Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000370.1

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Reverse (-)

137856 .. 138448

Gene Structure 593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000370.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggaagcgggtagggcaggattgcctatggtcactataaatcatgatggtggtggcggctcaaatgtcaaggatctccgtctggaaggcgtcaatgtttctgtgggtggacgtgatctaattatggatggacttattggaagaaatgctactggaaaaacaatgtttcttaggcacttggctatgcatgccattgatagcattcgccaagtattacacatggagcaagaagtggcaggtgatgatacatcagccttgcaatgtgttgttaaaactgatattgaaagaacccagcttttggaagaagaagatcgtctccttgctcaacaggttgaattcttatttactcatgtatttattctaaattcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

123

Amino Acids

13.48

Weight (kDa)

5.07

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	227
AccB7I	CCANNNNNTGG	1 cut(s)	298
AciI	CCGC	2 cut(s)	8, 57
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	2 cut(s)	335, 364
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	2 cut(s)	284, 335
AjiI	CACGTC	1 cut(s)	113
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	1 cut(s)	81
ApoI	RAATTY	2 cut(s)	335, 364
AsuHPI	GGTGA	1 cut(s)	251
BarI	GAAGNNNNNNTAC	2 cut(s)	133, 165
BccI	CCATC	2 cut(s)	41, 122
BcoDI	GTCTC	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
BmgBI	CACGTC	1 cut(s)	113
BsaHI	GRCGYC	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMI	GCAATG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	157
BseYI	CCCAGC	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	320
BsmBI	CGTCTC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	73, 115, 310
BspACI	CCGC	2 cut(s)	8, 57
BspHI	TCATGA	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	157
BssMI	GATC	3 cut(s)	73, 115, 310
BssNI	GRCGYC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	133
BstKTI	GATC	3 cut(s)	76, 118, 313
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	3 cut(s)	73, 115, 310
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 188
BstNSI	RCATGY	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BtrI	CACGTC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	227
Cac8I	GCNNGC	1 cut(s)	189
CciI	TCATGA	1 cut(s)	43
CseI	GACGC	1 cut(s)	79
CviAII	CATG	4 cut(s)	44, 188, 220, 350
CviJI	RGCY	4 cut(s)	60, 182, 254, 295
CviKI_1	RGCY	4 cut(s)	60, 182, 254, 295
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	3 cut(s)	75, 117, 312
DpnII	GATC	3 cut(s)	73, 115, 310
EcoRI	GAATTC	1 cut(s)	335
EcoT22I	ATGCAT	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	320
FaeI	CATG	4 cut(s)	47, 191, 223, 353
FaiI	YATR	8 cut(s)	29, 38, 45, 125, 185, 189, 221, 351
FatI	CATG	4 cut(s)	43, 187, 219, 349
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	58
GsaI	CCCAGC	1 cut(s)	295
HgaI	GACGC	1 cut(s)	79
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	4 cut(s)	47, 191, 223, 353
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188III	TCNNGA	2 cut(s)	44, 83
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	187, 259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 188
HpyF3I	CTNAG	1 cut(s)	170
HpySE526I	ACGT	1 cut(s)	112
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	47, 191, 223, 353
Kzo9I	GATC	3 cut(s)	73, 115, 310
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	6 cut(s)	3, 68, 138, 222, 305, 314
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	3 cut(s)	75, 117, 312
MboI	GATC	3 cut(s)	73, 115, 310
MboII	GAAGA	4 cut(s)	153, 314, 317, 320
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	3 cut(s)	120, 335, 364
Mph1103I	ATGCAT	1 cut(s)	189
MseI	TTAA	2 cut(s)	270, 370
MslI	CAYNNNNRTG	1 cut(s)	48
Mva1269I	GAATGC	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	14, 188
NdeII	GATC	3 cut(s)	73, 115, 310
NlaIII	CATG	4 cut(s)	47, 191, 223, 353
NmuCI	GTSAC	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	189
NspI	RCATGY	1 cut(s)	191
PaeI	GCATGC	1 cut(s)	191
PagI	TCATGA	1 cut(s)	43
PaqCI	CACCTGC	1 cut(s)	227
PctI	GAATGC	1 cut(s)	201
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	270, 370
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	3 cut(s)	73, 115, 310
SetI	ASST	4 cut(s)	115, 241, 297, 333
SmiMI	CAYNNNNRTG	1 cut(s)	48
SphI	GCATGC	1 cut(s)	191
Sse9I	AATT	3 cut(s)	120, 335, 364
SsiI	CCGC	2 cut(s)	8, 57
TaiI	ACGT	1 cut(s)	115
TasI	AATT	3 cut(s)	120, 335, 364
TauI	GCSGC	1 cut(s)	60
Tru1I	TTAA	2 cut(s)	270, 370
Tru9I	TTAA	2 cut(s)	270, 370
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	68
Van91I	CCANNNNNTGG	1 cut(s)	298
XapI	RAATTY	2 cut(s)	335, 364
XceI	RCATGY	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.