Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Reverse (-)

52816983 .. 52817689

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG298600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGCTTGCTGGTGCCATCCCCGATCTTAAGGACGAAGTAGCGAGACGAGTCGAGCACGGTCTTGACGGAGGTCACTGGAGTTTGGATCCTCTAGTCGGATCTCGCACCGGTCCCTGCACAACCTTCTCCGCTCTCAGCGAGCTTCTCGTCGCTACTGGCAGCGTCACTGACTTTGATGGGTGCCGCTCGGTTTACATTACGTTAACCGAAAAGTTTGGGAAGCATGATTTGGTTAAAGCCAAACAGGTTGTGCGGAGTCTTGTGGCGCCAATGAGAATGGATGAGGGACAGGCACCAAAGAAGAAGCAGGAGTTGATTGATAGCCCCGTGCTAACTGAACGTGATAAGGCAAAGCTAGATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

121

Amino Acids

13.22

Weight (kDa)

6.83

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	11, 180, 265, 292
AccBSI	CCGCTC	2 cut(s)	131, 186
AciI	CCGC	3 cut(s)	129, 184, 253
AclWI	GGATC	3 cut(s)	80, 93, 106
AcyI	GRCGYC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflII	CTTAAG	1 cut(s)	26
AgeI	ACCGGT	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	2 cut(s)	142, 355
AluI	AGCT	2 cut(s)	142, 355
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	3 cut(s)	80, 93, 106
ApeKI	GCWGC	1 cut(s)	159
AsiGI	ACCGGT	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	110
BamHI	GGATCC	1 cut(s)	85
BanI	GGYRCC	4 cut(s)	11, 180, 265, 292
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	2 cut(s)	23, 170
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	2 cut(s)	92, 356
BfoI	RGCGCY	1 cut(s)	269
BfrI	CTTAAG	1 cut(s)	26
BisI	GCNGC	2 cut(s)	160, 184
BlsI	GCNGC	2 cut(s)	161, 185
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	6 cut(s)	13, 87, 112, 182, 267, 294
BoxI	GACNNNNGTC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	80, 160
BseGI	GGATG	2 cut(s)	15, 286
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	148
BseNI	ACTGG	2 cut(s)	80, 160
BseXI	GCAGC	1 cut(s)	171
BsgI	GTGCAG	1 cut(s)	100
BshNI	GGYRCC	4 cut(s)	11, 180, 265, 292
BshTI	ACCGGT	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	2 cut(s)	96, 300
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	2 cut(s)	96, 300
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	22, 85, 98
BspACI	CCGC	3 cut(s)	129, 184, 253
BspCNI	CTCAG	1 cut(s)	147
BspLI	GGNNCC	6 cut(s)	13, 87, 112, 182, 267, 294
BspPI	GGATC	3 cut(s)	80, 93, 106
BspT107I	GGYRCC	4 cut(s)	11, 180, 265, 292
BspTI	CTTAAG	1 cut(s)	26
BsrBI	CCGCTC	2 cut(s)	131, 186
BsrFI	RCCGGY	1 cut(s)	107
BsrI	ACTGG	2 cut(s)	80, 160
BssAI	RCCGGY	1 cut(s)	107
BssMI	GATC	3 cut(s)	22, 85, 98
BssNI	GRCGYC	1 cut(s)	266
Bst4CI	ACNGT	1 cut(s)	59
BstACI	GRCGYC	1 cut(s)	266
BstAFI	CTTAAG	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	6, 140
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	2 cut(s)	15, 286
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	3 cut(s)	25, 88, 101
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	3 cut(s)	22, 85, 98
BstPAI	GACNNNNGTC	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	171
BstX2I	RGATCY	2 cut(s)	85, 98
BstYI	RGATCY	2 cut(s)	85, 98
BtsCI	GGATG	2 cut(s)	15, 286
BtsIMutI	CAGTG	2 cut(s)	73, 165
Cac8I	GCNNGC	2 cut(s)	6, 140
CfoI	GCGC	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	1 cut(s)	151
CspAI	ACCGGT	1 cut(s)	107
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	4 cut(s)	142, 239, 324, 355
CviKI_1	RGCY	4 cut(s)	142, 239, 324, 355
DdeI	CTNAG	1 cut(s)	134
DinI	GGCGCC	1 cut(s)	267
DpnI	GATC	3 cut(s)	24, 87, 100
DpnII	GATC	3 cut(s)	22, 85, 98
Eco47I	GGWCC	1 cut(s)	110
EgeI	GGCGCC	1 cut(s)	267
EheI	GGCGCC	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	1 cut(s)	227
FaiI	YATR	1 cut(s)	225
FaqI	GGGAC	2 cut(s)	96, 300
FatI	CATG	1 cut(s)	223
Fnu4HI	GCNGC	2 cut(s)	160, 184
FokI	GGATG	2 cut(s)	2, 293
Fsp4HI	GCNGC	2 cut(s)	160, 184
FspBI	CTAG	2 cut(s)	92, 356
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	2 cut(s)	160, 184
GsuI	CTGGAG	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	269
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	1 cut(s)	268
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	227
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	2 cut(s)	48, 256
HpaI	GTTAAC	1 cut(s)	204
HpaII	CCGG	1 cut(s)	108
Hpy166II	GTNNAC	2 cut(s)	193, 204
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	2 cut(s)	193, 204
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4IV	ACGT	2 cut(s)	200, 340
HpyCH4V	TGCA	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	2 cut(s)	200, 340
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	227
HspAI	GCGC	1 cut(s)	266
KasI	GGCGCC	1 cut(s)	265
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	22, 85, 98
LpnPI	CCDG	7 cut(s)	61, 121, 127, 141, 230, 275, 293
Lsp1109I	GCAGC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	92, 356
MaeII	ACGT	2 cut(s)	200, 340
MaeIII	GTNAC	2 cut(s)	71, 163
MalI	GATC	3 cut(s)	24, 87, 100
MbiI	CCGCTC	2 cut(s)	131, 186
MboI	GATC	3 cut(s)	22, 85, 98
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	2 cut(s)	85, 98
MhlI	GDGCHC	1 cut(s)	57
Mly113I	GGCGCC	1 cut(s)	266
MlyI	GAGTC	2 cut(s)	57, 265
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	3 cut(s)	62, 99, 277
MseI	TTAA	3 cut(s)	27, 203, 234
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	1 cut(s)	108
NarI	GGCGCC	1 cut(s)	266
NdeII	GATC	3 cut(s)	22, 85, 98
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	6 cut(s)	13, 87, 112, 182, 267, 294
NmuCI	GTSAC	2 cut(s)	71, 163
PinAI	ACCGGT	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	161, 185
PleI	GAGTC	2 cut(s)	56, 264
PluTI	GGCGCC	1 cut(s)	269
PpsI	GAGTC	2 cut(s)	56, 264
PshAI	GACNNNNGTC	1 cut(s)	69
PspN4I	GGNNCC	6 cut(s)	13, 87, 112, 182, 267, 294
PspPI	GGNCC	1 cut(s)	110
PsuI	RGATCY	2 cut(s)	85, 98
SaqAI	TTAA	3 cut(s)	27, 203, 234
SatI	GCNGC	2 cut(s)	160, 184
Sau3AI	GATC	3 cut(s)	22, 85, 98
Sau96I	GGNCC	1 cut(s)	110
SchI	GAGTC	2 cut(s)	57, 265
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	8 cut(s)	73, 125, 144, 203, 249, 343, 357, 365
SfoI	GGCGCC	1 cut(s)	267
SinI	GGWCC	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
SsiI	CCGC	3 cut(s)	129, 184, 253
SspDI	GGCGCC	1 cut(s)	265
SspMI	CTAG	2 cut(s)	92, 356
TaaI	ACNGT	1 cut(s)	59
TaiI	ACGT	2 cut(s)	203, 343
TaqI	TCGA	1 cut(s)	51
TauI	GCSGC	1 cut(s)	186
Tru1I	TTAA	3 cut(s)	27, 203, 234
Tru9I	TTAA	3 cut(s)	27, 203, 234
TscAI	CASTG	2 cut(s)	80, 172
TseFI	GTSAC	2 cut(s)	71, 163
TseI	GCWGC	1 cut(s)	159
Tsp45I	GTSAC	2 cut(s)	71, 163
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	2 cut(s)	80, 172
Vha464I	CTTAAG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	110
XspI	CTAG	2 cut(s)	92, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.