Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Reverse (-)

52380235 .. 52381751

Gene Structure 1517 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0377500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTCAAGCACATCTCTTGCATCAACTTCTCTAGAAATCAGAGCAATCCCACCGCCATTGATTGGACGAGATGTTGTCGAAAGTGACTCTCTCCAGGCCCCTCCCGATCAGGTTGAGGCAGCCGAGCTCGACCCCAACGACGACGGTAGCGATCTCGAAGAAGACGGTGAAACTTTAGCAAATCCTTTTCATTCTTGCCTTAAGATCCGTTGGATGCGTGCTCAAGAGGGGATGAAGAAGCCTTGTTGGATGTGTGCTCAAGAGGATGAAGAAGCCAGCCAAACACCCCTTACTATTGATGTTGTCACAATCAGTTTTCCTATTTGTTGTATCAATACAATTCAAATGATACTCTGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.14

Weight (kDa)

4.06

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	62
AciI	CCGC	1 cut(s)	53
AclWI	GGATC	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	1 cut(s)	127
AluI	AGCT	1 cut(s)	127
Alw21I	GWGCWC	3 cut(s)	129, 223, 259
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	179
BanII	GRGCYC	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	3 cut(s)	129, 223, 259
BbvI	GCAGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	95
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	355
BfrI	CTTAAG	1 cut(s)	200
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	2 cut(s)	29, 204
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	77
BpuEI	CTTGAG	2 cut(s)	207, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	95
BseGI	GGATG	4 cut(s)	219, 237, 255, 271
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	98
BsiHKAI	GWGCWC	3 cut(s)	129, 223, 259
BslI	CCNNNNNNNGG	1 cut(s)	62
BsnI	GGCC	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	129, 223, 259
Bsp143I	GATC	3 cut(s)	106, 151, 204
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	199
BspTI	CTTAAG	1 cut(s)	200
BssMI	GATC	3 cut(s)	106, 151, 204
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	146, 167
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	219, 277
BstF5I	GGATG	4 cut(s)	219, 237, 255, 271
BstKTI	GATC	3 cut(s)	109, 154, 207
BstMBI	GATC	3 cut(s)	106, 151, 204
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	98
BtsCI	GGATG	4 cut(s)	219, 237, 255, 271
Cac8I	GCNNGC	2 cut(s)	219, 277
Cfr13I	GGNCC	1 cut(s)	97
CspCI	CAANNNNNGTGG	2 cut(s)	39, 74
CviJI	RGCY	6 cut(s)	98, 122, 127, 241, 275, 279
CviKI_1	RGCY	6 cut(s)	98, 122, 127, 241, 275, 279
DpnI	GATC	3 cut(s)	108, 153, 206
DpnII	GATC	3 cut(s)	106, 151, 204
Ecl136II	GAGCTC	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	127
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	4 cut(s)	226, 244, 262, 278
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	86
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	5 cut(s)	32, 104, 155, 224, 260
Hpy99I	CGWCG	2 cut(s)	143, 146
HpyCH4III	ACNGT	2 cut(s)	146, 167
HpyCH4V	TGCA	1 cut(s)	20
Kzo9I	GATC	3 cut(s)	106, 151, 204
LpnPI	CCDG	4 cut(s)	80, 95, 107, 289
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	2 cut(s)	29, 204
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	83, 304
MalI	GATC	3 cut(s)	108, 153, 206
MboI	GATC	3 cut(s)	106, 151, 204
MboII	GAAGA	4 cut(s)	170, 173, 247, 281
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	3 cut(s)	129, 223, 259
MluCI	AATT	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	2 cut(s)	191, 227
MnlI	CCTC	4 cut(s)	109, 111, 220, 256
MseI	TTAA	1 cut(s)	201
MspCI	CTTAAG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
NdeII	GATC	3 cut(s)	106, 151, 204
NlaIV	GGNNCC	1 cut(s)	99
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	2 cut(s)	83, 304
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 147
PflMI	CCANNNNNTGG	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	3 cut(s)	106, 151, 204
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	3 cut(s)	129, 223, 259
SetI	ASST	2 cut(s)	114, 129
SfaNI	GCATC	2 cut(s)	29, 204
SfcI	CTRYAG	1 cut(s)	355
SmlI	CTYRAG	3 cut(s)	200, 222, 258
SmoI	CTYRAG	3 cut(s)	200, 222, 258
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	1 cut(s)	53
SspMI	CTAG	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	146, 167
TaqI	TCGA	3 cut(s)	78, 129, 156
TasI	AATT	1 cut(s)	339
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseFI	GTSAC	2 cut(s)	83, 304
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	2 cut(s)	83, 304
TspDTI	ATGAA	3 cut(s)	179, 248, 282
TspGWI	ACGGA	1 cut(s)	197
Van91I	CCANNNNNTGG	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	200
XbaI	TCTAGA	1 cut(s)	31
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.