Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Forward (+)

6998176 .. 6999062

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00338740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCCAAAGAATGACGCGTCTTTGGGATCGGTCTACGAGTTCTTGAAGCGGTGTCGACTCGCCGTAATCGATCCCTCCGGATCGTTCAGAACTCGAGACCGAGGAAGGTGTGCTTGCGGTGCCATCCTCGATCTTGAGGATGATGTAGCGAGACGAGTCGAGCATGGTCTTGACAGAGGTCGCCGGAGTTCGGATCCTCCGGTCGGATCTCGCACCGGTCCTTGCACGACCTTCTCCGCTCTTGGCGAGCTTCTTGTTGCTACGGCTGCGTCACCGACTTTGATGAGTGCCGCTAGTACGTTAACCGAAAAGTTTGGGAGCCATGGTTTGGTTAAAGCCAAACCAACTGTGTGGAGTCTTGCAGCGCCGGTGAGAATGGATGATGGAATGGATGAGGGGCAGGCACCAAAGAAGAAGCAGGAGTTGATTGATGATCCCGTGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

148

Amino Acids

15.84

Weight (kDa)

7.67

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	119, 403
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccBSI	CCGCTC	1 cut(s)	239
AccI	GTMKAC	2 cut(s)	33, 55
AccII	CGCG	1 cut(s)	17
AccIII	TCCGGA	1 cut(s)	77
AciI	CCGC	4 cut(s)	49, 117, 237, 291
AclWI	GGATC	7 cut(s)	34, 65, 88, 188, 201, 214, 428
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	3 cut(s)	190, 203, 328
AflIII	ACRYGT	1 cut(s)	15
AgeI	ACCGGT	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	46
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	2 cut(s)	90, 145
AlwI	GGATC	7 cut(s)	34, 65, 88, 188, 201, 214, 428
Ama87I	CYCGRG	1 cut(s)	93
Aor13HI	TCCGGA	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	266, 362
AsiGI	ACCGGT	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	264, 382
AvaI	CYCGRG	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	193
BanI	GGYRCC	2 cut(s)	119, 403
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	253, 374
BccI	CCATC	2 cut(s)	131, 377
BceAI	ACGGC	2 cut(s)	47, 279
BcoDI	GTCTC	2 cut(s)	90, 145
BfaI	CTAG	1 cut(s)	294
BfoI	RGCGCY	1 cut(s)	368
BisI	GCNGC	3 cut(s)	267, 291, 363
BlsI	GCNGC	3 cut(s)	268, 292, 364
Bme18I	GGWCC	1 cut(s)	218
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	4 cut(s)	121, 195, 320, 405
BoxI	GACNNNNGTC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	155
Bsa29I	ATCGAT	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	100, 322
BsaWI	WCCGGW	3 cut(s)	77, 199, 215
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 203, 328
Bse118I	RCCGGY	2 cut(s)	215, 367
BseAI	TCCGGA	1 cut(s)	77
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	100, 322
BseGI	GGATG	4 cut(s)	123, 145, 385, 397
BseLI	CCNNNNNNNGG	3 cut(s)	190, 203, 328
BseXI	GCAGC	2 cut(s)	253, 374
Bsh1236I	CGCG	1 cut(s)	17
Bsh1285I	CGRYCG	1 cut(s)	204
BshNI	GGYRCC	2 cut(s)	119, 403
BshTI	ACCGGT	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	69
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	444
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	5 cut(s)	78, 184, 200, 216, 368
BslI	CCNNNNNNNGG	3 cut(s)	190, 203, 328
BsmAI	GTCTC	2 cut(s)	90, 145
BsmBI	CGTCTC	1 cut(s)	145
Bso31I	GGTCTC	1 cut(s)	90
BsoBI	CYCGRG	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp13I	TCCGGA	1 cut(s)	77
Bsp143I	GATC	7 cut(s)	26, 70, 80, 130, 193, 206, 433
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	4 cut(s)	49, 117, 237, 291
BspDI	ATCGAT	1 cut(s)	69
BspEI	TCCGGA	1 cut(s)	77
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	4 cut(s)	121, 195, 320, 405
BspPI	GGATC	7 cut(s)	34, 65, 88, 188, 201, 214, 428
BspT107I	GGYRCC	2 cut(s)	119, 403
BspTNI	GGTCTC	1 cut(s)	90
BsrBI	CCGCTC	1 cut(s)	239
BsrFI	RCCGGY	2 cut(s)	215, 367
BssAI	RCCGGY	2 cut(s)	215, 367
BssECI	CCNNGG	2 cut(s)	100, 322
BssMI	GATC	7 cut(s)	26, 70, 80, 130, 193, 206, 433
BssT1I	CCWWGG	1 cut(s)	322
Bst4CI	ACNGT	1 cut(s)	349
BstC8I	GCNNGC	3 cut(s)	115, 248, 402
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	4 cut(s)	123, 145, 385, 397
BstFNI	CGCG	1 cut(s)	17
BstH2I	RGCGCY	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	7 cut(s)	29, 73, 83, 133, 196, 209, 436
BstMAI	GTCTC	2 cut(s)	90, 145
BstMBI	GATC	7 cut(s)	26, 70, 80, 130, 193, 206, 433
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 266
BstPAI	GACNNNNGTC	1 cut(s)	177
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	253, 374
BstX2I	RGATCY	2 cut(s)	193, 206
BstXI	CCANNNNNNTGG	1 cut(s)	351
BstYI	RGATCY	2 cut(s)	193, 206
Bsu15I	ATCGAT	1 cut(s)	69
BsuTUI	ATCGAT	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	4 cut(s)	123, 145, 385, 397
Cac8I	GCNNGC	3 cut(s)	115, 248, 402
CfoI	GCGC	1 cut(s)	367
Cfr10I	RCCGGY	2 cut(s)	215, 367
Cfr13I	GGNCC	1 cut(s)	218
ClaI	ATCGAT	1 cut(s)	69
CseI	GACGC	3 cut(s)	6, 23, 258
Csp6I	GTAC	1 cut(s)	297
CspAI	ACCGGT	1 cut(s)	215
CviAII	CATG	2 cut(s)	164, 323
CviJI	RGCY	4 cut(s)	250, 266, 321, 338
CviKI_1	RGCY	4 cut(s)	250, 266, 321, 338
CviQI	GTAC	1 cut(s)	297
DpnI	GATC	7 cut(s)	28, 72, 82, 132, 195, 208, 435
DpnII	GATC	7 cut(s)	26, 70, 80, 130, 193, 206, 433
Eco130I	CCWWGG	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	145
FaeI	CATG	2 cut(s)	167, 326
FaiI	YATR	2 cut(s)	165, 324
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FatI	CATG	2 cut(s)	163, 322
FblI	GTMKAC	2 cut(s)	33, 55
Fnu4HI	GCNGC	3 cut(s)	267, 291, 363
FokI	GGATG	4 cut(s)	110, 152, 392, 404
Fsp4HI	GCNGC	3 cut(s)	267, 291, 363
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	3 cut(s)	267, 291, 363
HaeII	RGCGCY	1 cut(s)	368
HapII	CCGG	5 cut(s)	78, 184, 200, 216, 368
HgaI	GACGC	3 cut(s)	6, 23, 258
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	2 cut(s)	167, 326
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HincII	GTYRAC	2 cut(s)	56, 303
HindII	GTYRAC	2 cut(s)	56, 303
HinfI	GANTC	3 cut(s)	57, 156, 355
HpaI	GTTAAC	1 cut(s)	303
HpaII	CCGG	5 cut(s)	78, 184, 200, 216, 368
HphI	GGTGA	2 cut(s)	264, 382
Hpy166II	GTNNAC	3 cut(s)	34, 56, 303
Hpy188I	TCNGA	4 cut(s)	89, 193, 206, 446
Hpy188III	TCNNGA	5 cut(s)	43, 78, 95, 134, 170
Hpy8I	GTNNAC	3 cut(s)	34, 56, 303
HpyAV	CCTTC	2 cut(s)	99, 241
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	2 cut(s)	225, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 266
HpySE526I	ACGT	1 cut(s)	299
Hsp92II	CATG	2 cut(s)	167, 326
HspAI	GCGC	1 cut(s)	365
Kpn2I	TCCGGA	1 cut(s)	77
KspAI	GTTAAC	1 cut(s)	303
Kzo9I	GATC	7 cut(s)	26, 70, 80, 130, 193, 206, 433
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	7 cut(s)	91, 197, 213, 229, 381, 386, 404
Lsp1109I	GCAGC	2 cut(s)	253, 374
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	7 cut(s)	28, 72, 82, 132, 195, 208, 435
MbiI	CCGCTC	1 cut(s)	239
MboI	GATC	7 cut(s)	26, 70, 80, 130, 193, 206, 433
MboII	GAAGA	1 cut(s)	424
MflI	RGATCY	2 cut(s)	193, 206
MhlI	GDGCHC	1 cut(s)	444
MluI	ACGCGT	1 cut(s)	15
MlyI	GAGTC	3 cut(s)	51, 165, 364
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	7 cut(s)	85, 95, 130, 137, 170, 207, 388
MroI	TCCGGA	1 cut(s)	77
MseI	TTAA	2 cut(s)	302, 333
MspI	CCGG	5 cut(s)	78, 184, 200, 216, 368
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	119, 266
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	7 cut(s)	26, 70, 80, 130, 193, 206, 433
NlaIII	CATG	2 cut(s)	167, 326
NlaIV	GGNNCC	4 cut(s)	121, 195, 320, 405
NmuCI	GTSAC	1 cut(s)	270
PaeR7I	CTCGAG	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PflMI	CCANNNNNTGG	1 cut(s)	328
PinAI	ACCGGT	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	268, 292, 364
PleI	GAGTC	3 cut(s)	51, 164, 363
PpsI	GAGTC	3 cut(s)	51, 164, 363
PshAI	GACNNNNGTC	1 cut(s)	177
PspN4I	GGNNCC	4 cut(s)	121, 195, 320, 405
PspPI	GGNCC	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	193, 206
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SalI	GTCGAC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	302, 333
SatI	GCNGC	3 cut(s)	267, 291, 363
Sau3AI	GATC	7 cut(s)	26, 70, 80, 130, 193, 206, 433
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	3 cut(s)	51, 165, 364
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	5 cut(s)	110, 181, 233, 252, 302
Sfr274I	CTCGAG	1 cut(s)	93
SgrAI	CRCCGGYG	1 cut(s)	367
SinI	GGWCC	1 cut(s)	218
SlaI	CTCGAG	1 cut(s)	93
SmlI	CTYRAG	2 cut(s)	93, 134
SmoI	CTYRAG	2 cut(s)	93, 134
SsiI	CCGC	4 cut(s)	49, 117, 237, 291
SspMI	CTAG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	5 cut(s)	55, 69, 94, 129, 159
TaqII	GACCGA	2 cut(s)	19, 114
TauI	GCSGC	1 cut(s)	293
Tru1I	TTAA	2 cut(s)	302, 333
Tru9I	TTAA	2 cut(s)	302, 333
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	2 cut(s)	266, 362
Tsp45I	GTSAC	1 cut(s)	270
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	93
XmiI	GTMKAC	2 cut(s)	33, 55
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.