Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Reverse (-)

48633717 .. 48634945

Gene Structure 1229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00201150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCCAAAGAACGACGCGTCTTTGGGATCGGTCTACGAGTTCTTGAAGCGGTGCCGACTCGCCGGAGAGCGCGACATTGAAATCGAACGCCGCTTTGCGCTCGGTGAACCCGAGGCCGAGGAAGGTGTGCTTGCCGGTGCCATCCTCGATCTTGAGGACGAAGTAGCGAGACGAGTCGAGCACGGTCTTGACGGAGGTCGGCCGGAGTTTGGATCTTCCGGTCGGATCTCGCATCGGTCCTTGCACGACCTTCTCCGCTCTCGGCGACCTTCTCGCCCTTGGCGAGCTTCTTGTTGCTACGGTCGCGTTTGCAATACGTTAACCGAAAAGTTTGGGAAGCATGGTTTGGTTAAAGCCAAACCAACGTGTGGAGTGCGTGCGCGCCAAGTGAGAATGGATGATGGAATGGATGAGGGCAGGCACCAAAGAAGAAGCGAGGAGTTGATTGATGATCCCATGCTCGAACGTGATATGGCAAAGCTAGATAGGCTAAAGAGGAAGGATGAGCGCCAAAGAGAGGCATTGGACCAGTTGGGACATGTGGATGACATTGTAAATGACCTTAGTATGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

191

Amino Acids

21.8

Weight (kDa)

6.61

Isoelectric Point (pI)

55.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	51, 137, 420
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	4 cut(s)	17, 72, 306, 382
AciI	CCGC	3 cut(s)	49, 91, 256
AclWI	GGATC	4 cut(s)	34, 220, 233, 446
AcoI	YGGCCR	1 cut(s)	200
AfiI	CCNNNNNNNGG	3 cut(s)	209, 368, 517
AflIII	ACRYGT	3 cut(s)	15, 365, 538
AgsI	TTSAA	2 cut(s)	46, 80
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	2 cut(s)	287, 481
AluI	AGCT	2 cut(s)	287, 481
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	4 cut(s)	34, 220, 233, 446
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	2 cut(s)	114, 200
AspLEI	GCGC	5 cut(s)	72, 100, 382, 384, 510
AspS9I	GGNCC	2 cut(s)	237, 526
AsuHPI	GGTGA	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	237, 526
BanI	GGYRCC	3 cut(s)	51, 137, 420
Bbv12I	GWGCWC	1 cut(s)	183
BccI	CCATC	2 cut(s)	149, 395
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	482
BfoI	RGCGCY	1 cut(s)	511
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme18I	GGWCC	2 cut(s)	237, 526
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	237, 526
BmiI	GGNNCC	3 cut(s)	53, 139, 422
BmsI	GCATC	1 cut(s)	241
BoxI	GACNNNNGTC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	111, 117, 278
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 368, 517
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	1 cut(s)	529
BseDI	CCNNGG	3 cut(s)	111, 117, 278
BseGI	GGATG	5 cut(s)	141, 403, 415, 508, 550
BseLI	CCNNNNNNNGG	3 cut(s)	209, 368, 517
BseNI	ACTGG	1 cut(s)	529
BsePI	GCGCGC	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	452
BseX3I	CGGCCG	1 cut(s)	200
Bsh1236I	CGCG	4 cut(s)	17, 72, 306, 382
Bsh1285I	CGRYCG	3 cut(s)	203, 223, 304
BshFI	GGCC	2 cut(s)	116, 202
BshNI	GGYRCC	3 cut(s)	51, 137, 420
BsiEI	CGRYCG	3 cut(s)	203, 223, 304
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	4 cut(s)	63, 135, 203, 219
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	3 cut(s)	209, 368, 517
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	549
BsnI	GGCC	2 cut(s)	116, 202
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	5 cut(s)	26, 148, 212, 225, 451
BspACI	CCGC	3 cut(s)	49, 91, 256
BspANI	GGCC	2 cut(s)	116, 202
BspFNI	CGCG	4 cut(s)	17, 72, 306, 382
BspLI	GGNNCC	3 cut(s)	53, 139, 422
BspPI	GGATC	4 cut(s)	34, 220, 233, 446
BspT107I	GGYRCC	3 cut(s)	51, 137, 420
BsrBI	CCGCTC	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	3 cut(s)	111, 117, 278
BssHII	GCGCGC	1 cut(s)	380
BssMI	GATC	5 cut(s)	26, 148, 212, 225, 451
BssT1I	CCWWGG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	185, 302
BstC8I	GCNNGC	5 cut(s)	132, 285, 378, 382, 419
BstDEI	CTNAG	1 cut(s)	563
BstF5I	GGATG	5 cut(s)	141, 403, 415, 508, 550
BstFNI	CGCG	4 cut(s)	17, 72, 306, 382
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	5 cut(s)	72, 100, 382, 384, 510
BstKTI	GATC	5 cut(s)	29, 151, 215, 228, 454
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	5 cut(s)	26, 148, 212, 225, 451
BstMCI	CGRYCG	3 cut(s)	203, 223, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	303, 487
BstNSI	RCATGY	1 cut(s)	542
BstPAI	GACNNNNGTC	1 cut(s)	195
BstUI	CGCG	4 cut(s)	17, 72, 306, 382
BstX2I	RGATCY	2 cut(s)	212, 225
BstYI	RGATCY	2 cut(s)	212, 225
BstZI	CGGCCG	1 cut(s)	200
BsuRI	GGCC	2 cut(s)	116, 202
BtsCI	GGATG	5 cut(s)	141, 403, 415, 508, 550
Cac8I	GCNNGC	5 cut(s)	132, 285, 378, 382, 419
CfoI	GCGC	5 cut(s)	72, 100, 382, 384, 510
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	237, 526
CseI	GACGC	2 cut(s)	6, 23
CviAII	CATG	3 cut(s)	341, 457, 539
CviJI	RGCY	6 cut(s)	116, 202, 287, 356, 481, 490
CviKI_1	RGCY	6 cut(s)	116, 202, 287, 356, 481, 490
DdeI	CTNAG	1 cut(s)	563
DpnI	GATC	5 cut(s)	28, 150, 214, 227, 453
DpnII	GATC	5 cut(s)	26, 148, 212, 225, 451
EaeI	YGGCCR	1 cut(s)	200
EagI	CGGCCG	1 cut(s)	200
EclXI	CGGCCG	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	278
Eco47I	GGWCC	2 cut(s)	237, 526
Eco52I	CGGCCG	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	278
ErhI	CCWWGG	1 cut(s)	278
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	3 cut(s)	344, 460, 542
FaiI	YATR	5 cut(s)	342, 458, 473, 540, 569
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	3 cut(s)	340, 456, 538
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	91
FokI	GGATG	5 cut(s)	128, 410, 422, 515, 557
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	482
GlaI	GCGC	5 cut(s)	71, 99, 381, 383, 509
GluI	GCNGC	1 cut(s)	91
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	2 cut(s)	116, 202
HapII	CCGG	4 cut(s)	63, 135, 203, 219
HgaI	GACGC	2 cut(s)	6, 23
HhaI	GCGC	5 cut(s)	72, 100, 382, 384, 510
Hin1II	CATG	3 cut(s)	344, 460, 542
Hin6I	GCGC	5 cut(s)	70, 98, 380, 382, 508
HinP1I	GCGC	5 cut(s)	70, 98, 380, 382, 508
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	2 cut(s)	57, 174
HpaI	GTTAAC	1 cut(s)	321
HpaII	CCGG	4 cut(s)	63, 135, 203, 219
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	3 cut(s)	34, 107, 321
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	3 cut(s)	43, 152, 188
Hpy8I	GTNNAC	3 cut(s)	34, 107, 321
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	4 cut(s)	116, 260, 279, 493
HpyCH4III	ACNGT	2 cut(s)	185, 302
HpyCH4IV	ACGT	3 cut(s)	317, 365, 466
HpyCH4V	TGCA	2 cut(s)	244, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	303, 487
HpyF3I	CTNAG	1 cut(s)	563
HpySE526I	ACGT	3 cut(s)	317, 365, 466
Hsp92II	CATG	3 cut(s)	344, 460, 542
HspAI	GCGC	5 cut(s)	70, 98, 380, 382, 508
KspAI	GTTAAC	1 cut(s)	321
Kzo9I	GATC	5 cut(s)	26, 148, 212, 225, 451
LpnPI	CCDG	6 cut(s)	76, 148, 216, 232, 403, 542
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	482
MaeII	ACGT	3 cut(s)	317, 365, 466
MalI	GATC	5 cut(s)	28, 150, 214, 227, 453
MbiI	CCGCTC	1 cut(s)	258
MboI	GATC	5 cut(s)	26, 148, 212, 225, 451
MboII	GAAGA	2 cut(s)	207, 441
MflI	RGATCY	2 cut(s)	212, 225
MhlI	GDGCHC	1 cut(s)	183
MluI	ACGCGT	1 cut(s)	15
MlyI	GAGTC	2 cut(s)	51, 183
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	9 cut(s)	106, 112, 148, 155, 188, 406, 430, 489, 511
MseI	TTAA	2 cut(s)	320, 351
MslI	CAYNNNNRTG	1 cut(s)	543
MspI	CCGG	4 cut(s)	63, 135, 203, 219
MvnI	CGCG	4 cut(s)	17, 72, 306, 382
MwoI	GCNNNNNNNGC	2 cut(s)	303, 487
NdeII	GATC	5 cut(s)	26, 148, 212, 225, 451
NlaIII	CATG	3 cut(s)	344, 460, 542
NlaIV	GGNNCC	3 cut(s)	53, 139, 422
NmeAIII	GCCGAG	2 cut(s)	142, 241
NspI	RCATGY	1 cut(s)	542
PauI	GCGCGC	1 cut(s)	380
PciI	ACATGT	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	2 cut(s)	108, 280
PflMI	CCANNNNNTGG	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	92
PleI	GAGTC	2 cut(s)	51, 182
PpsI	GAGTC	2 cut(s)	51, 182
PscI	ACATGT	1 cut(s)	538
PshAI	GACNNNNGTC	1 cut(s)	195
PspN4I	GGNNCC	3 cut(s)	53, 139, 422
PspPI	GGNCC	2 cut(s)	237, 526
PsuI	RGATCY	2 cut(s)	212, 225
PteI	GCGCGC	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	543
SaqAI	TTAA	2 cut(s)	320, 351
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	5 cut(s)	26, 148, 212, 225, 451
Sau96I	GGNCC	2 cut(s)	237, 526
SchI	GAGTC	2 cut(s)	51, 183
SduI	GDGCHC	1 cut(s)	183
SfaNI	GCATC	1 cut(s)	241
SinI	GGWCC	2 cut(s)	237, 526
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SsiI	CCGC	3 cut(s)	49, 91, 256
SspMI	CTAG	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	2 cut(s)	185, 302
TaiI	ACGT	3 cut(s)	320, 368, 469
TaqI	TCGA	4 cut(s)	84, 147, 177, 462
TaqII	GACCGA	2 cut(s)	19, 225
TauI	GCSGC	1 cut(s)	93
Tru1I	TTAA	2 cut(s)	320, 351
Tru9I	TTAA	2 cut(s)	320, 351
TspGWI	ACGGA	1 cut(s)	207
Van91I	CCANNNNNTGG	1 cut(s)	368
VpaK11BI	GGWCC	2 cut(s)	237, 526
XceI	RCATGY	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.