Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Reverse (-)

18950781 .. 18951691

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007608

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCCAAAGAACGACGCCTCTTTGGGATCGGTCTACGAGTTCTTGAAGCGGTGCCGACTCGCCGGTAATCGGATCCCTCCAGATCGTTCAGGCCGATACGACGCCTCTTCATCTTTTGACGTACTTGTCGAGATAGGAGAGCACGACATTGAAATCGAACGCTGCTTTGAGCTCAGTGAACCCGAGGCCGAGGAAGGTGTGCTTGCCGGTGCCATCCTCGATCTTGAGGACGAAGTAGCGAGACGAGTCGAGCACGGTCTTGACGGAGGTCGCTGGAGTTCCGATCTCGCACCGATCCTTGCACAACCTTCTCCGCTCTCGGCGACCTTCTCCGCTCTCGGCGACCTTCTCCGCTCTCGGCGAGCTTCTTGTTGCTACTGGCTACTGCCAGTGAGAATGGATGATGGAATGGATGAGGGGCAGGCACCAAAGAAGAAGCAGGAGTTGATTGATGATCTCATGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

156

Amino Acids

17.18

Weight (kDa)

4.57

Isoelectric Point (pI)

69.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AccB1I	GGYRCC	3 cut(s)	51, 209, 424
AccBSI	CCGCTC	3 cut(s)	316, 335, 354
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	4 cut(s)	49, 314, 333, 352
AclWI	GGATC	4 cut(s)	34, 67, 80, 289
AcyI	GRCGYC	2 cut(s)	15, 102
AfaI	GTAC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	2 cut(s)	46, 152
AluBI	AGCT	2 cut(s)	172, 365
AluI	AGCT	2 cut(s)	172, 365
Alw21I	GWGCWC	3 cut(s)	144, 174, 255
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	4 cut(s)	34, 67, 80, 289
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	2 cut(s)	91, 186
ApeKI	GCWGC	1 cut(s)	162
AvaI	CYCGRG	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	72
BanI	GGYRCC	3 cut(s)	51, 209, 424
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	3 cut(s)	144, 174, 255
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	2 cut(s)	221, 398
BcoDI	GTCTC	1 cut(s)	235
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	182
BmiI	GGNNCC	4 cut(s)	53, 74, 211, 426
BoxI	GACNNNNGTC	1 cut(s)	267
BpmI	CTGGAG	2 cut(s)	63, 295
BpuEI	CTTGAG	1 cut(s)	245
BsaHI	GRCGYC	2 cut(s)	15, 102
BsaJI	CCNNGG	2 cut(s)	183, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse118I	RCCGGY	2 cut(s)	62, 206
Bse1I	ACTGG	2 cut(s)	383, 389
BseDI	CCNNGG	2 cut(s)	183, 189
BseGI	GGATG	3 cut(s)	213, 406, 418
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	187
BseNI	ACTGG	2 cut(s)	383, 389
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	2 cut(s)	93, 188
BshNI	GGYRCC	3 cut(s)	51, 209, 424
BsiHKAI	GWGCWC	3 cut(s)	144, 174, 255
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	63, 207
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	235
BsmBI	CGTCTC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	93, 188
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	3 cut(s)	144, 174, 255
Bsp143I	GATC	7 cut(s)	26, 72, 82, 220, 283, 294, 454
BspACI	CCGC	4 cut(s)	49, 314, 333, 352
BspANI	GGCC	2 cut(s)	93, 188
BspCNI	CTCAG	1 cut(s)	186
BspLI	GGNNCC	4 cut(s)	53, 74, 211, 426
BspPI	GGATC	4 cut(s)	34, 67, 80, 289
BspT107I	GGYRCC	3 cut(s)	51, 209, 424
BsrBI	CCGCTC	3 cut(s)	316, 335, 354
BsrFI	RCCGGY	2 cut(s)	62, 206
BsrI	ACTGG	2 cut(s)	383, 389
BssAI	RCCGGY	2 cut(s)	62, 206
BssECI	CCNNGG	2 cut(s)	183, 189
BssMI	GATC	7 cut(s)	26, 72, 82, 220, 283, 294, 454
BssNI	GRCGYC	2 cut(s)	15, 102
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	112
BstACI	GRCGYC	2 cut(s)	15, 102
BstC8I	GCNNGC	3 cut(s)	204, 363, 423
BstDEI	CTNAG	1 cut(s)	173
BstF5I	GGATG	3 cut(s)	213, 406, 418
BstKTI	GATC	7 cut(s)	29, 75, 85, 223, 286, 297, 457
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	7 cut(s)	26, 72, 82, 220, 283, 294, 454
BstPAI	GACNNNNGTC	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	93, 188
BtsCI	GGATG	3 cut(s)	213, 406, 418
BtsIMutI	CAGTG	2 cut(s)	181, 396
Cac8I	GCNNGC	3 cut(s)	204, 363, 423
Cfr10I	RCCGGY	2 cut(s)	62, 206
CseI	GACGC	2 cut(s)	23, 110
Csp6I	GTAC	1 cut(s)	122
CviAII	CATG	1 cut(s)	460
CviJI	RGCY	5 cut(s)	93, 172, 188, 365, 382
CviKI_1	RGCY	5 cut(s)	93, 172, 188, 365, 382
CviQI	GTAC	1 cut(s)	122
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	7 cut(s)	28, 74, 84, 222, 285, 296, 456
DpnII	GATC	7 cut(s)	26, 72, 82, 220, 283, 294, 454
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	235
FaeI	CATG	1 cut(s)	463
FaiI	YATR	1 cut(s)	461
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FatI	CATG	1 cut(s)	459
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	163
FokI	GGATG	3 cut(s)	200, 413, 425
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	1 cut(s)	163
GluI	GCNGC	1 cut(s)	163
GsuI	CTGGAG	2 cut(s)	63, 295
HaeIII	GGCC	2 cut(s)	93, 188
HapII	CCGG	2 cut(s)	63, 207
HgaI	GACGC	2 cut(s)	23, 110
Hin1I	GRCGYC	2 cut(s)	15, 102
Hin1II	CATG	1 cut(s)	463
HinfI	GANTC	2 cut(s)	57, 246
HpaII	CCGG	2 cut(s)	63, 207
Hpy166II	GTNNAC	2 cut(s)	34, 179
Hpy188I	TCNGA	3 cut(s)	72, 283, 467
Hpy188III	TCNNGA	5 cut(s)	43, 80, 130, 224, 260
Hpy8I	GTNNAC	2 cut(s)	34, 179
Hpy99I	CGWCG	2 cut(s)	17, 104
HpyAV	CCTTC	4 cut(s)	188, 318, 337, 356
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	173
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	2 cut(s)	15, 102
Hsp92II	CATG	1 cut(s)	463
Kzo9I	GATC	7 cut(s)	26, 72, 82, 220, 283, 294, 454
LpnPI	CCDG	9 cut(s)	75, 76, 93, 220, 259, 364, 402, 407, 425
Lsp1109I	GCAGC	1 cut(s)	149
MaeII	ACGT	1 cut(s)	120
MalI	GATC	7 cut(s)	28, 74, 84, 222, 285, 296, 456
MbiI	CCGCTC	3 cut(s)	316, 335, 354
MboI	GATC	7 cut(s)	26, 72, 82, 220, 283, 294, 454
MboII	GAAGA	2 cut(s)	99, 445
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	3 cut(s)	144, 174, 255
MlyI	GAGTC	2 cut(s)	51, 255
MnlI	CCTC	9 cut(s)	28, 87, 115, 178, 184, 220, 227, 260, 409
MspI	CCGG	2 cut(s)	63, 207
NdeII	GATC	7 cut(s)	26, 72, 82, 220, 283, 294, 454
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	4 cut(s)	53, 74, 211, 426
NmeAIII	GCCGAG	4 cut(s)	214, 299, 318, 337
PcsI	WCGNNNNNNNCGW	2 cut(s)	91, 126
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	2 cut(s)	51, 254
PpsI	GAGTC	2 cut(s)	51, 254
PshAI	GACNNNNGTC	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	174
PspN4I	GGNNCC	4 cut(s)	53, 74, 211, 426
PsuI	RGATCY	1 cut(s)	72
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SacI	GAGCTC	1 cut(s)	174
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	7 cut(s)	26, 72, 82, 220, 283, 294, 454
SchI	GAGTC	2 cut(s)	51, 255
SduI	GDGCHC	3 cut(s)	144, 174, 255
SetI	ASST	8 cut(s)	123, 174, 199, 271, 310, 329, 348, 367
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SsiI	CCGC	4 cut(s)	49, 314, 333, 352
SstI	GAGCTC	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	4 cut(s)	129, 156, 219, 249
TaqII	GACCGA	1 cut(s)	19
TscAI	CASTG	2 cut(s)	181, 396
TseI	GCWGC	1 cut(s)	162
TspDTI	ATGAA	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	181, 396
XmiI	GTMKAC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.