Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Reverse (-)

62004774 .. 62017973

Gene Structure 13200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG437800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCACCAAACGGTGACGACTCGCCGGTAATCGGATCCCTCCAGATCGTTCAGGTCGATCGGGCGTCGTACGACGCCTCTTTGTCTCTTGACGTACTTGTCGAGATAGGAGAACGCGACGTTGAAATTGAACGCCACTTTGCGCTCGGCGAACCCGAGGCCGATGAAGGCTTGCTTGCTGGTGCCATCCTCGATCTTGAGGACGAAGTAGCGCGACGAGTCGAGCACGGTCTTGACGGGGGTCACTGGAGTTTGGATCCTCCAGTCGGATCTCGCACCGGTCCCTGCACAACCTTCTCCGCTCTCGGCGAGCTTCTCGTCGCTACTGGCAACGTCACTGACTTTGATGGGTGCCGCTCGCTTAGTTTCTACAATAAGCTTATTGCATTGGAACTGTGGTGCTTAGTTTTGTTAAATACGTTAACCGAAAAGTTTGGGAAGCATGATTTGGTTAAAGCCAAACAGGCTGTGCGGAGTCTTGTGGCGTCAGTGAGAATGGATGATGGAATGGATGAGGGACATGCACCAAAGAAGAAGCAGGAGTTGATTGATAGCCCCGTGCTAACTGAACGTGATAAGGCAAAGCTAGATAGGGGCGTGACAGCAGGATTGCCTGTTGTCACTATAAATAATGATGGTGGTGGCAGCTCAAATGTCAAGGATCTCCATCTGGAAGGCTTCAATGTTTCTGTGGGTGGACGTGATCTAATTATGGATGGTGCAGTAAGACTTGGCATTATGGACTTATTGGAAGAAATGCTACTGGAAAAACAACGTTTCTTAGGCACTTGGCTATGCATGCCATTGATAGCATTCGCCAAGTATTGCACGTGGAGCAAGAAGTGGCAGGTACCTGAATTCATCATATGTAAAGAACATGATAATACCCACGGAAACATTCAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

302

Amino Acids

32.99

Weight (kDa)

4.81

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	838
Acc65I	GGTACC	1 cut(s)	850
AccB1I	GGYRCC	4 cut(s)	4, 182, 351, 850
AccBSI	CCGCTC	2 cut(s)	302, 357
AccII	CGCG	2 cut(s)	117, 214
AciI	CCGC	3 cut(s)	300, 355, 472
AclI	AACGTT	1 cut(s)	775
AclWI	GGATC	6 cut(s)	30, 43, 251, 264, 277, 669
AcsI	RAATTY	1 cut(s)	857
AcvI	CACGTG	1 cut(s)	831
AcyI	GRCGYC	3 cut(s)	65, 75, 485
AfaI	GTAC	3 cut(s)	71, 96, 852
AfiI	CCNNNNNNNGG	2 cut(s)	32, 266
AgeI	ACCGGT	1 cut(s)	278
AgsI	TTSAA	4 cut(s)	125, 131, 682, 902
AjiI	CACGTC	1 cut(s)	701
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AluBI	AGCT	4 cut(s)	313, 379, 586, 648
AluI	AGCT	4 cut(s)	313, 379, 586, 648
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	6 cut(s)	30, 43, 251, 264, 277, 669
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	645
ApoI	RAATTY	1 cut(s)	857
AsiGI	ACCGGT	1 cut(s)	278
Asp718I	GGTACC	1 cut(s)	850
AspLEI	GCGC	2 cut(s)	145, 214
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	26
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	281
BamHI	GGATCC	2 cut(s)	35, 256
BanI	GGYRCC	4 cut(s)	4, 182, 351, 850
BarI	GAAGNNNNNNTAC	2 cut(s)	744, 776
BbrPI	CACGTG	1 cut(s)	831
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	657
BccI	CCATC	6 cut(s)	194, 341, 497, 629, 675, 710
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	587
BfuAI	ACCTGC	1 cut(s)	838
BglI	GCCNNNNNGGC	1 cut(s)	464
BisI	GCNGC	2 cut(s)	355, 646
BlsI	GCNGC	2 cut(s)	356, 647
Bme18I	GGWCC	1 cut(s)	281
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	701
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	7 cut(s)	6, 37, 184, 258, 283, 353, 852
BoxI	GACNNNNGTC	1 cut(s)	240
BpmI	CTGGAG	3 cut(s)	26, 246, 268
BpuEI	CTTGAG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	831
BsaBI	GATNNNNATC	1 cut(s)	666
BsaHI	GRCGYC	3 cut(s)	65, 75, 485
BsaJI	CCNNGG	2 cut(s)	156, 889
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 266
Bse118I	RCCGGY	2 cut(s)	25, 278
Bse1I	ACTGG	4 cut(s)	251, 263, 331, 768
Bse8I	GATNNNNATC	1 cut(s)	666
BseDI	CCNNGG	2 cut(s)	156, 889
BseGI	GGATG	4 cut(s)	186, 505, 517, 721
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	2 cut(s)	32, 266
BseNI	ACTGG	4 cut(s)	251, 263, 331, 768
BseXI	GCAGC	1 cut(s)	657
BsgI	GTGCAG	2 cut(s)	271, 741
Bsh1236I	CGCG	2 cut(s)	117, 214
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	161
BshNI	GGYRCC	4 cut(s)	4, 182, 351, 850
BshTI	ACCGGT	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	26, 279
BsiWI	CGTACG	1 cut(s)	69
BslFI	GGGAC	2 cut(s)	267, 531
BslI	CCNNNNNNNGG	2 cut(s)	32, 266
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	2 cut(s)	267, 531
BsmI	GAATGC	1 cut(s)	812
BsnI	GGCC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	8 cut(s)	35, 45, 58, 193, 256, 269, 661, 703
BspACI	CCGC	3 cut(s)	300, 355, 472
BspANI	GGCC	1 cut(s)	161
BspFNI	CGCG	2 cut(s)	117, 214
BspLI	GGNNCC	7 cut(s)	6, 37, 184, 258, 283, 353, 852
BspMI	ACCTGC	1 cut(s)	838
BspPI	GGATC	6 cut(s)	30, 43, 251, 264, 277, 669
BspT107I	GGYRCC	4 cut(s)	4, 182, 351, 850
BsrBI	CCGCTC	2 cut(s)	302, 357
BsrFI	RCCGGY	2 cut(s)	25, 278
BsrI	ACTGG	4 cut(s)	251, 263, 331, 768
BssAI	RCCGGY	2 cut(s)	25, 278
BssECI	CCNNGG	2 cut(s)	156, 889
BssMI	GATC	8 cut(s)	35, 45, 58, 193, 256, 269, 661, 703
BssNI	GRCGYC	3 cut(s)	65, 75, 485
Bst4CI	ACNGT	3 cut(s)	14, 230, 396
BstACI	GRCGYC	3 cut(s)	65, 75, 485
BstBAI	YACGTR	1 cut(s)	831
BstC8I	GCNNGC	5 cut(s)	173, 177, 311, 359, 800
BstDEI	CTNAG	3 cut(s)	362, 403, 781
BstDSI	CCRYGG	1 cut(s)	889
BstF5I	GGATG	4 cut(s)	186, 505, 517, 721
BstFNI	CGCG	2 cut(s)	117, 214
BstHHI	GCGC	2 cut(s)	145, 214
BstKTI	GATC	8 cut(s)	38, 48, 61, 196, 259, 272, 664, 706
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	8 cut(s)	35, 45, 58, 193, 256, 269, 661, 703
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	3 cut(s)	464, 799, 834
BstNSI	RCATGY	2 cut(s)	524, 802
BstPAI	GACNNNNGTC	1 cut(s)	240
BstUI	CGCG	2 cut(s)	117, 214
BstV1I	GCAGC	1 cut(s)	657
BstX2I	RGATCY	4 cut(s)	35, 256, 269, 661
BstYI	RGATCY	4 cut(s)	35, 256, 269, 661
BsuRI	GGCC	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	889
BtrI	CACGTC	1 cut(s)	701
BtsCI	GGATG	4 cut(s)	186, 505, 517, 721
BtsIMutI	CAGTG	3 cut(s)	244, 336, 495
BveI	ACCTGC	1 cut(s)	838
Cac8I	GCNNGC	5 cut(s)	173, 177, 311, 359, 800
CfoI	GCGC	2 cut(s)	145, 214
Cfr10I	RCCGGY	2 cut(s)	25, 278
Cfr13I	GGNCC	1 cut(s)	281
CseI	GACGC	3 cut(s)	54, 83, 474
Csp6I	GTAC	3 cut(s)	70, 95, 851
CspAI	ACCGGT	1 cut(s)	278
CviAII	CATG	4 cut(s)	443, 521, 799, 878
CviQI	GTAC	3 cut(s)	70, 95, 851
DdeI	CTNAG	3 cut(s)	362, 403, 781
DpnI	GATC	8 cut(s)	37, 47, 60, 195, 258, 271, 663, 705
DpnII	GATC	8 cut(s)	35, 45, 58, 193, 256, 269, 661, 703
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	281
Eco72I	CACGTG	1 cut(s)	831
Eco88I	CYCGRG	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	857
EcoT22I	ATGCAT	1 cut(s)	800
FaeI	CATG	4 cut(s)	446, 524, 802, 881
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	2 cut(s)	267, 531
FatI	CATG	4 cut(s)	442, 520, 798, 877
FauNDI	CATATG	1 cut(s)	866
Fnu4HI	GCNGC	2 cut(s)	355, 646
FokI	GGATG	4 cut(s)	173, 512, 524, 728
Fsp4HI	GCNGC	2 cut(s)	355, 646
FspBI	CTAG	1 cut(s)	587
GlaI	GCGC	2 cut(s)	144, 213
GluI	GCNGC	2 cut(s)	355, 646
GsuI	CTGGAG	3 cut(s)	26, 246, 268
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	2 cut(s)	26, 279
HgaI	GACGC	3 cut(s)	54, 83, 474
HhaI	GCGC	2 cut(s)	145, 214
Hin1I	GRCGYC	3 cut(s)	65, 75, 485
Hin1II	CATG	4 cut(s)	446, 524, 802, 881
Hin6I	GCGC	2 cut(s)	143, 212
HinP1I	GCGC	2 cut(s)	143, 212
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	3 cut(s)	20, 219, 475
HpaI	GTTAAC	1 cut(s)	423
HpaII	CCGG	2 cut(s)	26, 279
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	2 cut(s)	423, 698
Hpy188I	TCNGA	2 cut(s)	35, 269
Hpy188III	TCNNGA	6 cut(s)	43, 89, 103, 197, 233, 671
Hpy8I	GTNNAC	2 cut(s)	423, 698
Hpy99I	CGWCG	5 cut(s)	70, 77, 122, 219, 323
HpyAV	CCTTC	3 cut(s)	161, 304, 668
HpyCH4III	ACNGT	3 cut(s)	14, 230, 396
HpyCH4IV	ACGT	8 cut(s)	93, 120, 333, 419, 571, 700, 775, 830
HpyCH4V	TGCA	6 cut(s)	288, 386, 524, 722, 798, 828
HpyF10VI	GCNNNNNNNGC	3 cut(s)	464, 799, 834
HpyF3I	CTNAG	3 cut(s)	362, 403, 781
HpySE526I	ACGT	8 cut(s)	93, 120, 333, 419, 571, 700, 775, 830
Hsp92I	GRCGYC	3 cut(s)	65, 75, 485
Hsp92II	CATG	4 cut(s)	446, 524, 802, 881
HspAI	GCGC	2 cut(s)	143, 212
KpnI	GGTACC	1 cut(s)	854
KspAI	GTTAAC	1 cut(s)	423
Kzo9I	GATC	8 cut(s)	35, 45, 58, 193, 256, 269, 661, 703
LmnI	GCTCC	1 cut(s)	834
Lsp1109I	GCAGC	1 cut(s)	657
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	8 cut(s)	93, 120, 333, 419, 571, 700, 775, 830
MaeIII	GTNAC	5 cut(s)	14, 242, 334, 598, 619
MalI	GATC	8 cut(s)	37, 47, 60, 195, 258, 271, 663, 705
MbiI	CCGCTC	2 cut(s)	302, 357
MboI	GATC	8 cut(s)	35, 45, 58, 193, 256, 269, 661, 703
MboII	GAAGA	2 cut(s)	544, 764
MflI	RGATCY	4 cut(s)	35, 256, 269, 661
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	3 cut(s)	126, 708, 857
MlyI	GAGTC	3 cut(s)	14, 228, 484
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	7 cut(s)	50, 88, 151, 193, 200, 270, 508
Mph1103I	ATGCAT	1 cut(s)	800
MseI	TTAA	3 cut(s)	413, 422, 453
MspI	CCGG	2 cut(s)	26, 279
Mva1269I	GAATGC	1 cut(s)	812
MvnI	CGCG	2 cut(s)	117, 214
MwoI	GCNNNNNNNGC	3 cut(s)	464, 799, 834
NdeI	CATATG	1 cut(s)	866
NdeII	GATC	8 cut(s)	35, 45, 58, 193, 256, 269, 661, 703
NlaIII	CATG	4 cut(s)	446, 524, 802, 881
NlaIV	GGNNCC	7 cut(s)	6, 37, 184, 258, 283, 353, 852
NmeAIII	GCCGAG	2 cut(s)	126, 285
NmuCI	GTSAC	5 cut(s)	14, 242, 334, 598, 619
NsiI	ATGCAT	1 cut(s)	800
NspI	RCATGY	2 cut(s)	524, 802
PaeI	GCATGC	1 cut(s)	802
PcsI	WCGNNNNNNNCGW	3 cut(s)	54, 99, 153
PctI	GAATGC	1 cut(s)	812
Pfl23II	CGTACG	1 cut(s)	69
PinAI	ACCGGT	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	356, 647
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	3 cut(s)	14, 227, 483
PmaCI	CACGTG	1 cut(s)	831
PmlI	CACGTG	1 cut(s)	831
PpsI	GAGTC	3 cut(s)	14, 227, 483
Ppu21I	YACGTR	1 cut(s)	831
PshAI	GACNNNNGTC	1 cut(s)	240
Psp1406I	AACGTT	1 cut(s)	775
PspCI	CACGTG	1 cut(s)	831
PspLI	CGTACG	1 cut(s)	69
PspN4I	GGNNCC	7 cut(s)	6, 37, 184, 258, 283, 353, 852
PspPI	GGNCC	1 cut(s)	281
PsuI	RGATCY	4 cut(s)	35, 256, 269, 661
PvuI	CGATCG	1 cut(s)	61
RsaI	GTAC	3 cut(s)	71, 96, 852
RsaNI	GTAC	3 cut(s)	70, 95, 851
SaqAI	TTAA	3 cut(s)	413, 422, 453
SatI	GCNGC	2 cut(s)	355, 646
Sau3AI	GATC	8 cut(s)	35, 45, 58, 193, 256, 269, 661, 703
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	3 cut(s)	14, 228, 484
SduI	GDGCHC	1 cut(s)	228
SinI	GGWCC	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SphI	GCATGC	1 cut(s)	802
Sse9I	AATT	3 cut(s)	126, 708, 857
SsiI	CCGC	3 cut(s)	300, 355, 472
SspMI	CTAG	1 cut(s)	587
TaaI	ACNGT	3 cut(s)	14, 230, 396
TaiI	ACGT	8 cut(s)	96, 123, 336, 422, 574, 703, 778, 833
TaqI	TCGA	4 cut(s)	57, 102, 192, 222
TasI	AATT	3 cut(s)	126, 708, 857
TauI	GCSGC	1 cut(s)	357
Tru1I	TTAA	3 cut(s)	413, 422, 453
Tru9I	TTAA	3 cut(s)	413, 422, 453
TscAI	CASTG	3 cut(s)	251, 343, 495
TseFI	GTSAC	5 cut(s)	14, 242, 334, 598, 619
TseI	GCWGC	1 cut(s)	645
Tsp45I	GTSAC	5 cut(s)	14, 242, 334, 598, 619
TspDTI	ATGAA	2 cut(s)	180, 850
TspGWI	ACGGA	1 cut(s)	906
TspRI	CASTG	3 cut(s)	251, 343, 495
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	857
XceI	RCATGY	2 cut(s)	524, 802
XspI	CTAG	1 cut(s)	587
Zsp2I	ATGCAT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.