Rorug02G0507300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003705
Physical Location & Seq
Reverse (-)
63870471 .. 63874134
3664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0507300.1

Sequence Viewer

Length: 2049 bp
ATGCTGCAGCTCACACCTTCTCACTCCCTCCCTCCCTCTCCCCAAAACCTCTCCTTTTCTCTCCTCCAGAGCTGCAAAACCCTACAAGAAGCAACCCAGCTCCACGCCCTCGCCCTCAAGATCGGAGCTTTCACCAACCCTTTAATCGCTTCCCGCCTCTTCTCTCTCTACGCCGACCCCAAAATCAACCACCTCACCTACGCCCGCTCCGTCTTCACCCAAATCCAAGACCCCAACTTGGTCTCCTGGAACGTCCTCATCAAATCCCACGTCACCAACCAGCGCTCCCACGACGCCGTCGTTTTGTTCCGCGAATTGGTCCTCCACCGCCACGCGCCGGATAACTTCACGTTGCCGTGTGTGATCAAGGGCTGTGCGAGGCTGAACGCGGTGGAGGAAGGGAAGCAGATTCACGGGCTGGGCTTGAAAATTGGGCTGGGCTTGGATAAGTTTGTGCAGAGCAGCTTGGTGAGTATGTACTCCAAATGTGGTGAGATTGAGTCTGCGCGGAAGGTGTTCGATGAAATGCGTGAGAGGGATTTGGTGGCGTGGAATTCTTTGATTGATGGGTACGCTAGGTGTGGGAGAGTTGATGTTGCTGTGGAGTTGTTTGATCAGATGGAGGAGAGGGATTCGTTTTCGTGGACGGTTTTGGTTGATGGGTTGTCCAAATGTGGGAATGTAGAGAAGGCTAGGGAGGTTTTTGATAGGATGCCGGATAAGAATATGGTTTCTTGGAATGCCATGATCAATGGGTACATGAAAGCTAGGGACTTTGAGACGGCGAGGGAGTTGTTTAGTCAGATGGTGACTAGAGATGTGATAACATGGAATTCGATGATTGCTGGTTATGAGTTTAATGGGAGGTTTGCGGAAGCGTTGGAGTTGTTTCCAGAGATTTTGGAAGAAGATCTTAGGCCTACTCCTGCTACATTGGTCAGTGTGCTTTCTGCTGTTTCGGGATTAGCTGCTTTGAGTAAGGGGAGATTGGTTCATTGTGTGATGGTGAAACATGGGTTTGAATTGGATGGTGTGCTTGGTACGTCGTTGATAGAAATGTATTATAAGTGTGGAAGCATTGACAGTGCAATGGCTGTGTTTCGAGGTATACAGAGGAAGAAAGTGGGGCATTGGACGGCTATAATTGTTGGTTTAGGAATGCATGGTATGGCTGACCAGGTTCTTCAGCTGTTTCTGGAAATGCGCAAAAATGGGATGGAGCCTCATGCTATAACTTTTATTGGAATCTTGAATGCATGTAGCCATGCTGGATTGGTCGATCTTGGACGTTACTATTTCAATATGATGATAAAGGATTATGGAATTGAACCCACAATTGAGCACTATGGTTGCTTTGTAGACATTTTATGTCGAGCTGGCTGTTTGGACGAGGCAAAGAATGTCATTGGGAGTATGCCAATGAAACCAAACAAAGTTATTTGGATGAGTTTACTTAGTGGTGCCCGGATCCATGGAAATGTTGAAATTGGTGATTATGCAGCTCAACATTTGATAGAGGTGTCTCCAGATACTATTGGATGCTACGTTGTGCTCTCTAACATGTATGCTGCAGCTGATCAGTGGGAGAAAGTTTCACAGGTAAGAGAAATGATGAAAAAGAGAGGTGTCAAAAAGGACCCAGGATGCAGTAGCATAGAGCACAGAGGTATGCTTCATGAGTTTATTGTTGGTGACAAATCCCATCCTCAGACAAAAGAGATATATTCCAAGTTGAGTGAGGTGAGAGAGAGACTAAAATCTGCAGGACATGTTCCTGACACAAGCCAAGTTTTATTGTGTCTTGAGGATGAAAAGGAGAAGGAAGCTGAACTGGAAAACCATAGTGAGAGATTGGCTATTGCATTTGGTCTAATTAATTTGGAACCTAGGAGTCCTATTCGCATCATAAAGAATCTTCGTGTCTGTAATGATTGCCATTCTGTCACTAAACTCCTTTCCAAGATCTATAATCGTGAGATTGTTGTCAGAGATAATAGTCGTTTCCATCACTTCGCCAATGGGTCATGTTCTTGCAAAGATTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

682

Amino Acids

76.65

Weight (kDa)

6.8

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 78 - 127 5.9e-08 PPR repeat family
PPR_1 PF12854 179 - 208 1.8e-09 PPR repeat
PPR_2 PF13041 180 - 210 6.5e-08 PPR repeat family
PPR PF01535 182 - 210 4.7e-09 PPR repeat
PPR PF01535 213 - 242 4.7e-07 PPR repeat
PPR_2 PF13041 242 - 273 2.1e-07 PPR repeat family
PPR PF01535 244 - 273 1.1e-07 PPR repeat
PPR_2 PF13041 272 - 318 7e-07 PPR repeat family
PPR_2 PF13041 375 - 421 1.8e-06 PPR repeat family
E_motif PF20431 491 - 553 1.6e-19 E motif
Eplus_motif PF20430 559 - 585 2.2e-09 E+ motif
DYW_deaminase PF14432 589 - 682 5.3e-38 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1065
Acc16I TGCGCA 1 cut(s) 1205
AccB1I GGYRCC 1 cut(s) 1460
AccBSI CCGCTC 1 cut(s) 207
AccI GTMKAC 2 cut(s) 1108, 1359
AccII CGCG 4 cut(s) 312, 335, 389, 508
AciI CCGC 7 cut(s) 154, 205, 310, 328, 389, 508, 872
AclWI GGATC 2 cut(s) 1462, 1475
AcsI RAATTY 2 cut(s) 553, 832
AcuI CTGAAG 1 cut(s) 1169
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 4 cut(s) 479, 572, 758, 1042
AfeI AGCGCT 1 cut(s) 284
AfiI CCNNNNNNNGG 4 cut(s) 238, 316, 337, 675
AflIII ACRYGT 2 cut(s) 1560, 1768
AgsI TTSAA 6 cut(s) 427, 1022, 1252, 1300, 1328, 1484
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 3 cut(s) 245, 1176, 1639
Alw21I GWGCWC 3 cut(s) 1344, 1554, 1662
Alw26I GTCTC 4 cut(s) 247, 773, 1527, 1744
AlwI GGATC 2 cut(s) 1462, 1475
Aor51HI AGCGCT 1 cut(s) 284
AoxI GGCC 1 cut(s) 917
ApeKI GCWGC 8 cut(s) 4, 7, 72, 462, 968, 1499, 1568, 1571
ApoI RAATTY 2 cut(s) 553, 832
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
AseI ATTAAT 1 cut(s) 1875
Asp700I GAANNNNTTC 1 cut(s) 515
AspA2I CCTAGG 1 cut(s) 1886
AspLEI GCGC 4 cut(s) 285, 337, 508, 1206
AspS9I GGNCC 2 cut(s) 319, 1636
AsuC2I CCSGG 1 cut(s) 1465
AvaII GGWCC 2 cut(s) 319, 1636
AvrII CCTAGG 1 cut(s) 1886
BaeGI GKGCMC 1 cut(s) 1465
BamHI GGATCC 1 cut(s) 1467
BanI GGYRCC 1 cut(s) 1460
BbsI GAAGAC 1 cut(s) 205
Bbv12I GWGCWC 3 cut(s) 1344, 1554, 1662
BbvI GCAGC 7 cut(s) 19, 59, 474, 955, 1511, 1555, 1583
BccI CCATC 9 cut(s) 560, 613, 653, 799, 997, 1022, 1210, 1710, 2013
BceAI ACGGC 4 cut(s) 281, 340, 798, 1152
BciT130I CCWGG 3 cut(s) 247, 1178, 1641
BclI TGATCA 4 cut(s) 363, 613, 747, 1576
BcnI CCSGG 1 cut(s) 1465
BcoDI GTCTC 4 cut(s) 247, 773, 1527, 1744
BfaI CTAG 5 cut(s) 576, 693, 768, 813, 1887
BfmI CTRYAG 3 cut(s) 5, 1569, 1761
BfoI RGCGCY 1 cut(s) 286
BglII AGATCT 2 cut(s) 910, 1962
BisI GCNGC 8 cut(s) 5, 8, 73, 463, 969, 1500, 1569, 1572
BlnI CCTAGG 1 cut(s) 1886
BlsI GCNGC 8 cut(s) 6, 9, 74, 464, 970, 1501, 1570, 1573
Bme1390I CCNGG 4 cut(s) 247, 1178, 1465, 1641
Bme18I GGWCC 2 cut(s) 319, 1636
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 319, 1636
BmiI GGNNCC 5 cut(s) 1221, 1462, 1469, 1638, 1884
BmrFI CCNGG 4 cut(s) 247, 1178, 1465, 1641
BmsI GCATC 4 cut(s) 702, 1529, 1634, 1911
BpiI GAAGAC 1 cut(s) 205
BpmI CTGGAG 2 cut(s) 50, 1509
BpuEI CTTGAG 2 cut(s) 101, 1823
BpuMI CCSGG 1 cut(s) 1465
BsaHI GRCGYC 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 3 cut(s) 1471, 1639, 1886
BsaXI ACNNNNNCTCC 6 cut(s) 191, 221, 227, 257, 269, 299
Bsc4I CCNNNNNNNGG 4 cut(s) 238, 316, 337, 675
Bse1I ACTGG 1 cut(s) 1836
Bse3DI GCAATG 1 cut(s) 1095
BseBI CCWGG 3 cut(s) 247, 1178, 1641
BseDI CCNNGG 3 cut(s) 1471, 1639, 1886
BseGI GGATG 8 cut(s) 717, 1033, 1221, 1449, 1544, 1649, 1702, 1813
BseLI CCNNNNNNNGG 4 cut(s) 238, 316, 337, 675
BseMI GCAATG 1 cut(s) 1095
BseMII CTCAG 1 cut(s) 1721
BseNI ACTGG 1 cut(s) 1836
BseRI GAGGAG 2 cut(s) 53, 638
BseSI GKGCMC 1 cut(s) 1465
BseXI GCAGC 7 cut(s) 19, 59, 474, 955, 1511, 1555, 1583
BseYI CCCAGC 3 cut(s) 96, 418, 436
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 4 cut(s) 312, 335, 389, 508
BshFI GGCC 1 cut(s) 919
BshNI GGYRCC 1 cut(s) 1460
BsiHKAI GWGCWC 3 cut(s) 1344, 1554, 1662
BsiSI CCGG 3 cut(s) 338, 716, 1465
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 4 cut(s) 238, 316, 337, 675
BsmAI GTCTC 4 cut(s) 247, 773, 1527, 1744
BsmBI CGTCTC 1 cut(s) 773
BsmFI GGGAC 1 cut(s) 785
BsmI GAATGC 3 cut(s) 745, 1164, 1258
BsnI GGCC 1 cut(s) 919
Bso31I GGTCTC 1 cut(s) 247
Bsp1286I GDGCHC 4 cut(s) 1344, 1465, 1554, 1662
Bsp143I GATC 9 cut(s) 120, 363, 613, 747, 910, 1279, 1467, 1576, 1962
Bsp19I CCATGG 1 cut(s) 1471
BspACI CCGC 7 cut(s) 154, 205, 310, 328, 389, 508, 872
BspANI GGCC 1 cut(s) 919
BspCNI CTCAG 1 cut(s) 1720
BspFNI CGCG 4 cut(s) 312, 335, 389, 508
BspHI TCATGA 1 cut(s) 1675
BspLI GGNNCC 5 cut(s) 1221, 1462, 1469, 1638, 1884
BspMAI CTGCAG 3 cut(s) 9, 1573, 1765
BspPI GGATC 2 cut(s) 1462, 1475
BspT107I GGYRCC 1 cut(s) 1460
BspTNI GGTCTC 1 cut(s) 247
BsrBI CCGCTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 1095
BsrI ACTGG 1 cut(s) 1836
BssECI CCNNGG 3 cut(s) 1471, 1639, 1886
BssMI GATC 9 cut(s) 120, 363, 613, 747, 910, 1279, 1467, 1576, 1962
BssNAI GTATAC 1 cut(s) 1109
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 2 cut(s) 1471, 1886
Bst1107I GTATAC 1 cut(s) 1109
Bst2UI CCWGG 3 cut(s) 247, 1178, 1641
Bst4CI ACNGT 2 cut(s) 649, 1085
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 205, 1378
BstDEI CTNAG 3 cut(s) 914, 1454, 1707
BstDSI CCRYGG 1 cut(s) 1471
BstF5I GGATG 8 cut(s) 717, 1033, 1221, 1449, 1544, 1649, 1702, 1813
BstFNI CGCG 4 cut(s) 312, 335, 389, 508
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 4 cut(s) 285, 337, 508, 1206
BstKTI GATC 9 cut(s) 123, 366, 616, 750, 913, 1282, 1470, 1579, 1965
BstMAI GTCTC 4 cut(s) 247, 773, 1527, 1744
BstMBI GATC 9 cut(s) 120, 363, 613, 747, 910, 1279, 1467, 1576, 1962
BstNI CCWGG 3 cut(s) 247, 1178, 1641
BstNSI RCATGY 3 cut(s) 1260, 1564, 1772
BstSCI CCNGG 4 cut(s) 245, 1176, 1463, 1639
BstSFI CTRYAG 3 cut(s) 5, 1569, 1761
BstSLI GKGCMC 1 cut(s) 1465
BstUI CGCG 4 cut(s) 312, 335, 389, 508
BstV1I GCAGC 7 cut(s) 19, 59, 474, 955, 1511, 1555, 1583
BstV2I GAAGAC 1 cut(s) 205
BstX2I RGATCY 3 cut(s) 910, 1467, 1962
BstYI RGATCY 3 cut(s) 910, 1467, 1962
BstZ17I GTATAC 1 cut(s) 1109
BsuRI GGCC 1 cut(s) 919
BtgI CCRYGG 1 cut(s) 1471
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 8 cut(s) 717, 1033, 1221, 1449, 1544, 1649, 1702, 1813
BtsIMutI CAGTG 3 cut(s) 946, 1090, 1586
Cac8I GCNNGC 2 cut(s) 205, 1378
CciI TCATGA 1 cut(s) 1675
CfoI GCGC 4 cut(s) 285, 337, 508, 1206
Cfr13I GGNCC 2 cut(s) 319, 1636
CseI GACGC 1 cut(s) 302
CsiI ACCWGGT 1 cut(s) 1176
Csp6I GTAC 4 cut(s) 478, 571, 757, 1041
CviQI GTAC 4 cut(s) 478, 571, 757, 1041
DdeI CTNAG 3 cut(s) 914, 1454, 1707
DpnI GATC 9 cut(s) 122, 365, 615, 749, 912, 1281, 1469, 1578, 1964
DpnII GATC 9 cut(s) 120, 363, 613, 747, 910, 1279, 1467, 1576, 1962
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco130I CCWWGG 2 cut(s) 1471, 1886
Eco147I AGGCCT 1 cut(s) 919
Eco31I GGTCTC 1 cut(s) 247
Eco47I GGWCC 2 cut(s) 319, 1636
Eco47III AGCGCT 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 1169
EcoO109I RGGNCCY 1 cut(s) 1636
EcoRI GAATTC 2 cut(s) 553, 832
EcoRII CCWGG 3 cut(s) 245, 1176, 1639
EcoT14I CCWWGG 2 cut(s) 1471, 1886
EcoT22I ATGCAT 2 cut(s) 1164, 1258
ErhI CCWWGG 2 cut(s) 1471, 1886
Esp3I CGTCTC 1 cut(s) 773
FalI AAGNNNNNCTT 2 cut(s) 897, 929
FaqI GGGAC 1 cut(s) 785
FauI CCCGC 2 cut(s) 161, 212
FbaI TGATCA 4 cut(s) 363, 613, 747, 1576
FblI GTMKAC 2 cut(s) 1108, 1359
Fnu4HI GCNGC 8 cut(s) 5, 8, 73, 463, 969, 1500, 1569, 1572
FokI GGATG 8 cut(s) 724, 1040, 1228, 1456, 1551, 1656, 1689, 1820
Fsp4HI GCNGC 8 cut(s) 5, 8, 73, 463, 969, 1500, 1569, 1572
FspBI CTAG 5 cut(s) 576, 693, 768, 813, 1887
FspI TGCGCA 1 cut(s) 1205
GlaI GCGC 4 cut(s) 284, 336, 507, 1205
GluI GCNGC 8 cut(s) 5, 8, 73, 463, 969, 1500, 1569, 1572
GsaI CCCAGC 3 cut(s) 100, 422, 440
GsuI CTGGAG 2 cut(s) 50, 1509
HaeII RGCGCY 1 cut(s) 286
HaeIII GGCC 1 cut(s) 919
HapII CCGG 3 cut(s) 338, 716, 1465
HgaI GACGC 1 cut(s) 302
HhaI GCGC 4 cut(s) 285, 337, 508, 1206
Hin1I GRCGYC 1 cut(s) 294
Hin6I GCGC 4 cut(s) 283, 335, 506, 1204
HinP1I GCGC 4 cut(s) 283, 335, 506, 1204
HinfI GANTC 6 cut(s) 409, 500, 632, 1245, 1891, 1912
HpaII CCGG 3 cut(s) 338, 716, 1465
Hpy166II GTNNAC 4 cut(s) 645, 1109, 1360, 1451
Hpy188I TCNGA 5 cut(s) 125, 618, 804, 1710, 1988
Hpy8I GTNNAC 4 cut(s) 645, 1109, 1360, 1451
Hpy99I CGWCG 3 cut(s) 296, 302, 1048
HpyAV CCTTC 5 cut(s) 27, 392, 505, 682, 1813
HpyCH4III ACNGT 2 cut(s) 649, 1085
HpyCH4IV ACGT 6 cut(s) 252, 270, 350, 1043, 1288, 1545
HpyF3I CTNAG 3 cut(s) 914, 1454, 1707
HpySE526I ACGT 6 cut(s) 252, 270, 350, 1043, 1288, 1545
Hsp92I GRCGYC 1 cut(s) 294
HspAI GCGC 4 cut(s) 283, 335, 506, 1204
Ksp22I TGATCA 4 cut(s) 363, 613, 747, 1576
Kzo9I GATC 9 cut(s) 120, 363, 613, 747, 910, 1279, 1467, 1576, 1962
LmnI GCTCC 5 cut(s) 105, 125, 212, 290, 1219
Lsp1109I GCAGC 7 cut(s) 19, 59, 474, 955, 1511, 1555, 1583
LweI GCATC 4 cut(s) 702, 1529, 1634, 1911
MabI ACCWGGT 1 cut(s) 1176
MaeI CTAG 5 cut(s) 576, 693, 768, 813, 1887
MaeII ACGT 6 cut(s) 252, 270, 350, 1043, 1288, 1545
MaeIII GTNAC 5 cut(s) 271, 808, 1289, 1691, 1942
MalI GATC 9 cut(s) 122, 365, 615, 749, 912, 1281, 1469, 1578, 1964
MbiI CCGCTC 1 cut(s) 207
MboI GATC 9 cut(s) 120, 363, 613, 747, 910, 1279, 1467, 1576, 1962
MboII GAAGA 7 cut(s) 151, 205, 917, 920, 1129, 1175, 1907
MfeI CAATTG 1 cut(s) 1335
MflI RGATCY 3 cut(s) 910, 1467, 1962
MhlI GDGCHC 4 cut(s) 1344, 1465, 1554, 1662
MlyI GAGTC 2 cut(s) 509, 1900
MmeI TCCRAC 1 cut(s) 861
Mph1103I ATGCAT 2 cut(s) 1164, 1258
MroXI GAANNNNTTC 1 cut(s) 515
MseI TTAA 3 cut(s) 143, 858, 1875
MslI CAYNNNNRTG 1 cut(s) 1476
MspA1I CMGCKG 2 cut(s) 1189, 1574
MspI CCGG 3 cut(s) 338, 716, 1465
MspR9I CCNGG 4 cut(s) 247, 1178, 1465, 1641
MunI CAATTG 1 cut(s) 1335
Mva1269I GAATGC 3 cut(s) 745, 1164, 1258
MvaI CCWGG 3 cut(s) 247, 1178, 1641
MvnI CGCG 4 cut(s) 312, 335, 389, 508
NciI CCSGG 1 cut(s) 1465
NcoI CCATGG 1 cut(s) 1471
NdeII GATC 9 cut(s) 120, 363, 613, 747, 910, 1279, 1467, 1576, 1962
NlaIV GGNNCC 5 cut(s) 1221, 1462, 1469, 1638, 1884
NmuCI GTSAC 4 cut(s) 271, 808, 1691, 1942
NsbI TGCGCA 1 cut(s) 1205
NsiI ATGCAT 2 cut(s) 1164, 1258
NspI RCATGY 3 cut(s) 1260, 1564, 1772
PagI TCATGA 1 cut(s) 1675
PceI AGGCCT 1 cut(s) 919
PciI ACATGT 2 cut(s) 1560, 1768
PcsI WCGNNNNNNNCGW 2 cut(s) 207, 297
PctI GAATGC 3 cut(s) 745, 1164, 1258
PdmI GAANNNNTTC 1 cut(s) 515
PfeI GAWTC 4 cut(s) 409, 632, 1245, 1912
PflFI GACNNNGTC 1 cut(s) 296
PfoI TCCNGGA 1 cut(s) 245
PkrI GCNGC 8 cut(s) 6, 9, 74, 464, 970, 1501, 1570, 1573
PleI GAGTC 2 cut(s) 508, 1899
PpsI GAGTC 2 cut(s) 508, 1899
PpuMI RGGWCCY 1 cut(s) 1636
PscI ACATGT 2 cut(s) 1560, 1768
PshBI ATTAAT 1 cut(s) 1875
PsiI TTATAA 1 cut(s) 1065
Psp5II RGGWCCY 1 cut(s) 1636
Psp6I CCWGG 3 cut(s) 245, 1176, 1639
PspFI CCCAGC 3 cut(s) 96, 418, 436
PspGI CCWGG 3 cut(s) 245, 1176, 1639
PspN4I GGNNCC 5 cut(s) 1221, 1462, 1469, 1638, 1884
PspPI GGNCC 2 cut(s) 319, 1636
PspPPI RGGWCCY 1 cut(s) 1636
PstI CTGCAG 3 cut(s) 9, 1573, 1765
PsuI RGATCY 3 cut(s) 910, 1467, 1962
PsyI GACNNNGTC 1 cut(s) 296
PvuII CAGCTG 2 cut(s) 1189, 1574
RsaI GTAC 4 cut(s) 479, 572, 758, 1042
RsaNI GTAC 4 cut(s) 478, 571, 757, 1041
RseI CAYNNNNRTG 1 cut(s) 1476
SaqAI TTAA 3 cut(s) 143, 858, 1875
SatI GCNGC 8 cut(s) 5, 8, 73, 463, 969, 1500, 1569, 1572
Sau3AI GATC 9 cut(s) 120, 363, 613, 747, 910, 1279, 1467, 1576, 1962
Sau96I GGNCC 2 cut(s) 319, 1636
SchI GAGTC 2 cut(s) 509, 1900
ScrFI CCNGG 4 cut(s) 247, 1178, 1465, 1641
SduI GDGCHC 4 cut(s) 1344, 1465, 1554, 1662
SexAI ACCWGGT 1 cut(s) 1176
SfaNI GCATC 4 cut(s) 702, 1529, 1634, 1911
SfcI CTRYAG 3 cut(s) 5, 1569, 1761
SinI GGWCC 2 cut(s) 319, 1636
SmiMI CAYNNNNRTG 1 cut(s) 1476
SmlI CTYRAG 2 cut(s) 116, 1802
SmoI CTYRAG 2 cut(s) 116, 1802
SseBI AGGCCT 1 cut(s) 919
SsiI CCGC 7 cut(s) 154, 205, 310, 328, 389, 508, 872
SspMI CTAG 5 cut(s) 576, 693, 768, 813, 1887
StuI AGGCCT 1 cut(s) 919
StyD4I CCNGG 4 cut(s) 245, 1176, 1463, 1639
StyI CCWWGG 2 cut(s) 1471, 1886
TaaI ACNGT 2 cut(s) 649, 1085
TaiI ACGT 6 cut(s) 255, 273, 353, 1046, 1291, 1548
TaqI TCGA 5 cut(s) 519, 836, 1102, 1278, 1372
TatI WGTACW 1 cut(s) 477
TfiI GAWTC 4 cut(s) 409, 632, 1245, 1912
Tru1I TTAA 3 cut(s) 143, 858, 1875
Tru9I TTAA 3 cut(s) 143, 858, 1875
TscAI CASTG 3 cut(s) 946, 1090, 1586
TseFI GTSAC 4 cut(s) 271, 808, 1691, 1942
TseI GCWGC 8 cut(s) 4, 7, 72, 462, 968, 1499, 1568, 1571
Tsp45I GTSAC 4 cut(s) 271, 808, 1691, 1942
TspDTI ATGAA 7 cut(s) 537, 776, 983, 1436, 1628, 1664, 1824
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 3 cut(s) 946, 1090, 1586
Tth111I GACNNNGTC 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 319, 1636
VspI ATTAAT 1 cut(s) 1875
XapI RAATTY 2 cut(s) 553, 832
XceI RCATGY 3 cut(s) 1260, 1564, 1772
XmaJI CCTAGG 1 cut(s) 1886
XmiI GTMKAC 2 cut(s) 1108, 1359
XmnI GAANNNNTTC 1 cut(s) 515
XspI CTAG 5 cut(s) 576, 693, 768, 813, 1887
Zsp2I ATGCAT 2 cut(s) 1164, 1258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.