Rorug01G0046700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003705
Physical Location & Seq
Reverse (-)
7809582 .. 7810578
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0046700.1

Sequence Viewer

Length: 738 bp
ATGGCTTCTCTTGAGGAAGTTACTGCAAGCTTCCAAGAGTTTCTTGCACTAGCAGGAGATGACGTGATTGATATCACGATGCTGTCACTTGGGAAACCTAGAAGAAATTGTCAAGCCTACCTGTTGGGAAGATCCCTCTCTCCAAAGCCTGTGGAGATCAATGACCTGCGTTGTCACTTTCGTAGGATTTGGGTGTTGGTGATTAGAGGAGGGCCTTGGAATTATGCTCGAGCTCCAATGCTGTTGATAGAATATGATGGTGTGACACCAATTGAAAAGATCCCTCTTTATCTACTCTACTATTGGCTGAAAATTGATGATGGGGTTGAAGATGTGATTCAATACCACTTTGACAATCTCTTTGGAAGGTGTGAGGATTGCTTGTTGATCTTCCATCCTACAGGTTCATGTACTGCTGCAAGAAAAAATAAAAGTATGTCTGCGGTGCAAACTCATTTACCAAAGATTGATTTTCTGAATAGGAATTTTCTGGTTGATGGCATGCCATTTACTTTTAAATCCTTTATTCCAACTGCTGTTACTATATCATCTTTTGTGAATCTGAAAGACACAGGGGTTCGTAAGGCCAAAAGATCTATTGTGCTTCGCGAGCCTGACATTAGGAAAGACAATGGTTTAGCTATTGTGCCTGTTGAAGAGCAGATGCCTAGCAAGAGAGGTAAACGTATGCACTCCTACCCCTTCACCTCAGAAAGCACAAACCCCAGTTCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.88

Weight (kDa)

8.54

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 174
AccII CGCG 1 cut(s) 609
AciI CCGC 1 cut(s) 443
AclWI GGATC 2 cut(s) 126, 274
AcsI RAATTY 1 cut(s) 484
AfaI GTAC 1 cut(s) 412
AgsI TTSAA 4 cut(s) 275, 329, 341, 656
AjiI CACGTC 1 cut(s) 64
AluBI AGCT 3 cut(s) 30, 233, 641
AluI AGCT 3 cut(s) 30, 233, 641
Alw21I GWGCWC 1 cut(s) 235
AlwI GGATC 2 cut(s) 126, 274
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 2 cut(s) 212, 585
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 484
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 211, 697
AvaI CYCGRG 1 cut(s) 228
BanII GRGCYC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 235
BbvI GCAGC 1 cut(s) 403
BccI CCATC 4 cut(s) 251, 314, 402, 491
BfaI CTAG 3 cut(s) 50, 99, 669
BfmI CTRYAG 1 cut(s) 399
BfuAI ACCTGC 1 cut(s) 174
BglII AGATCT 1 cut(s) 593
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
BmeT110I CYCGRG 1 cut(s) 228
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 212
BmrI ACTGGG 1 cut(s) 720
BmsI GCATC 2 cut(s) 69, 654
BmuI ACTGGG 1 cut(s) 720
BpuEI CTTGAG 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 215
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bse1I ACTGG 1 cut(s) 726
Bse8I GATNNNNATC 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 1 cut(s) 394
BseJI GATNNNNATC 1 cut(s) 71
BseMII CTCAG 1 cut(s) 723
BseNI ACTGG 1 cut(s) 726
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 1 cut(s) 403
Bsh1236I CGCG 1 cut(s) 609
BshFI GGCC 2 cut(s) 214, 587
BsiHKAI GWGCWC 1 cut(s) 235
BsiHKCI CYCGRG 1 cut(s) 228
BsnI GGCC 2 cut(s) 214, 587
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 5 cut(s) 131, 156, 279, 387, 593
Bsp68I TCGCGA 1 cut(s) 609
BspACI CCGC 1 cut(s) 443
BspANI GGCC 2 cut(s) 214, 587
BspCNI CTCAG 1 cut(s) 722
BspFNI CGCG 1 cut(s) 609
BspMI ACCTGC 1 cut(s) 174
BspPI GGATC 2 cut(s) 126, 274
BspQI GCTCTTC 1 cut(s) 651
BsrI ACTGG 1 cut(s) 726
BssECI CCNNGG 1 cut(s) 215
BssMI GATC 5 cut(s) 131, 156, 279, 387, 593
BssT1I CCWWGG 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 651
BstC8I GCNNGC 3 cut(s) 28, 503, 611
BstDEI CTNAG 1 cut(s) 709
BstF5I GGATG 1 cut(s) 394
BstFNI CGCG 1 cut(s) 609
BstKTI GATC 5 cut(s) 134, 159, 282, 390, 596
BstMBI GATC 5 cut(s) 131, 156, 279, 387, 593
BstMWI GCNNNNNNNGC 1 cut(s) 610
BstNSI RCATGY 1 cut(s) 505
BstSFI CTRYAG 1 cut(s) 399
BstUI CGCG 1 cut(s) 609
BstV1I GCAGC 1 cut(s) 403
BstX2I RGATCY 3 cut(s) 131, 279, 593
BstYI RGATCY 3 cut(s) 131, 279, 593
BsuRI GGCC 2 cut(s) 214, 587
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 394
BtuMI TCGCGA 1 cut(s) 609
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 3 cut(s) 28, 503, 611
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 411
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 2 cut(s) 408, 502
CviQI GTAC 1 cut(s) 411
DdeI CTNAG 1 cut(s) 709
DpnI GATC 5 cut(s) 133, 158, 281, 389, 595
DpnII GATC 5 cut(s) 131, 156, 279, 387, 593
DraI TTTAAA 1 cut(s) 517
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
Ecl136II GAGCTC 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 235
Eco32I GATATC 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 228
EcoICRI GAGCTC 1 cut(s) 233
EcoO109I RGGNCCY 1 cut(s) 212
EcoRV GATATC 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 2 cut(s) 411, 505
FaiI YATR 7 cut(s) 225, 255, 409, 437, 503, 545, 689
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 2 cut(s) 407, 501
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 1 cut(s) 381
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 3 cut(s) 50, 99, 669
GluI GCNGC 1 cut(s) 417
HaeIII GGCC 2 cut(s) 214, 587
Hin1II CATG 2 cut(s) 411, 505
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 2 cut(s) 337, 559
HphI GGTGA 2 cut(s) 211, 697
Hpy166II GTNNAC 1 cut(s) 683
Hpy188I TCNGA 4 cut(s) 477, 564, 712, 733
Hpy188III TCNNGA 3 cut(s) 11, 76, 608
Hpy8I GTNNAC 1 cut(s) 683
HpyAV CCTTC 2 cut(s) 360, 712
HpyCH4IV ACGT 2 cut(s) 63, 685
HpyCH4V TGCA 5 cut(s) 26, 47, 419, 448, 691
HpyF10VI GCNNNNNNNGC 1 cut(s) 610
HpyF3I CTNAG 1 cut(s) 709
HpySE526I ACGT 2 cut(s) 63, 685
Hsp92II CATG 2 cut(s) 411, 505
Kzo9I GATC 5 cut(s) 131, 156, 279, 387, 593
LguI GCTCTTC 1 cut(s) 651
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 9 cut(s) 39, 134, 162, 179, 387, 476, 558, 627, 663
Lsp1109I GCAGC 1 cut(s) 403
LweI GCATC 2 cut(s) 69, 654
MaeI CTAG 3 cut(s) 50, 99, 669
MaeII ACGT 2 cut(s) 63, 685
MaeIII GTNAC 5 cut(s) 19, 84, 173, 262, 538
MalI GATC 5 cut(s) 133, 158, 281, 389, 595
MboI GATC 5 cut(s) 131, 156, 279, 387, 593
MboII GAAGA 5 cut(s) 114, 141, 341, 382, 668
MfeI CAATTG 1 cut(s) 270
MflI RGATCY 3 cut(s) 131, 279, 593
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 5 cut(s) 106, 220, 270, 312, 484
MmeI TCCRAC 1 cut(s) 554
MnlI CCTC 8 cut(s) 7, 146, 200, 203, 294, 367, 671, 718
MseI TTAA 1 cut(s) 516
MunI CAATTG 1 cut(s) 270
MvnI CGCG 1 cut(s) 609
MwoI GCNNNNNNNGC 1 cut(s) 610
NdeII GATC 5 cut(s) 131, 156, 279, 387, 593
NlaIII CATG 2 cut(s) 411, 505
NmuCI GTSAC 3 cut(s) 84, 173, 262
NruI TCGCGA 1 cut(s) 609
NspI RCATGY 1 cut(s) 505
PaeI GCATGC 1 cut(s) 505
PaeR7I CTCGAG 1 cut(s) 228
PciSI GCTCTTC 1 cut(s) 651
PfeI GAWTC 2 cut(s) 337, 559
PkrI GCNGC 1 cut(s) 418
Psp124BI GAGCTC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 212
PspXI VCTCGAGB 1 cut(s) 228
PsuI RGATCY 3 cut(s) 131, 279, 593
RruI TCGCGA 1 cut(s) 609
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
SacI GAGCTC 1 cut(s) 235
SapI GCTCTTC 1 cut(s) 651
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 1 cut(s) 417
Sau3AI GATC 5 cut(s) 131, 156, 279, 387, 593
Sau96I GGNCC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 235
SfaNI GCATC 2 cut(s) 69, 654
SfcI CTRYAG 1 cut(s) 399
Sfr274I CTCGAG 1 cut(s) 228
SlaI CTCGAG 1 cut(s) 228
SmlI CTYRAG 2 cut(s) 11, 228
SmoI CTYRAG 2 cut(s) 11, 228
SphI GCATGC 1 cut(s) 505
Sse9I AATT 5 cut(s) 106, 220, 270, 312, 484
SsiI CCGC 1 cut(s) 443
SspMI CTAG 3 cut(s) 50, 99, 669
SstI GAGCTC 1 cut(s) 235
StyI CCWWGG 1 cut(s) 215
TaiI ACGT 2 cut(s) 66, 688
TaqI TCGA 1 cut(s) 229
TasI AATT 5 cut(s) 106, 220, 270, 312, 484
TatI WGTACW 1 cut(s) 410
TfiI GAWTC 2 cut(s) 337, 559
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TseFI GTSAC 3 cut(s) 84, 173, 262
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 3 cut(s) 84, 173, 262
TspDTI ATGAA 1 cut(s) 396
XapI RAATTY 1 cut(s) 484
XceI RCATGY 1 cut(s) 505
XhoI CTCGAG 1 cut(s) 228
XspI CTAG 3 cut(s) 50, 99, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.