
AccB7I	CCANNNNNTGG	1 cut(s)	421
AciI	CCGC	1 cut(s)	57
AclI	AACGTT	1 cut(s)	287
AclWI	GGATC	4 cut(s)	81, 174, 187, 244
AcsI	RAATTY	2 cut(s)	458, 487
AcvI	CACGTG	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	421
AflIII	ACRYGT	1 cut(s)	248
AgsI	TTSAA	5 cut(s)	94, 169, 200, 407, 458
AjiI	CACGTC	1 cut(s)	113
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
AlwI	GGATC	4 cut(s)	81, 174, 187, 244
ApoI	RAATTY	2 cut(s)	458, 487
AsuHPI	GGTGA	1 cut(s)	374
BamHI	GGATCC	1 cut(s)	179
BarI	GAAGNNNNNNTAC	2 cut(s)	256, 288
BbrPI	CACGTG	1 cut(s)	343
BccI	CCATC	4 cut(s)	41, 87, 122, 236
BfaI	CTAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	350
BisI	GCNGC	1 cut(s)	58
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	59
BmgBI	CACGTC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	181
Bpu1102I	GCTNAGC	1 cut(s)	306
BsaAI	YACGTR	1 cut(s)	343
BsaBI	GATNNNNATC	3 cut(s)	78, 178, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	280
Bse8I	GATNNNNATC	3 cut(s)	78, 178, 210
BseGI	GGATG	1 cut(s)	133
BseJI	GATNNNNATC	3 cut(s)	78, 178, 210
BseLI	CCNNNNNNNGG	1 cut(s)	421
BseNI	ACTGG	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	421
BsmI	GAATGC	1 cut(s)	324
Bsp143I	GATC	5 cut(s)	73, 115, 179, 236, 433
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	4 cut(s)	81, 174, 187, 244
BsrI	ACTGG	1 cut(s)	280
BssMI	GATC	5 cut(s)	73, 115, 179, 236, 433
BstBAI	YACGTR	1 cut(s)	343
BstDEI	CTNAG	2 cut(s)	293, 306
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	5 cut(s)	76, 118, 182, 239, 436
BstMBI	GATC	5 cut(s)	73, 115, 179, 236, 433
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 346
BstNSI	RCATGY	1 cut(s)	252
BstX2I	RGATCY	3 cut(s)	73, 179, 236
BstYI	RGATCY	3 cut(s)	73, 179, 236
BtgZI	GCGATG	1 cut(s)	397
BtrI	CACGTC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	350
CciI	TCATGA	1 cut(s)	43
CviAII	CATG	4 cut(s)	44, 249, 311, 473
CviJI	RGCY	5 cut(s)	60, 90, 305, 377, 418
CviKI_1	RGCY	5 cut(s)	60, 90, 305, 377, 418
DdeI	CTNAG	2 cut(s)	293, 306
DpnI	GATC	5 cut(s)	75, 117, 181, 238, 435
DpnII	GATC	5 cut(s)	73, 115, 179, 236, 433
Eco72I	CACGTG	1 cut(s)	343
EcoRI	GAATTC	1 cut(s)	458
FaeI	CATG	4 cut(s)	47, 252, 314, 476
FaiI	YATR	9 cut(s)	38, 45, 125, 152, 250, 260, 312, 438, 474
FatI	CATG	4 cut(s)	43, 248, 310, 472
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	1 cut(s)	58
Hin1II	CATG	4 cut(s)	47, 252, 314, 476
HinfI	GANTC	3 cut(s)	174, 211, 411
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	2 cut(s)	110, 254
Hpy188I	TCNGA	2 cut(s)	179, 241
Hpy188III	TCNNGA	4 cut(s)	44, 83, 186, 492
Hpy8I	GTNNAC	2 cut(s)	110, 254
HpyAV	CCTTC	1 cut(s)	80
HpyCH4IV	ACGT	3 cut(s)	112, 287, 342
HpyCH4V	TGCA	2 cut(s)	134, 340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 346
HpyF3I	CTNAG	2 cut(s)	293, 306
HpySE526I	ACGT	3 cut(s)	112, 287, 342
Hsp92II	CATG	4 cut(s)	47, 252, 314, 476
Kzo9I	GATC	5 cut(s)	73, 115, 179, 236, 433
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	6 cut(s)	3, 68, 261, 345, 428, 437
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	3 cut(s)	112, 287, 342
MaeIII	GTNAC	2 cut(s)	31, 136
MalI	GATC	5 cut(s)	75, 117, 181, 238, 435
MboI	GATC	5 cut(s)	73, 115, 179, 236, 433
MboII	GAAGA	4 cut(s)	276, 437, 440, 443
MflI	RGATCY	3 cut(s)	73, 179, 236
MluCI	AATT	5 cut(s)	120, 201, 223, 458, 487
MnlI	CCTC	1 cut(s)	193
MseI	TTAA	2 cut(s)	221, 393
MslI	CAYNNNNRTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	324
MwoI	GCNNNNNNNGC	2 cut(s)	14, 346
NdeII	GATC	5 cut(s)	73, 115, 179, 236, 433
NlaIII	CATG	4 cut(s)	47, 252, 314, 476
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	31
NspI	RCATGY	1 cut(s)	252
PagI	TCATGA	1 cut(s)	43
PaqCI	CACCTGC	1 cut(s)	350
PciI	ACATGT	1 cut(s)	248
PctI	GAATGC	1 cut(s)	324
PfeI	GAWTC	3 cut(s)	174, 211, 411
PflMI	CCANNNNNTGG	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	59
PmaCI	CACGTG	1 cut(s)	343
PmlI	CACGTG	1 cut(s)	343
Ppu21I	YACGTR	1 cut(s)	343
PscI	ACATGT	1 cut(s)	248
Psp1406I	AACGTT	1 cut(s)	287
PspCI	CACGTG	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	181
PsuI	RGATCY	3 cut(s)	73, 179, 236
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	221, 393
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	5 cut(s)	73, 115, 179, 236, 433
SetI	ASST	7 cut(s)	13, 115, 290, 345, 364, 420, 456
SmiMI	CAYNNNNRTG	1 cut(s)	48
Sse9I	AATT	5 cut(s)	120, 201, 223, 458, 487
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	1 cut(s)	186
TaiI	ACGT	3 cut(s)	115, 290, 345
TasI	AATT	5 cut(s)	120, 201, 223, 458, 487
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	3 cut(s)	174, 211, 411
Tru1I	TTAA	2 cut(s)	221, 393
Tru9I	TTAA	2 cut(s)	221, 393
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	421
XapI	RAATTY	2 cut(s)	458, 487
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	1 cut(s)	252
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.