Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Reverse (-)

34633404 .. 34633754

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG263400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGATTGGAGAGCACAATGTTGAAATAGAACCCCTCGTTGCGCTCGGAAAATCTGAGGCCGATGAAGGCGTGCTTGTCGGTGCCGTCCTCGATCTTAAGGACGAAGTAGCTCGACGAGTCGAGCACGGTCTCGATGGAGGTCACTGGAGTTCAGATCCTCAAGTCAGATCTCGCACTGGTCGATTGATTTGTGTGATTGCGGTGGTGAAGATGTTGACAAAGTTTGAGAAGAAGAGTAATAAGAGTGAAGGGACTGCGCTTCCATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

9.68

Weight (kDa)

5.88

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	80
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	1 cut(s)	149
AflII	CTTAAG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	23
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw21I	GWGCWC	2 cut(s)	15, 126
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	57
AspLEI	GCGC	2 cut(s)	43, 259
AsuHPI	GGTGA	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	80
Bbv12I	GWGCWC	2 cut(s)	15, 126
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	134
BfrI	CTTAAG	1 cut(s)	95
BglII	AGATCT	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	82
BpmI	CTGGAG	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	134
Bse1I	ACTGG	2 cut(s)	149, 181
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	149, 181
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	80
BsiHKAI	GWGCWC	2 cut(s)	15, 126
BslFI	GGGAC	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	15, 126
Bsp143I	GATC	3 cut(s)	91, 154, 167
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	80
BspTI	CTTAAG	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	149, 181
BssMI	GATC	3 cut(s)	91, 154, 167
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	1 cut(s)	227
BstAFI	CTTAAG	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	54
BstHHI	GCGC	2 cut(s)	43, 259
BstKTI	GATC	3 cut(s)	94, 157, 170
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	3 cut(s)	91, 154, 167
BstX2I	RGATCY	2 cut(s)	154, 167
BstYI	RGATCY	2 cut(s)	154, 167
BsuRI	GGCC	1 cut(s)	59
BtsIMutI	CAGTG	2 cut(s)	142, 174
Cac8I	GCNNGC	1 cut(s)	71
CfoI	GCGC	2 cut(s)	43, 259
CviJI	RGCY	2 cut(s)	59, 110
CviKI_1	RGCY	2 cut(s)	59, 110
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	3 cut(s)	93, 156, 169
DpnII	GATC	3 cut(s)	91, 154, 167
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	134
FaiI	YATR	1 cut(s)	265
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	1 cut(s)	265
GlaI	GCGC	2 cut(s)	42, 258
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	59
HhaI	GCGC	2 cut(s)	43, 259
Hin6I	GCGC	2 cut(s)	41, 257
HinP1I	GCGC	2 cut(s)	41, 257
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	117
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	4 cut(s)	47, 55, 154, 167
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	117
HpyAV	CCTTC	2 cut(s)	59, 242
HpyCH4III	ACNGT	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	54
HspAI	GCGC	2 cut(s)	41, 257
Kzo9I	GATC	3 cut(s)	91, 154, 167
LpnPI	CCDG	2 cut(s)	130, 162
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	3 cut(s)	93, 156, 169
MboI	GATC	3 cut(s)	91, 154, 167
MboII	GAAGA	3 cut(s)	220, 241, 244
MflI	RGATCY	2 cut(s)	154, 167
MhlI	GDGCHC	2 cut(s)	15, 126
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	5 cut(s)	44, 49, 98, 131, 168
MseI	TTAA	1 cut(s)	96
MspCI	CTTAAG	1 cut(s)	95
NdeII	GATC	3 cut(s)	91, 154, 167
NlaIV	GGNNCC	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	154, 167
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	3 cut(s)	91, 154, 167
SchI	GAGTC	1 cut(s)	126
SduI	GDGCHC	2 cut(s)	15, 126
SetI	ASST	2 cut(s)	112, 142
SmlI	CTYRAG	2 cut(s)	95, 159
SmoI	CTYRAG	2 cut(s)	95, 159
SsiI	CCGC	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	5 cut(s)	90, 112, 120, 132, 181
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	2 cut(s)	149, 181
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	149, 181
Vha464I	CTTAAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.