Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Reverse (-)

52677924 .. 52678250

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39634

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGTTAAGCAAGACAATGTTTTGGTACCTAGAGAAACCTCGTGGTTTGGATATTACTATGATGATGCCTTCAACTCAATTCTAGGTCCACAGCAAATTGATCTGTACATTGAAGATTTGATTGGTTTGAGAACATTGGATGAAGTTGGAAGGCTCAAATATATATACATCAGTGTTTCAGGAGGTCATCTTGGAATCTCCAAAAGTGATTTGAAGAAGCTTGTGGTGCCTCACTCAATAAGTTCAGCAATGCCAACAAATGGAAACAGTGAGGTGAACAGACCTCATCAACATGGAGTTGTGGGACGCAATGAGGAGCGCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0002084 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006464 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007275 GO:0007610 GO:0008150 GO:0008152 GO:0008474 GO:0009056 GO:0009057 GO:0009791 GO:0009987 GO:0016043 GO:0016192 GO:0016787 GO:0016788 GO:0016790 GO:0018991 GO:0019098 GO:0019538 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0032504 GO:0035601 GO:0036211 GO:0042157 GO:0042159 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048609 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0071840 GO:0098599 GO:0098657 GO:0098732 GO:0098734 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00062 ko01100 ko01212 ko04142 map00062 map01100 map01212 map04142

Pfam Domains

Protein Families

Palm_thioest

Protein Analysis

108

Amino Acids

12.14

Weight (kDa)

6.04

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Palm_thioest	PF02089	1 - 57	1e-12	Palmitoyl protein thioesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	25
AccB1I	GGYRCC	2 cut(s)	25, 226
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccII	CGCG	1 cut(s)	321
AfaI	GTAC	2 cut(s)	27, 107
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	73, 113, 214
AjuI	GAANNNNNNNTTGG	2 cut(s)	105, 137
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Asp718I	GGTACC	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	86
BanI	GGYRCC	2 cut(s)	25, 226
BauI	CACGAG	1 cut(s)	40
BfaI	CTAG	2 cut(s)	30, 83
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	2 cut(s)	27, 228
BmsI	GCATC	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse3DI	GCAATG	2 cut(s)	255, 316
BseGI	GGATG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	2 cut(s)	255, 316
Bsh1236I	CGCG	1 cut(s)	321
BshNI	GGYRCC	2 cut(s)	25, 226
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	318
Bsp1407I	TGTACA	1 cut(s)	105
Bsp143I	GATC	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	27, 228
BspT107I	GGYRCC	2 cut(s)	25, 226
BsrDI	GCAATG	2 cut(s)	255, 316
BsrGI	TGTACA	1 cut(s)	105
BssMI	GATC	1 cut(s)	100
BssSI	CACGAG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	269
BstAUI	TGTACA	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	321
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstUI	CGCG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	178, 274
CfoI	GCGC	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	86
CseI	GACGC	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	26, 106
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	2 cut(s)	154, 220
CviKI_1	RGCY	2 cut(s)	154, 220
CviQI	GTAC	2 cut(s)	26, 106
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	86
FaeI	CATG	1 cut(s)	296
FaiI	YATR	6 cut(s)	60, 162, 164, 166, 294, 325
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	1 cut(s)	292
FokI	GGATG	1 cut(s)	152
FspBI	CTAG	2 cut(s)	30, 83
GlaI	GCGC	1 cut(s)	320
HgaI	GACGC	1 cut(s)	315
HhaI	GCGC	1 cut(s)	321
Hin1II	CATG	1 cut(s)	296
Hin6I	GCGC	1 cut(s)	319
HinP1I	GCGC	1 cut(s)	319
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	1 cut(s)	195
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	89, 277
Hpy188III	TCNNGA	1 cut(s)	180
Hpy8I	GTNNAC	2 cut(s)	89, 277
HpyAV	CCTTC	2 cut(s)	79, 144
HpyCH4III	ACNGT	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
Hsp92II	CATG	1 cut(s)	296
HspAI	GCGC	1 cut(s)	319
KpnI	GGTACC	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	1 cut(s)	165
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	2 cut(s)	30, 83
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	125, 226
MluCI	AATT	2 cut(s)	78, 96
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	6 cut(s)	49, 176, 240, 265, 294, 307
MseI	TTAA	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	226
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	2 cut(s)	27, 228
PfeI	GAWTC	1 cut(s)	195
PflMI	CCANNNNNTGG	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	27, 228
PspPI	GGNCC	1 cut(s)	86
RsaI	GTAC	2 cut(s)	27, 107
RsaNI	GTAC	2 cut(s)	26, 106
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	86
SetI	ASST	7 cut(s)	31, 41, 88, 187, 222, 276, 286
SfaNI	GCATC	1 cut(s)	55
SgeI	CNNG	9 cut(s)	23, 42, 52, 54, 95, 192, 203, 233, 305
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	2 cut(s)	78, 96
SspMI	CTAG	2 cut(s)	30, 83
TaaI	ACNGT	1 cut(s)	269
TasI	AATT	2 cut(s)	78, 96
TatI	WGTACW	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	2 cut(s)	178, 274
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	178, 274
Van91I	CCANNNNNTGG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	86
XspI	CTAG	2 cut(s)	30, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.