Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Reverse (-)

26118487 .. 26119738

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00305470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCCAAAGAACAACGCGTCTTTGGGATCGGTCTACGAGTTCTTGAAGCGGTGCCGACTCGCCGTAATCGGATCTCTCCGGATCGTTCGGGTCGATCGGGCGTCGTATGACGCCTCTTCATCTCTTGACGTACTTGTCGAGATAGGAGAGCGCGACATTGAAATCGAACGCCGCTTTGCGCTCGGTGAACCCGAGGCCGAGGAAGGTGTGCTTGCCGGTGCCATCCTCGATCTTGAGGACGAAGTAGCGAGACGAGTCGAGCACGGTCTTGACGGAGGTCGCCGGAGTTTGGATCTTCCGGTCGGATCTCGCATCGGTCCTTGCACGACCTTCTCCGCTCTCGGCGACCTTCTCCGCTCTTGGCGAGCTTCTTGTTGCTACGGCTGCGTTTGCAATACGTTAACCGAAAAGTTTGGGAAGCATGGTTTGGTTAAAGCCAAACCAACTGTGTGGAGTCGTGCGGCGCCGGTGAGAATGGATGATGGAATGGATGAGGGGCAGGCACCAAAGAAGAAGCAGGAGTTGATTGATGATCCCATGCTCGAATGTGATATGGCAAAGCTAGATAGGCTAAAGAGGAAGGATGAGCGCCAAAGAGAGGCATTGGACCAGTTGGGACATGTGGATGACATTGTAAATGACCTTAGTATGTGCTTGATATGTTATTGTGGTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

225

Amino Acids

24.96

Weight (kDa)

5.28

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccB1I	GGYRCC	4 cut(s)	51, 218, 463, 502
AccBSI	CCGCTC	2 cut(s)	338, 357
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	2 cut(s)	17, 153
AccIII	TCCGGA	1 cut(s)	78
AciI	CCGC	5 cut(s)	49, 172, 336, 355, 461
AclWI	GGATC	6 cut(s)	34, 79, 89, 300, 313, 527
AcyI	GRCGYC	3 cut(s)	101, 111, 464
AfaI	GTAC	1 cut(s)	132
AfiI	CCNNNNNNNGG	2 cut(s)	289, 598
AflIII	ACRYGT	2 cut(s)	15, 619
AgsI	TTSAA	2 cut(s)	46, 161
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	2 cut(s)	368, 562
AluI	AGCT	2 cut(s)	368, 562
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	6 cut(s)	34, 79, 89, 300, 313, 527
Ama87I	CYCGRG	1 cut(s)	191
Aor13HI	TCCGGA	1 cut(s)	78
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	384
AspLEI	GCGC	4 cut(s)	153, 181, 466, 591
AspS9I	GGNCC	2 cut(s)	317, 607
AsuHPI	GGTGA	2 cut(s)	197, 481
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	317, 607
BanI	GGYRCC	4 cut(s)	51, 218, 463, 502
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	371
BccI	CCATC	2 cut(s)	230, 476
BceAI	ACGGC	2 cut(s)	47, 397
BcoDI	GTCTC	1 cut(s)	244
BfaI	CTAG	1 cut(s)	563
BfoI	RGCGCY	2 cut(s)	467, 592
BisI	GCNGC	3 cut(s)	172, 385, 462
BlsI	GCNGC	3 cut(s)	173, 386, 463
Bme18I	GGWCC	2 cut(s)	317, 607
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	317, 607
BmiI	GGNNCC	4 cut(s)	53, 220, 465, 504
BmsI	GCATC	1 cut(s)	321
BoxI	GACNNNNGTC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	254
BsaHI	GRCGYC	3 cut(s)	101, 111, 464
BsaJI	CCNNGG	2 cut(s)	192, 198
BsaWI	WCCGGW	2 cut(s)	78, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 598
Bse118I	RCCGGY	2 cut(s)	215, 466
Bse1I	ACTGG	1 cut(s)	610
BseAI	TCCGGA	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	192, 198
BseGI	GGATG	5 cut(s)	222, 484, 496, 589, 631
BseLI	CCNNNNNNNGG	2 cut(s)	289, 598
BseNI	ACTGG	1 cut(s)	610
BseXI	GCAGC	1 cut(s)	371
Bsh1236I	CGCG	2 cut(s)	17, 153
Bsh1285I	CGRYCG	2 cut(s)	97, 303
BshFI	GGCC	1 cut(s)	197
BshNI	GGYRCC	4 cut(s)	51, 218, 463, 502
BsiEI	CGRYCG	2 cut(s)	97, 303
BsiHKAI	GWGCWC	1 cut(s)	264
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	5 cut(s)	79, 216, 283, 299, 467
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	2 cut(s)	289, 598
BsmAI	GTCTC	1 cut(s)	244
BsmBI	CGTCTC	1 cut(s)	244
BsmFI	GGGAC	1 cut(s)	630
BsnI	GGCC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp13I	TCCGGA	1 cut(s)	78
Bsp143I	GATC	8 cut(s)	26, 71, 81, 94, 229, 292, 305, 532
BspACI	CCGC	5 cut(s)	49, 172, 336, 355, 461
BspANI	GGCC	1 cut(s)	197
BspEI	TCCGGA	1 cut(s)	78
BspFNI	CGCG	2 cut(s)	17, 153
BspLI	GGNNCC	4 cut(s)	53, 220, 465, 504
BspPI	GGATC	6 cut(s)	34, 79, 89, 300, 313, 527
BspT107I	GGYRCC	4 cut(s)	51, 218, 463, 502
BsrBI	CCGCTC	2 cut(s)	338, 357
BsrFI	RCCGGY	2 cut(s)	215, 466
BsrI	ACTGG	1 cut(s)	610
BssAI	RCCGGY	2 cut(s)	215, 466
BssECI	CCNNGG	2 cut(s)	192, 198
BssMI	GATC	8 cut(s)	26, 71, 81, 94, 229, 292, 305, 532
BssNI	GRCGYC	3 cut(s)	101, 111, 464
Bst4CI	ACNGT	2 cut(s)	266, 448
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	3 cut(s)	101, 111, 464
BstC8I	GCNNGC	3 cut(s)	213, 366, 501
BstDEI	CTNAG	1 cut(s)	644
BstF5I	GGATG	5 cut(s)	222, 484, 496, 589, 631
BstFNI	CGCG	2 cut(s)	17, 153
BstH2I	RGCGCY	2 cut(s)	467, 592
BstHHI	GCGC	4 cut(s)	153, 181, 466, 591
BstKTI	GATC	8 cut(s)	29, 74, 84, 97, 232, 295, 308, 535
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	8 cut(s)	26, 71, 81, 94, 229, 292, 305, 532
BstMCI	CGRYCG	2 cut(s)	97, 303
BstMWI	GCNNNNNNNGC	3 cut(s)	384, 390, 568
BstNSI	RCATGY	1 cut(s)	623
BstPAI	GACNNNNGTC	1 cut(s)	276
BstUI	CGCG	2 cut(s)	17, 153
BstV1I	GCAGC	1 cut(s)	371
BstX2I	RGATCY	3 cut(s)	71, 292, 305
BstXI	CCANNNNNNTGG	1 cut(s)	450
BstYI	RGATCY	3 cut(s)	71, 292, 305
BsuRI	GGCC	1 cut(s)	197
BtsCI	GGATG	5 cut(s)	222, 484, 496, 589, 631
Cac8I	GCNNGC	3 cut(s)	213, 366, 501
CfoI	GCGC	4 cut(s)	153, 181, 466, 591
Cfr10I	RCCGGY	2 cut(s)	215, 466
Cfr13I	GGNCC	2 cut(s)	317, 607
CseI	GACGC	3 cut(s)	6, 90, 119
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	3 cut(s)	422, 538, 620
CviJI	RGCY	6 cut(s)	197, 368, 384, 437, 562, 571
CviKI_1	RGCY	6 cut(s)	197, 368, 384, 437, 562, 571
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	1 cut(s)	644
DinI	GGCGCC	1 cut(s)	465
DpnI	GATC	8 cut(s)	28, 73, 83, 96, 231, 294, 307, 534
DpnII	GATC	8 cut(s)	26, 71, 81, 94, 229, 292, 305, 532
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	317, 607
Eco88I	CYCGRG	1 cut(s)	191
EgeI	GGCGCC	1 cut(s)	465
EheI	GGCGCC	1 cut(s)	465
Esp3I	CGTCTC	1 cut(s)	244
FaeI	CATG	3 cut(s)	425, 541, 623
FaiI	YATR	8 cut(s)	108, 423, 539, 554, 621, 650, 661, 676
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	1 cut(s)	630
FatI	CATG	3 cut(s)	421, 537, 619
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	3 cut(s)	172, 385, 462
FokI	GGATG	5 cut(s)	209, 491, 503, 596, 638
Fsp4HI	GCNGC	3 cut(s)	172, 385, 462
FspBI	CTAG	1 cut(s)	563
GlaI	GCGC	4 cut(s)	152, 180, 465, 590
GluI	GCNGC	3 cut(s)	172, 385, 462
HaeII	RGCGCY	2 cut(s)	467, 592
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	5 cut(s)	79, 216, 283, 299, 467
HgaI	GACGC	3 cut(s)	6, 90, 119
HhaI	GCGC	4 cut(s)	153, 181, 466, 591
Hin1I	GRCGYC	3 cut(s)	101, 111, 464
Hin1II	CATG	3 cut(s)	425, 541, 623
Hin6I	GCGC	4 cut(s)	151, 179, 464, 589
HinP1I	GCGC	4 cut(s)	151, 179, 464, 589
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	3 cut(s)	57, 255, 454
HpaI	GTTAAC	1 cut(s)	402
HpaII	CCGG	5 cut(s)	79, 216, 283, 299, 467
HphI	GGTGA	2 cut(s)	197, 481
Hpy166II	GTNNAC	3 cut(s)	34, 188, 402
Hpy188I	TCNGA	2 cut(s)	71, 305
Hpy188III	TCNNGA	6 cut(s)	43, 79, 125, 139, 233, 269
Hpy8I	GTNNAC	3 cut(s)	34, 188, 402
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	4 cut(s)	197, 340, 359, 574
HpyCH4III	ACNGT	2 cut(s)	266, 448
HpyCH4IV	ACGT	2 cut(s)	129, 398
HpyCH4V	TGCA	2 cut(s)	324, 393
HpyF10VI	GCNNNNNNNGC	3 cut(s)	384, 390, 568
HpyF3I	CTNAG	1 cut(s)	644
HpySE526I	ACGT	2 cut(s)	129, 398
Hsp92I	GRCGYC	3 cut(s)	101, 111, 464
Hsp92II	CATG	3 cut(s)	425, 541, 623
HspAI	GCGC	4 cut(s)	151, 179, 464, 589
KasI	GGCGCC	1 cut(s)	463
Kpn2I	TCCGGA	1 cut(s)	78
KspAI	GTTAAC	1 cut(s)	402
Kzo9I	GATC	8 cut(s)	26, 71, 81, 94, 229, 292, 305, 532
LpnPI	CCDG	8 cut(s)	92, 229, 296, 312, 480, 485, 503, 623
Lsp1109I	GCAGC	1 cut(s)	371
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	2 cut(s)	129, 398
MalI	GATC	8 cut(s)	28, 73, 83, 96, 231, 294, 307, 534
MbiI	CCGCTC	2 cut(s)	338, 357
MboI	GATC	8 cut(s)	26, 71, 81, 94, 229, 292, 305, 532
MboII	GAAGA	3 cut(s)	108, 287, 523
MflI	RGATCY	3 cut(s)	71, 292, 305
MhlI	GDGCHC	1 cut(s)	264
MluI	ACGCGT	1 cut(s)	15
Mly113I	GGCGCC	1 cut(s)	464
MlyI	GAGTC	3 cut(s)	51, 264, 463
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	9 cut(s)	124, 187, 193, 229, 236, 269, 487, 570, 592
MroI	TCCGGA	1 cut(s)	78
MseI	TTAA	2 cut(s)	401, 432
MslI	CAYNNNNRTG	1 cut(s)	624
MspI	CCGG	5 cut(s)	79, 216, 283, 299, 467
MvnI	CGCG	2 cut(s)	17, 153
MwoI	GCNNNNNNNGC	3 cut(s)	384, 390, 568
NarI	GGCGCC	1 cut(s)	464
NdeII	GATC	8 cut(s)	26, 71, 81, 94, 229, 292, 305, 532
NlaIII	CATG	3 cut(s)	425, 541, 623
NlaIV	GGNNCC	4 cut(s)	53, 220, 465, 504
NmeAIII	GCCGAG	2 cut(s)	223, 321
NspI	RCATGY	1 cut(s)	623
PciI	ACATGT	1 cut(s)	619
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 135, 189
PkrI	GCNGC	3 cut(s)	173, 386, 463
Ple19I	CGATCG	1 cut(s)	97
PleI	GAGTC	3 cut(s)	51, 263, 462
PluTI	GGCGCC	1 cut(s)	467
PpsI	GAGTC	3 cut(s)	51, 263, 462
PscI	ACATGT	1 cut(s)	619
PshAI	GACNNNNGTC	1 cut(s)	276
PspN4I	GGNNCC	4 cut(s)	53, 220, 465, 504
PspPI	GGNCC	2 cut(s)	317, 607
PsuI	RGATCY	3 cut(s)	71, 292, 305
PvuI	CGATCG	1 cut(s)	97
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
RseI	CAYNNNNRTG	1 cut(s)	624
SaqAI	TTAA	2 cut(s)	401, 432
SatI	GCNGC	3 cut(s)	172, 385, 462
Sau3AI	GATC	8 cut(s)	26, 71, 81, 94, 229, 292, 305, 532
Sau96I	GGNCC	2 cut(s)	317, 607
SchI	GAGTC	3 cut(s)	51, 264, 463
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	9 cut(s)	132, 208, 280, 332, 351, 370, 401, 564, 645
SfaNI	GCATC	1 cut(s)	321
SfoI	GGCGCC	1 cut(s)	465
SgrAI	CRCCGGYG	1 cut(s)	466
SinI	GGWCC	2 cut(s)	317, 607
SmiMI	CAYNNNNRTG	1 cut(s)	624
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SsiI	CCGC	5 cut(s)	49, 172, 336, 355, 461
SspDI	GGCGCC	1 cut(s)	463
SspMI	CTAG	1 cut(s)	563
TaaI	ACNGT	2 cut(s)	266, 448
TaiI	ACGT	2 cut(s)	132, 401
TaqI	TCGA	6 cut(s)	93, 138, 165, 228, 258, 543
TaqII	GACCGA	2 cut(s)	19, 305
TauI	GCSGC	2 cut(s)	174, 464
Tru1I	TTAA	2 cut(s)	401, 432
Tru9I	TTAA	2 cut(s)	401, 432
TseI	GCWGC	1 cut(s)	384
TspDTI	ATGAA	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	288
VpaK11BI	GGWCC	2 cut(s)	317, 607
XceI	RCATGY	1 cut(s)	623
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.