Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Forward (+)

6934501 .. 6935303

Gene Structure 803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCCAAAGAACGACGCGTCTTTGGGATCGGTCTACGAGTTCTTGAAGCAGTGTCGACTCGCCCTAGGAGAGCGCGACATTGAAATCGAACGCCGCTTTGCGCTCGGAGAACTCGAGACCGAGGAAGGTGTGCTTGCCGGTGCCATCCTCGATCTTGAGGATGATGTAGCGAGACGAGTCGAGCATGGTCTTGACAAGAGGTCGCCGATCGACTTTGATGATACGTTAACCGAAAAGTTTGGGAACCATGGTTTGGTTAAAGCCAAACCAACTGTGTGGAGTCTTGCAGCGCCGGTGAGAATGGATGATGGAATGGATGAGGGGCAGGCACCAAAGAAGAAGCAGGAGTTGATTGATGATCCCGTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

123

Amino Acids

13.71

Weight (kDa)

4.64

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	140, 328
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccI	GTMKAC	2 cut(s)	33, 55
AccII	CGCG	2 cut(s)	17, 75
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	2 cut(s)	34, 353
AfiI	CCNNNNNNNGG	1 cut(s)	253
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	46, 83
AhdI	GACNNNNNGTC	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	2 cut(s)	110, 166
AlwI	GGATC	2 cut(s)	34, 353
Ama87I	CYCGRG	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	287
AspA2I	CCTAGG	1 cut(s)	64
AspLEI	GCGC	3 cut(s)	75, 103, 292
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	113
AvrII	CCTAGG	1 cut(s)	64
BanI	GGYRCC	2 cut(s)	140, 328
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	2 cut(s)	152, 302
BcoDI	GTCTC	2 cut(s)	110, 166
BfaI	CTAG	1 cut(s)	65
BfoI	RGCGCY	1 cut(s)	293
BisI	GCNGC	2 cut(s)	94, 288
BlnI	CCTAGG	1 cut(s)	64
BlsI	GCNGC	2 cut(s)	95, 289
BmeRI	GACNNNNNGTC	1 cut(s)	199
BmeT110I	CYCGRG	1 cut(s)	113
BmiI	GGNNCC	3 cut(s)	142, 245, 330
BpuEI	CTTGAG	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	64, 120, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse118I	RCCGGY	2 cut(s)	137, 292
BseDI	CCNNGG	3 cut(s)	64, 120, 247
BseGI	GGATG	4 cut(s)	144, 166, 310, 322
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	299
Bsh1236I	CGCG	2 cut(s)	17, 75
Bsh1285I	CGRYCG	1 cut(s)	210
BshNI	GGYRCC	2 cut(s)	140, 328
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	2 cut(s)	138, 293
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	2 cut(s)	110, 166
BsmBI	CGTCTC	1 cut(s)	166
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	26, 151, 207, 358
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	1 cut(s)	94
BspFNI	CGCG	2 cut(s)	17, 75
BspLI	GGNNCC	3 cut(s)	142, 245, 330
BspPI	GGATC	2 cut(s)	34, 353
BspT107I	GGYRCC	2 cut(s)	140, 328
BspTNI	GGTCTC	1 cut(s)	110
BsrFI	RCCGGY	2 cut(s)	137, 292
BssAI	RCCGGY	2 cut(s)	137, 292
BssECI	CCNNGG	3 cut(s)	64, 120, 247
BssMI	GATC	4 cut(s)	26, 151, 207, 358
BssT1I	CCWWGG	2 cut(s)	64, 247
Bst4CI	ACNGT	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	135, 327
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	4 cut(s)	144, 166, 310, 322
BstFNI	CGCG	2 cut(s)	17, 75
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	3 cut(s)	75, 103, 292
BstKTI	GATC	4 cut(s)	29, 154, 210, 361
BstMAI	GTCTC	2 cut(s)	110, 166
BstMBI	GATC	4 cut(s)	26, 151, 207, 358
BstMCI	CGRYCG	1 cut(s)	210
BstUI	CGCG	2 cut(s)	17, 75
BstV1I	GCAGC	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	4 cut(s)	144, 166, 310, 322
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	56
Cac8I	GCNNGC	2 cut(s)	135, 327
CfoI	GCGC	3 cut(s)	75, 103, 292
Cfr10I	RCCGGY	2 cut(s)	137, 292
CseI	GACGC	2 cut(s)	6, 23
CviAII	CATG	2 cut(s)	185, 248
CviJI	RGCY	1 cut(s)	263
CviKI_1	RGCY	1 cut(s)	263
DpnI	GATC	4 cut(s)	28, 153, 209, 360
DpnII	GATC	4 cut(s)	26, 151, 207, 358
DriI	GACNNNNNGTC	1 cut(s)	199
Eam1105I	GACNNNNNGTC	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	64, 247
Eco31I	GGTCTC	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	113
EcoT14I	CCWWGG	2 cut(s)	64, 247
ErhI	CCWWGG	2 cut(s)	64, 247
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	2 cut(s)	188, 251
FaiI	YATR	2 cut(s)	186, 249
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	2 cut(s)	184, 247
FblI	GTMKAC	2 cut(s)	33, 55
Fnu4HI	GCNGC	2 cut(s)	94, 288
FokI	GGATG	4 cut(s)	131, 173, 317, 329
Fsp4HI	GCNGC	2 cut(s)	94, 288
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	3 cut(s)	74, 102, 291
GluI	GCNGC	2 cut(s)	94, 288
HaeII	RGCGCY	1 cut(s)	293
HapII	CCGG	2 cut(s)	138, 293
HgaI	GACGC	2 cut(s)	6, 23
HhaI	GCGC	3 cut(s)	75, 103, 292
Hin1II	CATG	2 cut(s)	188, 251
Hin6I	GCGC	3 cut(s)	73, 101, 290
HinP1I	GCGC	3 cut(s)	73, 101, 290
HincII	GTYRAC	2 cut(s)	56, 228
HindII	GTYRAC	2 cut(s)	56, 228
HinfI	GANTC	3 cut(s)	57, 177, 280
HpaI	GTTAAC	1 cut(s)	228
HpaII	CCGG	2 cut(s)	138, 293
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	3 cut(s)	34, 56, 228
Hpy188I	TCNGA	2 cut(s)	107, 371
Hpy188III	TCNNGA	4 cut(s)	43, 115, 155, 191
Hpy8I	GTNNAC	3 cut(s)	34, 56, 228
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	1 cut(s)	287
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	188, 251
HspAI	GCGC	3 cut(s)	73, 101, 290
KspAI	GTTAAC	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	26, 151, 207, 358
LpnPI	CCDG	4 cut(s)	151, 306, 311, 329
Lsp1109I	GCAGC	1 cut(s)	299
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	224
MalI	GATC	4 cut(s)	28, 153, 209, 360
MboI	GATC	4 cut(s)	26, 151, 207, 358
MboII	GAAGA	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	369
MluI	ACGCGT	1 cut(s)	15
MlyI	GAGTC	3 cut(s)	51, 186, 289
MnlI	CCTC	5 cut(s)	115, 151, 158, 192, 313
MseI	TTAA	2 cut(s)	227, 258
MspI	CCGG	2 cut(s)	138, 293
MvnI	CGCG	2 cut(s)	17, 75
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	4 cut(s)	26, 151, 207, 358
NlaIII	CATG	2 cut(s)	188, 251
NlaIV	GGNNCC	3 cut(s)	142, 245, 330
PaeR7I	CTCGAG	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	95, 289
Ple19I	CGATCG	1 cut(s)	210
PleI	GAGTC	3 cut(s)	51, 185, 288
PpsI	GAGTC	3 cut(s)	51, 185, 288
PspN4I	GGNNCC	3 cut(s)	142, 245, 330
PvuI	CGATCG	1 cut(s)	210
SalI	GTCGAC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	227, 258
SatI	GCNGC	2 cut(s)	94, 288
Sau3AI	GATC	4 cut(s)	26, 151, 207, 358
SchI	GAGTC	3 cut(s)	51, 186, 289
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	3 cut(s)	130, 203, 227
Sfr274I	CTCGAG	1 cut(s)	113
SgrAI	CRCCGGYG	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	113, 155
SmoI	CTYRAG	2 cut(s)	113, 155
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	65
StyI	CCWWGG	2 cut(s)	64, 247
TaaI	ACNGT	1 cut(s)	274
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	6 cut(s)	55, 87, 114, 150, 180, 210
TaqII	GACCGA	2 cut(s)	19, 134
TauI	GCSGC	1 cut(s)	96
Tru1I	TTAA	2 cut(s)	227, 258
Tru9I	TTAA	2 cut(s)	227, 258
TscAI	CASTG	1 cut(s)	56
TseI	GCWGC	1 cut(s)	287
TspRI	CASTG	1 cut(s)	56
Van91I	CCANNNNNTGG	1 cut(s)	253
XhoI	CTCGAG	1 cut(s)	113
XmaJI	CCTAGG	1 cut(s)	64
XmiI	GTMKAC	2 cut(s)	33, 55
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.