Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Forward (+)

51596450 .. 51599241

Gene Structure 2792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019404

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGGGAGGAGAGTAGTTTTTGGGCGGAGGATACAACAAGCAATTGGTTCGAGGCGTTCGAGGTTAGCTGAACAGCCTGAACTACCTTCAACTCTCATGTACTGCCACGCGGCCTCTCTTTACGTTGTTTACAAATCGCTTTGTGAGTTGACTCGATGCTCCTCGTGCTTTCACGGACGCCGGATATGTGACGTTCCCACCCCAAAATCCAAGCTGATCTCTTTTTTATGTTATGATAAAGGTGATCCTCCTCTCGGTGACGACTCGCCGGTAATCGAATCCCTCCAGATCGTTCAGGTCGATCGGGCGTCGTACAACGCCTCTTTGTCTCTTGACGTACTTGTCGAGATAGGAGAATGCGACATTGAAATCGAACGCTGCTTTGCGCTCGGCGAACCCGAGGCCCATGAAGGCGTGCTTGCTGGTGCCATCCTCGATCTTGAGGACGAAGTAGCGCGACGAGTCGAGCACTGTTTTGACAGAGGTCACTGGAGTTTGGATCCTCCAGTCGGATCTCGCACCGATCCCTGCACAACTTTCTCTGCTCTCGACGAGCTTCTCGTCGCTACTGGCAACGTCACTGACTTTGATGGGTGCCGCTCAGTTTACAGTACGTTAACCGAAAAGTTTGGGAAGCATGATTTGGTTAAAGCCAAACAGGCTGTGAGGAGTCTTGTGGCGCCAGTGAGAATGGGTGATGGAATGGATGAGGGACAGGCACCAAAGAAGAAGCATGAGTTGATTGATAGCCCCGTGCTAATTGAACATGATAAGGCAAAGCTAGATAGGGCAGGATTGCCTGTTGTCACTATAAATCATGATGGTGGTGGCGGCTCAAATGTCAAGGATCTCCATCTGGAAGGCTTCAATGTTTCTGTGGGTGGACGTGATCTAATTATGGATGGTGCGGTAACACTTCGCATTATGGTAAGACTTATTGGAAGAAATGCTACTGGAAAAACAACGTTTCTTAGGCACTTGGCTATGCATGCCATTGATAGCATTCGCCAAGTATTGCACGTGGAGCAAGAAGTGGCAGGTGATGATACATCAGCCTTGCAATGTGTTGTTAAAACTGATATTGAAAGAACCGAGCTTTTGGAAGAAGAAGGTCGTCTCCTTGCTCAACAGAGAGAACTGGAGCTGGAGAAAGAAGCAGAAAAGAGCAATCGAGAAATTGACAAAGATGCCATTGGACTGAGGCTTCAGATGCCAATAGAAAAATTCTTGATAGATGTCTTTTTCTTACTTGTTCTGGTTTTTGTATGTATATTTGTTAAATCAGAGGAGTATAGTTACGATTTTCGTAAACAAGCCTTCTTTGATTTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

445

Amino Acids

49.49

Weight (kDa)

5.35

Isoelectric Point (pI)

54.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1028
AasI	GACNNNNNNGTC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	1028
AccB1I	GGYRCC	4 cut(s)	425, 594, 679, 718
AccBSI	CCGCTC	1 cut(s)	600
AccII	CGCG	2 cut(s)	110, 457
AciI	CCGC	5 cut(s)	25, 110, 598, 831, 908
AclI	AACGTT	1 cut(s)	965
AclWI	GGATC	6 cut(s)	239, 494, 507, 518, 520, 855
AcsI	RAATTY	1 cut(s)	1223
AcuI	CTGAAG	1 cut(s)	1190
AcvI	CACGTG	1 cut(s)	1021
AcyI	GRCGYC	3 cut(s)	178, 308, 680
AfaI	GTAC	4 cut(s)	101, 314, 339, 613
AfiI	CCNNNNNNNGG	2 cut(s)	254, 509
AgsI	TTSAA	5 cut(s)	90, 368, 764, 868, 1085
AjiI	CACGTC	1 cut(s)	887
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AluBI	AGCT	6 cut(s)	68, 214, 556, 781, 1096, 1144
AluI	AGCT	6 cut(s)	68, 214, 556, 781, 1096, 1144
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	2 cut(s)	333, 1121
AlwI	GGATC	6 cut(s)	239, 494, 507, 518, 520, 855
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	2 cut(s)	111, 402
ApeKI	GCWGC	1 cut(s)	378
ApoI	RAATTY	1 cut(s)	1223
AspLEI	GCGC	3 cut(s)	388, 457, 682
AspS9I	GGNCC	1 cut(s)	403
AsuHPI	GGTGA	4 cut(s)	254, 269, 707, 1052
AvaI	CYCGRG	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	499
BanI	GGYRCC	4 cut(s)	425, 594, 679, 718
BarI	GAAGNNNNNNTAC	2 cut(s)	934, 966
BauI	CACGAG	1 cut(s)	163
BbrPI	CACGTG	1 cut(s)	1021
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	6 cut(s)	437, 584, 692, 815, 861, 896
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BciVI	GTATCC	1 cut(s)	24
BcoDI	GTCTC	2 cut(s)	333, 1121
BfaI	CTAG	1 cut(s)	782
BfoI	RGCGCY	1 cut(s)	683
BfuAI	ACCTGC	1 cut(s)	1028
BfuI	GTATCC	1 cut(s)	24
BglI	GCCNNNNNGGC	1 cut(s)	659
BisI	GCNGC	4 cut(s)	111, 379, 598, 832
BlsI	GCNGC	4 cut(s)	112, 380, 599, 833
BmeT110I	CYCGRG	1 cut(s)	398
BmgBI	CACGTC	1 cut(s)	887
BmgT120I	GGNCC	1 cut(s)	403
BmiI	GGNNCC	5 cut(s)	427, 501, 596, 681, 720
BmsI	GCATC	3 cut(s)	146, 1177, 1200
BoxI	GACNNNNGTC	1 cut(s)	483
BpmI	CTGGAG	5 cut(s)	269, 489, 511, 1160, 1166
BpuEI	CTTGAG	1 cut(s)	461
BsaAI	YACGTR	1 cut(s)	1021
BsaBI	GATNNNNATC	1 cut(s)	852
BsaHI	GRCGYC	3 cut(s)	178, 308, 680
BsaJI	CCNNGG	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 509
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	6 cut(s)	494, 506, 574, 683, 958, 1143
Bse3DI	GCAATG	1 cut(s)	1067
Bse8I	GATNNNNATC	1 cut(s)	852
BseDI	CCNNGG	1 cut(s)	399
BseGI	GGATG	3 cut(s)	429, 712, 907
BseJI	GATNNNNATC	1 cut(s)	852
BseLI	CCNNNNNNNGG	2 cut(s)	254, 509
BseMI	GCAATG	1 cut(s)	1067
BseMII	CTCAG	2 cut(s)	615, 1190
BseNI	ACTGG	6 cut(s)	494, 506, 574, 683, 958, 1143
BseRI	GAGGAG	5 cut(s)	22, 151, 240, 682, 1301
BseXI	GCAGC	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	514
Bsh1236I	CGCG	2 cut(s)	110, 457
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	2 cut(s)	113, 404
BshNI	GGYRCC	4 cut(s)	425, 594, 679, 718
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	471
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	181, 269
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	2 cut(s)	254, 509
BsmAI	GTCTC	2 cut(s)	333, 1121
BsmBI	CGTCTC	1 cut(s)	1121
BsmFI	GGGAC	1 cut(s)	726
BsmI	GAATGC	2 cut(s)	362, 1002
BsnI	GGCC	2 cut(s)	113, 404
BsoBI	CYCGRG	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	471
BspACI	CCGC	5 cut(s)	25, 110, 598, 831, 908
BspANI	GGCC	2 cut(s)	113, 404
BspCNI	CTCAG	2 cut(s)	614, 1191
BspFNI	CGCG	2 cut(s)	110, 457
BspHI	TCATGA	1 cut(s)	817
BspLI	GGNNCC	5 cut(s)	427, 501, 596, 681, 720
BspMI	ACCTGC	1 cut(s)	1028
BspPI	GGATC	6 cut(s)	239, 494, 507, 518, 520, 855
BspT107I	GGYRCC	4 cut(s)	425, 594, 679, 718
BsrBI	CCGCTC	1 cut(s)	600
BsrDI	GCAATG	1 cut(s)	1067
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	6 cut(s)	494, 506, 574, 683, 958, 1143
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	399
BssNI	GRCGYC	3 cut(s)	178, 308, 680
BssSI	CACGAG	1 cut(s)	163
Bst2BI	CACGAG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	473, 611
BstACI	GRCGYC	3 cut(s)	178, 308, 680
BstBAI	YACGTR	1 cut(s)	1021
BstC8I	GCNNGC	3 cut(s)	416, 420, 990
BstDEI	CTNAG	3 cut(s)	601, 971, 1199
BstF5I	GGATG	3 cut(s)	429, 712, 907
BstFNI	CGCG	2 cut(s)	110, 457
BstH2I	RGCGCY	1 cut(s)	683
BstHHI	GCGC	3 cut(s)	388, 457, 682
BstMAI	GTCTC	2 cut(s)	333, 1121
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	5 cut(s)	165, 659, 989, 1024, 1210
BstNSI	RCATGY	1 cut(s)	992
BstPAI	GACNNNNGTC	1 cut(s)	483
BstUI	CGCG	2 cut(s)	110, 457
BstV1I	GCAGC	1 cut(s)	365
BstX2I	RGATCY	3 cut(s)	499, 512, 847
BstYI	RGATCY	3 cut(s)	499, 512, 847
BsuI	GTATCC	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	113, 404
BtrI	CACGTC	1 cut(s)	887
BtsCI	GGATG	3 cut(s)	429, 712, 907
BtsIMutI	CAGTG	4 cut(s)	469, 487, 579, 690
BveI	ACCTGC	1 cut(s)	1028
Cac8I	GCNNGC	3 cut(s)	416, 420, 990
CciI	TCATGA	1 cut(s)	817
CfoI	GCGC	3 cut(s)	388, 457, 682
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	403
CseI	GACGC	2 cut(s)	186, 297
Csp6I	GTAC	4 cut(s)	100, 313, 338, 612
CviAII	CATG	7 cut(s)	97, 407, 638, 734, 767, 818, 989
CviQI	GTAC	4 cut(s)	100, 313, 338, 612
DdeI	CTNAG	3 cut(s)	601, 971, 1199
DinI	GGCGCC	1 cut(s)	681
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EciI	GGCGGA	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	1190
Eco72I	CACGTG	1 cut(s)	1021
Eco88I	CYCGRG	1 cut(s)	398
EcoT22I	ATGCAT	1 cut(s)	990
EgeI	GGCGCC	1 cut(s)	681
EheI	GGCGCC	1 cut(s)	681
Esp3I	CGTCTC	1 cut(s)	1121
FaeI	CATG	7 cut(s)	100, 410, 641, 737, 770, 821, 992
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	7 cut(s)	96, 406, 637, 733, 766, 817, 988
Fnu4HI	GCNGC	4 cut(s)	111, 379, 598, 832
FokI	GGATG	3 cut(s)	416, 719, 914
Fsp4HI	GCNGC	4 cut(s)	111, 379, 598, 832
FspBI	CTAG	1 cut(s)	782
GlaI	GCGC	3 cut(s)	387, 456, 681
GluI	GCNGC	4 cut(s)	111, 379, 598, 832
GsuI	CTGGAG	5 cut(s)	269, 489, 511, 1160, 1166
HaeII	RGCGCY	1 cut(s)	683
HaeIII	GGCC	2 cut(s)	113, 404
HapII	CCGG	2 cut(s)	181, 269
HgaI	GACGC	2 cut(s)	186, 297
HhaI	GCGC	3 cut(s)	388, 457, 682
Hin1I	GRCGYC	3 cut(s)	178, 308, 680
Hin1II	CATG	7 cut(s)	100, 410, 641, 737, 770, 821, 992
Hin6I	GCGC	3 cut(s)	386, 455, 680
HinP1I	GCGC	3 cut(s)	386, 455, 680
HincII	GTYRAC	2 cut(s)	150, 618
HindII	GTYRAC	2 cut(s)	150, 618
HinfI	GANTC	5 cut(s)	151, 263, 278, 462, 670
HpaI	GTTAAC	1 cut(s)	618
HpaII	CCGG	2 cut(s)	181, 269
HphI	GGTGA	4 cut(s)	254, 269, 707, 1052
Hpy166II	GTNNAC	6 cut(s)	130, 150, 607, 618, 884, 1310
Hpy188I	TCNGA	3 cut(s)	512, 1209, 1285
Hpy188III	TCNNGA	9 cut(s)	286, 332, 346, 440, 548, 818, 857, 1172, 1228
Hpy8I	GTNNAC	6 cut(s)	130, 150, 607, 618, 884, 1310
Hpy99I	CGWCG	4 cut(s)	313, 462, 554, 566
HpyAV	CCTTC	5 cut(s)	96, 404, 854, 1103, 1327
HpyCH4III	ACNGT	2 cut(s)	473, 611
HpyCH4IV	ACGT	8 cut(s)	123, 192, 336, 576, 614, 886, 965, 1020
HpyCH4V	TGCA	5 cut(s)	531, 988, 1018, 1060, 1330
HpyF10VI	GCNNNNNNNGC	5 cut(s)	165, 659, 989, 1024, 1210
HpyF3I	CTNAG	3 cut(s)	601, 971, 1199
HpySE526I	ACGT	8 cut(s)	123, 192, 336, 576, 614, 886, 965, 1020
Hsp92I	GRCGYC	3 cut(s)	178, 308, 680
Hsp92II	CATG	7 cut(s)	100, 410, 641, 737, 770, 821, 992
HspAI	GCGC	3 cut(s)	386, 455, 680
KasI	GGCGCC	1 cut(s)	679
KspAI	GTTAAC	1 cut(s)	618
LmnI	GCTCC	3 cut(s)	164, 1024, 1141
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	3 cut(s)	146, 1177, 1200
MaeI	CTAG	1 cut(s)	782
MaeII	ACGT	8 cut(s)	123, 192, 336, 576, 614, 886, 965, 1020
MaeIII	GTNAC	7 cut(s)	188, 257, 485, 577, 805, 910, 1295
MbiI	CCGCTC	1 cut(s)	600
MboII	GAAGA	4 cut(s)	739, 954, 1115, 1118
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	3 cut(s)	499, 512, 847
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	5 cut(s)	42, 759, 894, 1176, 1223
Mly113I	GGCGCC	1 cut(s)	680
MlyI	GAGTC	4 cut(s)	145, 257, 471, 679
MmeI	TCCRAC	1 cut(s)	490
Mph1103I	ATGCAT	1 cut(s)	990
MseI	TTAA	5 cut(s)	617, 648, 1071, 1278, 1333
MslI	CAYNNNNRTG	1 cut(s)	822
MspI	CCGG	2 cut(s)	181, 269
MunI	CAATTG	1 cut(s)	42
Mva1269I	GAATGC	2 cut(s)	362, 1002
MvnI	CGCG	2 cut(s)	110, 457
MwoI	GCNNNNNNNGC	5 cut(s)	165, 659, 989, 1024, 1210
NarI	GGCGCC	1 cut(s)	680
NlaIII	CATG	7 cut(s)	100, 410, 641, 737, 770, 821, 992
NlaIV	GGNNCC	5 cut(s)	427, 501, 596, 681, 720
NmeAIII	GCCGAG	1 cut(s)	369
NmuCI	GTSAC	5 cut(s)	188, 257, 485, 577, 805
NsiI	ATGCAT	1 cut(s)	990
NspI	RCATGY	1 cut(s)	992
PaeI	GCATGC	1 cut(s)	992
PagI	TCATGA	1 cut(s)	817
PaqCI	CACCTGC	1 cut(s)	1028
PcsI	WCGNNNNNNNCGW	5 cut(s)	56, 297, 342, 396, 558
PctI	GAATGC	2 cut(s)	362, 1002
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	4 cut(s)	112, 380, 599, 833
Ple19I	CGATCG	1 cut(s)	304
PleI	GAGTC	4 cut(s)	145, 257, 470, 678
PluTI	GGCGCC	1 cut(s)	683
PmaCI	CACGTG	1 cut(s)	1021
PmlI	CACGTG	1 cut(s)	1021
PpsI	GAGTC	4 cut(s)	145, 257, 470, 678
Ppu21I	YACGTR	1 cut(s)	1021
PshAI	GACNNNNGTC	1 cut(s)	483
Psp1406I	AACGTT	1 cut(s)	965
PspCI	CACGTG	1 cut(s)	1021
PspN4I	GGNNCC	5 cut(s)	427, 501, 596, 681, 720
PspPI	GGNCC	1 cut(s)	403
PsuI	RGATCY	3 cut(s)	499, 512, 847
PvuI	CGATCG	1 cut(s)	304
RsaI	GTAC	4 cut(s)	101, 314, 339, 613
RsaNI	GTAC	4 cut(s)	100, 313, 338, 612
RseI	CAYNNNNRTG	1 cut(s)	822
SaqAI	TTAA	5 cut(s)	617, 648, 1071, 1278, 1333
SatI	GCNGC	4 cut(s)	111, 379, 598, 832
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	4 cut(s)	145, 257, 471, 679
SduI	GDGCHC	1 cut(s)	471
SfaNI	GCATC	3 cut(s)	146, 1177, 1200
SfoI	GGCGCC	1 cut(s)	681
SmiMI	CAYNNNNRTG	1 cut(s)	822
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
SphI	GCATGC	1 cut(s)	992
Sse9I	AATT	5 cut(s)	42, 759, 894, 1176, 1223
SsiI	CCGC	5 cut(s)	25, 110, 598, 831, 908
SspDI	GGCGCC	1 cut(s)	679
SspMI	CTAG	1 cut(s)	782
TaaI	ACNGT	2 cut(s)	473, 611
TaiI	ACGT	8 cut(s)	126, 195, 339, 579, 617, 889, 968, 1023
TasI	AATT	5 cut(s)	42, 759, 894, 1176, 1223
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	3 cut(s)	113, 600, 834
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	5 cut(s)	617, 648, 1071, 1278, 1333
Tru9I	TTAA	5 cut(s)	617, 648, 1071, 1278, 1333
TscAI	CASTG	4 cut(s)	476, 494, 586, 690
TseFI	GTSAC	5 cut(s)	188, 257, 485, 577, 805
TseI	GCWGC	1 cut(s)	378
Tsp45I	GTSAC	5 cut(s)	188, 257, 485, 577, 805
TspDTI	ATGAA	1 cut(s)	423
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	4 cut(s)	476, 494, 586, 690
XapI	RAATTY	1 cut(s)	1223
XceI	RCATGY	1 cut(s)	992
XspI	CTAG	1 cut(s)	782
Zsp2I	ATGCAT	1 cut(s)	990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.