Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Forward (+)

28227639 .. 28230631

Gene Structure 2993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG247000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCGATTCTGGGTTTCAATTACAAGGAGGATAGTGGTTATGCTGGAAACCAAGGGAACGAATGGGCTGATGGGTCAGGGACTGTGGCAGCAATGAGTGTGTCCGGTGATAGTGGGGCCGATCGGGCGTCGTATGACGCCTCTTCATCTTTTGACGTACTTGTCGAGATAGGAGAGCACGACATTGAAATCGAACGCTGCTTTGCGCTCAGTGAACCCGAGGCCGAGGAAGGTGTGCTTGCCGGTGCCATCCTCGATCTTGAGGACGAAGTAGCGAGACGAGTCGAGCACGGTCTTGACGGAGGTCGCTGGAGTTCGGATCCTCTAGTCGGATCTCGCACTAGTCCTTGCACGACCTTCTCCGCTCTTGGCGAGCTTCTTGTTGCTACTGGCTACGTCCAAGCGCTCAAGAATAGACGAAAGAGGAAGTTGATTGATGATCTCGTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.0

Weight (kDa)

4.37

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	245
AccBSI	CCGCTC	1 cut(s)	365
AciI	CCGC	1 cut(s)	363
AclWI	GGATC	3 cut(s)	314, 327, 340
AcyI	GRCGYC	2 cut(s)	128, 138
AfaI	GTAC	1 cut(s)	159
AfeI	AGCGCT	1 cut(s)	405
AfiI	CCNNNNNNNGG	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	19, 188
AhlI	ACTAGT	1 cut(s)	341
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
Alw21I	GWGCWC	3 cut(s)	180, 291, 450
Alw26I	GTCTC	1 cut(s)	271
AlwI	GGATC	3 cut(s)	314, 327, 340
AlwNI	CAGNNNCTG	1 cut(s)	83
Ama87I	CYCGRG	1 cut(s)	218
Aor51HI	AGCGCT	1 cut(s)	405
AoxI	GGCC	2 cut(s)	117, 222
ApeKI	GCWGC	2 cut(s)	89, 198
AspLEI	GCGC	2 cut(s)	208, 406
AspS9I	GGNCC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	245
BauI	CACGAG	1 cut(s)	443
Bbv12I	GWGCWC	3 cut(s)	180, 291, 450
BbvI	GCAGC	2 cut(s)	101, 185
BccI	CCATC	2 cut(s)	65, 257
BcoDI	GTCTC	1 cut(s)	271
BcuI	ACTAGT	1 cut(s)	341
BfaI	CTAG	2 cut(s)	326, 342
BfoI	RGCGCY	1 cut(s)	407
BglI	GCCNNNNNGGC	1 cut(s)	125
BisI	GCNGC	2 cut(s)	90, 199
BlsI	GCNGC	2 cut(s)	91, 200
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	3 cut(s)	118, 247, 321
BoxI	GACNNNNGTC	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	331
BpuEI	CTTGAG	2 cut(s)	281, 392
BsaHI	GRCGYC	2 cut(s)	128, 138
BsaJI	CCNNGG	3 cut(s)	52, 219, 225
BsaWI	WCCGGW	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	52, 219, 225
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	394
BseXI	GCAGC	2 cut(s)	101, 185
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	119, 224
BshNI	GGYRCC	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	3 cut(s)	180, 291, 450
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	2 cut(s)	105, 243
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	271
BsmBI	CGTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	2 cut(s)	119, 224
BsoBI	CYCGRG	1 cut(s)	218
Bsp1286I	GDGCHC	3 cut(s)	180, 291, 450
Bsp143I	GATC	5 cut(s)	121, 256, 319, 332, 439
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	2 cut(s)	119, 224
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	118, 247, 321
BspPI	GGATC	3 cut(s)	314, 327, 340
BspT107I	GGYRCC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	3 cut(s)	52, 219, 225
BssMI	GATC	5 cut(s)	121, 256, 319, 332, 439
BssNI	GRCGYC	2 cut(s)	128, 138
BssSI	CACGAG	1 cut(s)	443
BssT1I	CCWWGG	1 cut(s)	52
Bst2BI	CACGAG	1 cut(s)	443
Bst4CI	ACNGT	2 cut(s)	85, 293
Bst6I	CTCTTC	1 cut(s)	148
BstACI	GRCGYC	2 cut(s)	128, 138
BstC8I	GCNNGC	2 cut(s)	240, 374
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	407
BstHHI	GCGC	2 cut(s)	208, 406
BstKTI	GATC	5 cut(s)	124, 259, 322, 335, 442
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	5 cut(s)	121, 256, 319, 332, 439
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstPAI	GACNNNNGTC	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	101, 185
BstX2I	RGATCY	2 cut(s)	319, 332
BstYI	RGATCY	2 cut(s)	319, 332
BsuRI	GGCC	2 cut(s)	119, 224
BtsCI	GGATG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	2 cut(s)	240, 374
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	2 cut(s)	208, 406
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	2 cut(s)	117, 146
Csp6I	GTAC	1 cut(s)	158
CviJI	RGCY	5 cut(s)	68, 119, 224, 376, 393
CviKI_1	RGCY	5 cut(s)	68, 119, 224, 376, 393
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	5 cut(s)	123, 258, 321, 334, 441
DpnII	GATC	5 cut(s)	121, 256, 319, 332, 439
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	52
Eco47III	AGCGCT	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	271
FaiI	YATR	2 cut(s)	42, 135
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	1 cut(s)	94
Fnu4HI	GCNGC	2 cut(s)	90, 199
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	2 cut(s)	90, 199
FspBI	CTAG	2 cut(s)	326, 342
GlaI	GCGC	2 cut(s)	207, 405
GluI	GCNGC	2 cut(s)	90, 199
GsuI	CTGGAG	1 cut(s)	331
HaeII	RGCGCY	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	119, 224
HapII	CCGG	2 cut(s)	105, 243
HgaI	GACGC	2 cut(s)	117, 146
HhaI	GCGC	2 cut(s)	208, 406
Hin1I	GRCGYC	2 cut(s)	128, 138
Hin6I	GCGC	2 cut(s)	206, 404
HinP1I	GCGC	2 cut(s)	206, 404
HinfI	GANTC	2 cut(s)	7, 282
HpaII	CCGG	2 cut(s)	105, 243
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	319, 332, 452
Hpy188III	TCNNGA	4 cut(s)	166, 260, 296, 409
Hpy8I	GTNNAC	1 cut(s)	215
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	224, 367
HpyCH4III	ACNGT	2 cut(s)	85, 293
HpyCH4IV	ACGT	2 cut(s)	156, 396
HpyCH4V	TGCA	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	2 cut(s)	156, 396
Hsp92I	GRCGYC	2 cut(s)	128, 138
HspAI	GCGC	2 cut(s)	206, 404
Kzo9I	GATC	5 cut(s)	121, 256, 319, 332, 439
LpnPI	CCDG	6 cut(s)	30, 63, 118, 256, 295, 375
Lsp1109I	GCAGC	2 cut(s)	101, 185
MaeI	CTAG	2 cut(s)	326, 342
MaeII	ACGT	2 cut(s)	156, 396
MalI	GATC	5 cut(s)	123, 258, 321, 334, 441
MbiI	CCGCTC	1 cut(s)	365
MboI	GATC	5 cut(s)	121, 256, 319, 332, 439
MboII	GAAGA	1 cut(s)	135
MflI	RGATCY	2 cut(s)	319, 332
MhlI	GDGCHC	3 cut(s)	180, 291, 450
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	291
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	9 cut(s)	22, 151, 214, 220, 256, 263, 296, 333, 417
MspI	CCGG	2 cut(s)	105, 243
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeII	GATC	5 cut(s)	121, 256, 319, 332, 439
NlaIV	GGNNCC	3 cut(s)	118, 247, 321
NmeAIII	GCCGAG	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	91, 200
Ple19I	CGATCG	1 cut(s)	124
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PshAI	GACNNNNGTC	1 cut(s)	303
PspN4I	GGNNCC	3 cut(s)	118, 247, 321
PspPI	GGNCC	1 cut(s)	117
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	2 cut(s)	319, 332
PvuI	CGATCG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SatI	GCNGC	2 cut(s)	90, 199
Sau3AI	GATC	5 cut(s)	121, 256, 319, 332, 439
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	291
SduI	GDGCHC	3 cut(s)	180, 291, 450
SetI	ASST	6 cut(s)	159, 235, 307, 359, 378, 399
SmlI	CTYRAG	2 cut(s)	260, 407
SmoI	CTYRAG	2 cut(s)	260, 407
SpeI	ACTAGT	1 cut(s)	341
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	363
SspMI	CTAG	2 cut(s)	326, 342
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	85, 293
TaiI	ACGT	2 cut(s)	159, 399
TaqI	TCGA	5 cut(s)	5, 165, 192, 255, 285
TasI	AATT	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	7
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	2 cut(s)	89, 198
TspDTI	ATGAA	1 cut(s)	135
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	217
XspI	CTAG	2 cut(s)	326, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.