Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Forward (+)

14834816 .. 14835662

Gene Structure 847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001375

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAGTTCCGACTCGCCGGTAATCGGATCCCTCCATATCGTTCAGGTCGATCGGGCATCGTACGACGCCTCTTTGTCTCTTGATGTACTTATCGAGATAGGAGAGCCCAACATTGAAATCGAACGCTGCCTTGTGCTCGGCGAATGCGAAGCCGATAAAGGTGTGCTCAGTCTTGACAGAGGTCGCTGGAGTTCGAATCCTCCAATTGGATCTCGCACCAGTCCTTGCACAACCTTCTCCGCTCTCGGCGAGCTTCTCTACGTTAACCGAAAGTTTGGGAAGCATGGTTTGGTTAAAGCCAAACCAACTGTTCGGAGTCTTGCAGCGCCAGTGAGAATAGATGATCGAATGGATGAGGGGCAAGCACCAAAGAAGAAGCAGGAGTTGATTGATAACCGCATGCTAACTGAACGTGATAAGGCAAAGCTAGATAGGCGAAAGTCAAAAGAGGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

153

Amino Acids

16.82

Weight (kDa)

7.7

Isoelectric Point (pI)

62.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	242
AciI	CCGC	2 cut(s)	240, 397
AclWI	GGATC	3 cut(s)	21, 34, 217
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	2 cut(s)	62, 87
AfiI	CCNNNNNNNGG	2 cut(s)	23, 206
AgsI	TTSAA	1 cut(s)	116
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	2 cut(s)	253, 427
AluI	AGCT	2 cut(s)	253, 427
Alw21I	GWGCWC	2 cut(s)	138, 168
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	3 cut(s)	21, 34, 217
ApeKI	GCWGC	2 cut(s)	126, 323
AspLEI	GCGC	1 cut(s)	328
AsuII	TTCGAA	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	108
Bbv12I	GWGCWC	2 cut(s)	138, 168
BbvI	GCAGC	2 cut(s)	113, 335
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	428
BfoI	RGCGCY	1 cut(s)	329
BisI	GCNGC	2 cut(s)	127, 324
BlsI	GCNGC	2 cut(s)	128, 325
BmiI	GGNNCC	1 cut(s)	28
BmsI	GCATC	1 cut(s)	65
BoxI	GACNNNNGTC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	208
Bpu14I	TTCGAA	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 206
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	219, 329
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	23, 206
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	2 cut(s)	219, 329
BseXI	GCAGC	2 cut(s)	113, 335
Bsh1285I	CGRYCG	1 cut(s)	52
BsiEI	CGRYCG	1 cut(s)	52
BsiHKAI	GWGCWC	2 cut(s)	138, 168
BsiSI	CCGG	1 cut(s)	17
BsiWI	CGTACG	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	23, 206
BsmAI	GTCTC	1 cut(s)	81
BsmI	GAATGC	1 cut(s)	149
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	3 cut(s)	108, 138, 168
Bsp143I	GATC	4 cut(s)	26, 49, 209, 343
BspACI	CCGC	2 cut(s)	240, 397
BspCNI	CTCAG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	3 cut(s)	21, 34, 217
BspT104I	TTCGAA	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	219, 329
BssAI	RCCGGY	1 cut(s)	16
BssMI	GATC	4 cut(s)	26, 49, 209, 343
BssNI	GRCGYC	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	310
BstACI	GRCGYC	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	251, 363, 401
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	358
BstH2I	RGCGCY	1 cut(s)	329
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	4 cut(s)	29, 52, 212, 346
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	4 cut(s)	26, 49, 209, 343
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstNSI	RCATGY	1 cut(s)	403
BstPAI	GACNNNNGTC	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	113, 335
BstX2I	RGATCY	2 cut(s)	26, 209
BstYI	RGATCY	2 cut(s)	26, 209
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	3 cut(s)	251, 363, 401
CfoI	GCGC	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	16
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	61, 86
CviAII	CATG	2 cut(s)	284, 400
CviJI	RGCY	5 cut(s)	106, 152, 253, 299, 427
CviKI_1	RGCY	5 cut(s)	106, 152, 253, 299, 427
CviQI	GTAC	2 cut(s)	61, 86
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	4 cut(s)	28, 51, 211, 345
DpnII	GATC	4 cut(s)	26, 49, 209, 343
Eco24I	GRGCYC	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	108
FaeI	CATG	2 cut(s)	287, 403
FaiI	YATR	3 cut(s)	36, 285, 401
FatI	CATG	2 cut(s)	283, 399
Fnu4HI	GCNGC	2 cut(s)	127, 324
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	2 cut(s)	127, 324
FspBI	CTAG	1 cut(s)	428
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	2 cut(s)	127, 324
GsuI	CTGGAG	1 cut(s)	208
HaeII	RGCGCY	1 cut(s)	329
HapII	CCGG	1 cut(s)	17
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	328
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	287, 403
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	3 cut(s)	11, 196, 316
HpaI	GTTAAC	1 cut(s)	265
HpaII	CCGG	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	3 cut(s)	10, 26, 315
Hpy188III	TCNNGA	3 cut(s)	80, 94, 173
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	2 cut(s)	244, 446
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	2 cut(s)	261, 412
HpyCH4V	TGCA	2 cut(s)	228, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	2 cut(s)	261, 412
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	287, 403
HspAI	GCGC	1 cut(s)	326
KspAI	GTTAAC	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	26, 49, 209, 343
LpnPI	CCDG	6 cut(s)	29, 30, 172, 232, 342, 365
Lsp1109I	GCAGC	2 cut(s)	113, 335
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	428
MaeII	ACGT	2 cut(s)	261, 412
MalI	GATC	4 cut(s)	28, 51, 211, 345
MbiI	CCGCTC	1 cut(s)	242
MboI	GATC	4 cut(s)	26, 49, 209, 343
MboII	GAAGA	1 cut(s)	385
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	2 cut(s)	26, 209
MhlI	GDGCHC	3 cut(s)	108, 138, 168
MluCI	AATT	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	5, 325
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	6 cut(s)	41, 79, 173, 210, 349, 442
MseI	TTAA	2 cut(s)	264, 294
MspI	CCGG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	433
NdeII	GATC	4 cut(s)	26, 49, 209, 343
NlaIII	CATG	2 cut(s)	287, 403
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	2 cut(s)	117, 225
NspI	RCATGY	1 cut(s)	403
NspV	TTCGAA	1 cut(s)	194
PaeI	GCATGC	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 144
PctI	GAATGC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	196
Pfl23II	CGTACG	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	128, 325
Ple19I	CGATCG	1 cut(s)	52
PleI	GAGTC	2 cut(s)	5, 324
PpsI	GAGTC	2 cut(s)	5, 324
PshAI	GACNNNNGTC	1 cut(s)	180
PspLI	CGTACG	1 cut(s)	60
PspN4I	GGNNCC	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	26, 209
PvuI	CGATCG	1 cut(s)	52
RsaI	GTAC	2 cut(s)	62, 87
RsaNI	GTAC	2 cut(s)	61, 86
SaqAI	TTAA	2 cut(s)	264, 294
SatI	GCNGC	2 cut(s)	127, 324
Sau3AI	GATC	4 cut(s)	26, 49, 209, 343
SchI	GAGTC	2 cut(s)	5, 325
SduI	GDGCHC	3 cut(s)	108, 138, 168
SetI	ASST	8 cut(s)	48, 163, 184, 236, 255, 264, 415, 429
SfaNI	GCATC	1 cut(s)	65
SfuI	TTCGAA	1 cut(s)	194
SphI	GCATGC	1 cut(s)	403
Sse9I	AATT	1 cut(s)	204
SsiI	CCGC	2 cut(s)	240, 397
SspMI	CTAG	1 cut(s)	428
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	2 cut(s)	264, 415
TaqI	TCGA	5 cut(s)	48, 93, 120, 194, 346
TasI	AATT	1 cut(s)	204
TatI	WGTACW	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	2 cut(s)	264, 294
Tru9I	TTAA	2 cut(s)	264, 294
TscAI	CASTG	1 cut(s)	336
TseI	GCWGC	2 cut(s)	126, 323
TspRI	CASTG	1 cut(s)	336
XceI	RCATGY	1 cut(s)	403
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.