Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015240.1

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Forward (+)

2748 .. 3710

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015240.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

atggatgatggaatggaggagggacaggcaccaaagaagaagcaggagttgattgatagccccgtgctaactgaacgtgataaggcaaagctagatagggtaggattgcctgttgtcactataaatcatgatggtggtggcggctcaaatgtcaaggatctccatctggaaggcttcaatgtttctgtgggtggacgtgatctaattatggatggacttattggaagaaatgctactagaaaaacaacgtttcttaggcacttggctatgcatgctattgatagcattcgccaagtattgcacgtggagcaagaagtggcaggtgatggtacattagccttgcaacgtgttgttaaaactgatattgaaagaacccagcttttggaagaagaagatcgtctccttgatagatggagctggagaaagaagcgggaaagagcaatggagaaattgacaaagatgccattggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

157

Amino Acids

17.75

Weight (kDa)

6.23

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	28
AccB7I	CCANNNNNTGG	1 cut(s)	382
AciI	CCGC	2 cut(s)	141, 430
AclI	AACGTT	1 cut(s)	248
AclWI	GGATC	1 cut(s)	165
AcvI	CACGTG	1 cut(s)	304
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	382
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	2 cut(s)	178, 368
AjiI	CACGTC	1 cut(s)	197
AluBI	AGCT	3 cut(s)	91, 379, 417
AluI	AGCT	3 cut(s)	91, 379, 417
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	28
BarI	GAAGNNNNNNTAC	2 cut(s)	217, 249
BbrPI	CACGTG	1 cut(s)	304
BccI	CCATC	6 cut(s)	2, 125, 171, 206, 320, 405
BcoDI	GTCTC	1 cut(s)	404
BfaI	CTAG	2 cut(s)	92, 237
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	1 cut(s)	142
BlsI	GCNGC	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	30
BmsI	GCATC	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	439
BsaAI	YACGTR	1 cut(s)	304
BsaBI	GATNNNNATC	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	447
Bse8I	GATNNNNATC	1 cut(s)	162
BseGI	GGATG	2 cut(s)	10, 217
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	32
BseYI	CCCAGC	1 cut(s)	375
BshNI	GGYRCC	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	404
BsmBI	CGTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	157, 199, 394
BspACI	CCGC	2 cut(s)	141, 430
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	447
BssMI	GATC	3 cut(s)	157, 199, 394
BstBAI	YACGTR	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	2 cut(s)	10, 217
BstKTI	GATC	3 cut(s)	160, 202, 397
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	3 cut(s)	157, 199, 394
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 307
BstNSI	RCATGY	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	197
BtsCI	GGATG	2 cut(s)	10, 217
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	273
CciI	TCATGA	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	2 cut(s)	128, 272
CviJI	RGCY	8 cut(s)	60, 91, 144, 174, 266, 338, 379, 417
CviKI_1	RGCY	8 cut(s)	60, 91, 144, 174, 266, 338, 379, 417
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	3 cut(s)	159, 201, 396
DpnII	GATC	3 cut(s)	157, 199, 394
Eco72I	CACGTG	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	2 cut(s)	131, 275
FaiI	YATR	5 cut(s)	122, 129, 209, 269, 273
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	2 cut(s)	127, 271
FauI	CCCGC	1 cut(s)	423
Fnu4HI	GCNGC	1 cut(s)	142
FokI	GGATG	2 cut(s)	17, 224
Fsp4HI	GCNGC	1 cut(s)	142
FspBI	CTAG	2 cut(s)	92, 237
GluI	GCNGC	1 cut(s)	142
GsaI	CCCAGC	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	439
Hin1II	CATG	2 cut(s)	131, 275
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188III	TCNNGA	2 cut(s)	128, 167
Hpy8I	GTNNAC	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	164
HpyCH4IV	ACGT	5 cut(s)	76, 196, 248, 303, 346
HpyCH4V	TGCA	3 cut(s)	271, 301, 343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 307
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	5 cut(s)	76, 196, 248, 303, 346
Hsp92II	CATG	2 cut(s)	131, 275
Kzo9I	GATC	3 cut(s)	157, 199, 394
LmnI	GCTCC	2 cut(s)	307, 414
LpnPI	CCDG	7 cut(s)	11, 29, 123, 152, 306, 389, 403
LweI	GCATC	1 cut(s)	450
MaeI	CTAG	2 cut(s)	92, 237
MaeII	ACGT	5 cut(s)	76, 196, 248, 303, 346
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	3 cut(s)	159, 201, 396
MboI	GATC	3 cut(s)	157, 199, 394
MboII	GAAGA	5 cut(s)	49, 237, 398, 401, 404
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	2 cut(s)	204, 449
MnlI	CCTC	2 cut(s)	10, 13
Mph1103I	ATGCAT	1 cut(s)	273
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	132
Mva1269I	GAATGC	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	272, 307
NdeII	GATC	3 cut(s)	157, 199, 394
NlaIII	CATG	2 cut(s)	131, 275
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	273
NspI	RCATGY	1 cut(s)	275
PaeI	GCATGC	1 cut(s)	275
PagI	TCATGA	1 cut(s)	127
PaqCI	CACCTGC	1 cut(s)	311
PctI	GAATGC	1 cut(s)	285
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	1 cut(s)	143
PmaCI	CACGTG	1 cut(s)	304
PmlI	CACGTG	1 cut(s)	304
Ppu21I	YACGTR	1 cut(s)	304
Psp1406I	AACGTT	1 cut(s)	248
PspCI	CACGTG	1 cut(s)	304
PspFI	CCCAGC	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	1 cut(s)	142
Sau3AI	GATC	3 cut(s)	157, 199, 394
SetI	ASST	9 cut(s)	79, 93, 199, 251, 306, 325, 349, 381, 419
SfaNI	GCATC	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	132
SphI	GCATGC	1 cut(s)	275
Sse9I	AATT	2 cut(s)	204, 449
SsiI	CCGC	2 cut(s)	141, 430
SspMI	CTAG	2 cut(s)	92, 237
TaiI	ACGT	5 cut(s)	79, 199, 251, 306, 349
TasI	AATT	2 cut(s)	204, 449
TauI	GCSGC	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	382
XceI	RCATGY	1 cut(s)	275
XspI	CTAG	2 cut(s)	92, 237
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.