Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Reverse (-)

64963787 .. 64976986

Gene Structure 13200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG447600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCACCAAAGTATGAAGCAATATGTGCTGCAATGGTGGTTATGGTCGATCGGGCGTCGTACGACGCCTCTTTGTCTCTTGACGTACTTGTCGAGATAGGAGAACGCGACGTTGAAATTGAACGCCACTTTGCGCTCGGCGAACCCGAGGCCGATGAAGGCTTGCTTGCTGGTGCCATCCTCGATCTTGAGGACGAAGTAGCGCGACGAGTCGAGCACGGTCTTGACGGGGGTCACTGGAGTTTGGATCCTCCAGTCGGATCTCGCACCGGTCCCTGCACAACCTTCTCCGCTCTCGGCGAGCTTCTCGTCGCTACTGGCAACGTCACTGACTTTGATGGGTGCCGCTCGCTTAGTTTCTACAATAAGCTTATTGCATTGGAACTGTGGTGCTTAGTTTTGTTAAATACGTTAACCGAAAAGTTTGGGAAGCATGATTTGGTTAAAGCCAAACAGGCTGTGCGGAGTCTTGTGGCGTCAGTGAGAATGGATGATGGAATGGATGAGGGACATGCACCAAAGAAGAAGCAGGAGTTGATTGATAGCCCCGTGCTAACTGAACGTGATAAGGCAAAGCTAGATAGGGGCGTGACAGCAGGATTGCCTGTTGTCACTATAAATAATGATGGTGGTGGCAGCTCAAATGTCAAGGATCTCCATCTGGAAGGCTTCAATGTTTCTGTGGGTGGACGTGATCTAATTATGGATGGTGCAGTAAGACTTGGCATTATGGACTTATTGGAAGAAATGCTACTGGAAAAACAACGTTTCTTAGGCACTTGGCTATGCATGCCATTGATAGCATTCGCCAAGTATTGCACGTGGAGCAAGAAGTGGCAGGTACCTGAATTCATCATATGTAAAGAACATGATAATACCCACGGAAACATTCAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

299

Amino Acids

32.78

Weight (kDa)

4.92

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	829
Acc65I	GGTACC	1 cut(s)	841
AccB1I	GGYRCC	4 cut(s)	4, 173, 342, 841
AccBSI	CCGCTC	2 cut(s)	293, 348
AccII	CGCG	2 cut(s)	108, 205
AciI	CCGC	3 cut(s)	291, 346, 463
AclI	AACGTT	1 cut(s)	766
AclWI	GGATC	4 cut(s)	242, 255, 268, 660
AcsI	RAATTY	1 cut(s)	848
AcvI	CACGTG	1 cut(s)	822
AcyI	GRCGYC	3 cut(s)	56, 66, 476
AfaI	GTAC	3 cut(s)	62, 87, 843
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgeI	ACCGGT	1 cut(s)	269
AgsI	TTSAA	4 cut(s)	116, 122, 673, 893
AjiI	CACGTC	1 cut(s)	692
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	4 cut(s)	304, 370, 577, 639
AluI	AGCT	4 cut(s)	304, 370, 577, 639
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	4 cut(s)	242, 255, 268, 660
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	29, 636
ApoI	RAATTY	1 cut(s)	848
AsiGI	ACCGGT	1 cut(s)	269
Asp718I	GGTACC	1 cut(s)	841
AspLEI	GCGC	2 cut(s)	136, 205
AspS9I	GGNCC	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	247
BanI	GGYRCC	4 cut(s)	4, 173, 342, 841
BarI	GAAGNNNNNNTAC	2 cut(s)	735, 767
BbrPI	CACGTG	1 cut(s)	822
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	16, 648
BccI	CCATC	6 cut(s)	185, 332, 488, 620, 666, 701
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	578
BfuAI	ACCTGC	1 cut(s)	829
BglI	GCCNNNNNGGC	1 cut(s)	455
BisI	GCNGC	3 cut(s)	30, 346, 637
BlsI	GCNGC	3 cut(s)	31, 347, 638
Bme18I	GGWCC	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	6 cut(s)	6, 175, 249, 274, 344, 843
BoxI	GACNNNNGTC	1 cut(s)	231
BpmI	CTGGAG	2 cut(s)	237, 259
BpuEI	CTTGAG	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	822
BsaBI	GATNNNNATC	1 cut(s)	657
BsaHI	GRCGYC	3 cut(s)	56, 66, 476
BsaJI	CCNNGG	2 cut(s)	147, 880
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	4 cut(s)	242, 254, 322, 759
Bse3DI	GCAATG	1 cut(s)	39
Bse8I	GATNNNNATC	1 cut(s)	657
BseDI	CCNNGG	2 cut(s)	147, 880
BseGI	GGATG	4 cut(s)	177, 496, 508, 712
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	39
BseNI	ACTGG	4 cut(s)	242, 254, 322, 759
BseXI	GCAGC	2 cut(s)	16, 648
BsgI	GTGCAG	2 cut(s)	262, 732
Bsh1236I	CGCG	2 cut(s)	108, 205
Bsh1285I	CGRYCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	4 cut(s)	4, 173, 342, 841
BshTI	ACCGGT	1 cut(s)	269
BsiEI	CGRYCG	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	270
BsiWI	CGTACG	1 cut(s)	60
BslFI	GGGAC	2 cut(s)	258, 522
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	81
BsmFI	GGGAC	2 cut(s)	258, 522
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	6 cut(s)	49, 184, 247, 260, 652, 694
BspACI	CCGC	3 cut(s)	291, 346, 463
BspANI	GGCC	1 cut(s)	152
BspFNI	CGCG	2 cut(s)	108, 205
BspLI	GGNNCC	6 cut(s)	6, 175, 249, 274, 344, 843
BspMI	ACCTGC	1 cut(s)	829
BspPI	GGATC	4 cut(s)	242, 255, 268, 660
BspT107I	GGYRCC	4 cut(s)	4, 173, 342, 841
BsrBI	CCGCTC	2 cut(s)	293, 348
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	4 cut(s)	242, 254, 322, 759
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	147, 880
BssMI	GATC	6 cut(s)	49, 184, 247, 260, 652, 694
BssNI	GRCGYC	3 cut(s)	56, 66, 476
Bst4CI	ACNGT	2 cut(s)	221, 387
BstACI	GRCGYC	3 cut(s)	56, 66, 476
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	822
BstC8I	GCNNGC	5 cut(s)	164, 168, 302, 350, 791
BstDEI	CTNAG	3 cut(s)	353, 394, 772
BstDSI	CCRYGG	1 cut(s)	880
BstF5I	GGATG	4 cut(s)	177, 496, 508, 712
BstFNI	CGCG	2 cut(s)	108, 205
BstHHI	GCGC	2 cut(s)	136, 205
BstKTI	GATC	6 cut(s)	52, 187, 250, 263, 655, 697
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	6 cut(s)	49, 184, 247, 260, 652, 694
BstMCI	CGRYCG	1 cut(s)	52
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 455, 790, 825
BstNSI	RCATGY	2 cut(s)	515, 793
BstPAI	GACNNNNGTC	1 cut(s)	231
BstUI	CGCG	2 cut(s)	108, 205
BstV1I	GCAGC	2 cut(s)	16, 648
BstX2I	RGATCY	3 cut(s)	247, 260, 652
BstYI	RGATCY	3 cut(s)	247, 260, 652
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	880
BtrI	CACGTC	1 cut(s)	692
BtsCI	GGATG	4 cut(s)	177, 496, 508, 712
BtsIMutI	CAGTG	3 cut(s)	235, 327, 486
BveI	ACCTGC	1 cut(s)	829
Cac8I	GCNNGC	5 cut(s)	164, 168, 302, 350, 791
CfoI	GCGC	2 cut(s)	136, 205
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	272
CseI	GACGC	3 cut(s)	45, 74, 465
Csp6I	GTAC	3 cut(s)	61, 86, 842
CspAI	ACCGGT	1 cut(s)	269
CviAII	CATG	4 cut(s)	434, 512, 790, 869
CviQI	GTAC	3 cut(s)	61, 86, 842
DdeI	CTNAG	3 cut(s)	353, 394, 772
DpnI	GATC	6 cut(s)	51, 186, 249, 262, 654, 696
DpnII	GATC	6 cut(s)	49, 184, 247, 260, 652, 694
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eco47I	GGWCC	1 cut(s)	272
Eco72I	CACGTG	1 cut(s)	822
Eco88I	CYCGRG	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	848
EcoT22I	ATGCAT	1 cut(s)	791
FaeI	CATG	4 cut(s)	437, 515, 793, 872
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	2 cut(s)	258, 522
FatI	CATG	4 cut(s)	433, 511, 789, 868
FauNDI	CATATG	1 cut(s)	857
Fnu4HI	GCNGC	3 cut(s)	30, 346, 637
FokI	GGATG	4 cut(s)	164, 503, 515, 719
Fsp4HI	GCNGC	3 cut(s)	30, 346, 637
FspBI	CTAG	1 cut(s)	578
GlaI	GCGC	2 cut(s)	135, 204
GluI	GCNGC	3 cut(s)	30, 346, 637
GsuI	CTGGAG	2 cut(s)	237, 259
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	3 cut(s)	45, 74, 465
HhaI	GCGC	2 cut(s)	136, 205
Hin1I	GRCGYC	3 cut(s)	56, 66, 476
Hin1II	CATG	4 cut(s)	437, 515, 793, 872
Hin6I	GCGC	2 cut(s)	134, 203
HinP1I	GCGC	2 cut(s)	134, 203
HincII	GTYRAC	1 cut(s)	414
HindII	GTYRAC	1 cut(s)	414
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	210, 466
HpaI	GTTAAC	1 cut(s)	414
HpaII	CCGG	1 cut(s)	270
Hpy166II	GTNNAC	2 cut(s)	414, 689
Hpy188I	TCNGA	1 cut(s)	260
Hpy188III	TCNNGA	5 cut(s)	80, 94, 188, 224, 662
Hpy8I	GTNNAC	2 cut(s)	414, 689
Hpy99I	CGWCG	5 cut(s)	61, 68, 113, 210, 314
HpyAV	CCTTC	3 cut(s)	152, 295, 659
HpyCH4III	ACNGT	2 cut(s)	221, 387
HpyCH4IV	ACGT	8 cut(s)	84, 111, 324, 410, 562, 691, 766, 821
HpyCH4V	TGCA	7 cut(s)	32, 279, 377, 515, 713, 789, 819
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 455, 790, 825
HpyF3I	CTNAG	3 cut(s)	353, 394, 772
HpySE526I	ACGT	8 cut(s)	84, 111, 324, 410, 562, 691, 766, 821
Hsp92I	GRCGYC	3 cut(s)	56, 66, 476
Hsp92II	CATG	4 cut(s)	437, 515, 793, 872
HspAI	GCGC	2 cut(s)	134, 203
KpnI	GGTACC	1 cut(s)	845
KspAI	GTTAAC	1 cut(s)	414
Kzo9I	GATC	6 cut(s)	49, 184, 247, 260, 652, 694
LmnI	GCTCC	1 cut(s)	825
Lsp1109I	GCAGC	2 cut(s)	16, 648
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	8 cut(s)	84, 111, 324, 410, 562, 691, 766, 821
MaeIII	GTNAC	4 cut(s)	233, 325, 589, 610
MalI	GATC	6 cut(s)	51, 186, 249, 262, 654, 696
MbiI	CCGCTC	2 cut(s)	293, 348
MboI	GATC	6 cut(s)	49, 184, 247, 260, 652, 694
MboII	GAAGA	2 cut(s)	535, 755
MflI	RGATCY	3 cut(s)	247, 260, 652
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	3 cut(s)	117, 699, 848
MlyI	GAGTC	2 cut(s)	219, 475
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	6 cut(s)	79, 142, 184, 191, 261, 499
Mph1103I	ATGCAT	1 cut(s)	791
MseI	TTAA	3 cut(s)	404, 413, 444
MspI	CCGG	1 cut(s)	270
Mva1269I	GAATGC	1 cut(s)	803
MvnI	CGCG	2 cut(s)	108, 205
MwoI	GCNNNNNNNGC	4 cut(s)	26, 455, 790, 825
NdeI	CATATG	1 cut(s)	857
NdeII	GATC	6 cut(s)	49, 184, 247, 260, 652, 694
NlaIII	CATG	4 cut(s)	437, 515, 793, 872
NlaIV	GGNNCC	6 cut(s)	6, 175, 249, 274, 344, 843
NmeAIII	GCCGAG	2 cut(s)	117, 276
NmuCI	GTSAC	4 cut(s)	233, 325, 589, 610
NsiI	ATGCAT	1 cut(s)	791
NspI	RCATGY	2 cut(s)	515, 793
PaeI	GCATGC	1 cut(s)	793
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 144
PctI	GAATGC	1 cut(s)	803
Pfl23II	CGTACG	1 cut(s)	60
PinAI	ACCGGT	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	31, 347, 638
Ple19I	CGATCG	1 cut(s)	52
PleI	GAGTC	2 cut(s)	218, 474
PmaCI	CACGTG	1 cut(s)	822
PmlI	CACGTG	1 cut(s)	822
PpsI	GAGTC	2 cut(s)	218, 474
Ppu21I	YACGTR	1 cut(s)	822
PshAI	GACNNNNGTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	766
PspCI	CACGTG	1 cut(s)	822
PspLI	CGTACG	1 cut(s)	60
PspN4I	GGNNCC	6 cut(s)	6, 175, 249, 274, 344, 843
PspPI	GGNCC	1 cut(s)	272
PsuI	RGATCY	3 cut(s)	247, 260, 652
PvuI	CGATCG	1 cut(s)	52
RsaI	GTAC	3 cut(s)	62, 87, 843
RsaNI	GTAC	3 cut(s)	61, 86, 842
SaqAI	TTAA	3 cut(s)	404, 413, 444
SatI	GCNGC	3 cut(s)	30, 346, 637
Sau3AI	GATC	6 cut(s)	49, 184, 247, 260, 652, 694
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	2 cut(s)	219, 475
SduI	GDGCHC	1 cut(s)	219
SinI	GGWCC	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SphI	GCATGC	1 cut(s)	793
Sse9I	AATT	3 cut(s)	117, 699, 848
SsiI	CCGC	3 cut(s)	291, 346, 463
SspMI	CTAG	1 cut(s)	578
TaaI	ACNGT	2 cut(s)	221, 387
TaiI	ACGT	8 cut(s)	87, 114, 327, 413, 565, 694, 769, 824
TaqI	TCGA	4 cut(s)	48, 93, 183, 213
TasI	AATT	3 cut(s)	117, 699, 848
TauI	GCSGC	1 cut(s)	348
Tru1I	TTAA	3 cut(s)	404, 413, 444
Tru9I	TTAA	3 cut(s)	404, 413, 444
TscAI	CASTG	3 cut(s)	242, 334, 486
TseFI	GTSAC	4 cut(s)	233, 325, 589, 610
TseI	GCWGC	2 cut(s)	29, 636
Tsp45I	GTSAC	4 cut(s)	233, 325, 589, 610
TspDTI	ATGAA	3 cut(s)	30, 171, 841
TspGWI	ACGGA	1 cut(s)	897
TspRI	CASTG	3 cut(s)	242, 334, 486
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	1 cut(s)	848
XceI	RCATGY	2 cut(s)	515, 793
XspI	CTAG	1 cut(s)	578
Zsp2I	ATGCAT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.