Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007546.1

Orthogroup ID

OG0003705

Physical Location & Seq

Genomic Coordinates Reverse (-)

47564 .. 48717

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007546.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgatggaaaatgtcatattagagtgtgaaatgataaaaatgtcacctagtttctcacttgataataagatcgttcaggtcgatcaggcatggtacgacgcctctttgtctcttgatgtacttgtcgagataggagaacgtgacgttgaaattgaccgccgcttagcgctcggcgaacccgaggcagatgaaggcgtgcttgctggtgccatcctcgatcttgaggacgaagtagcgcgacgagtcgagcacggtcttgacgggggtcactggagtttggatctccagtcggatctctcaccggtccctgcacaaccttctccgctctcggcgagcttctcgtcgctactggcaacatcactgactttgatgggtgccgctcgtacgttaaccgaaaagtttgggaagcatgatttggttaaagccaaacaggctatgcggagtcttgtggcgccaatgagaatggatgatggaatggatgagggacaagcaccaaagaagaagcaggagttgattgatagccccgtgctaactgaacgtgataaggcaaagctagataggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0042221 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran ABC_tran_Xtn

Protein Analysis

187

Amino Acids

20.56

Weight (kDa)

4.59

Isoelectric Point (pI)

56.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003705)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0395861 RchiOBHm_Chr4g0402741 RchiOBHm_Chr4g0427411
rosa_laevigata	RLG00000001375 RLG00000007608 RLG00000019404
rosa_multiflora	Rmu_co8450077.1_g000002 Rmu_sc0000370.1_g000029 Rmu_sc0007546.1_g000007 Rmu_sc0007546.1_g000008 Rmu_sc0015240.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305470 Rroxscaffold_5G00338700 Rroxscaffold_5G00338740 Rroxscaffold_7G00201150
rosa_rugosa	Rorug01G0046700 Rorug01G0046800.1 Rorug02G0327100 Rorug02G0507300 Rorug05G0423400 Rorug06G0195500 Rorug06G0377500
rosa_samantha	Rh1CG177600 Rh2BG022900 Rh2BG437800 Rh2DG447600 Rh3BG319700 Rh4BG279700 Rh4DG277100 Rh5AG263400 Rh5AG375700 Rh5BG555500 Rh5DG247000 Rh6BG298600 Rh7BG214400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	206, 374, 451
AccBSI	CCGCTC	2 cut(s)	325, 380
AccII	CGCG	1 cut(s)	238
AciI	CCGC	5 cut(s)	157, 160, 323, 378, 439
AclWI	GGATC	2 cut(s)	288, 300
AcyI	GRCGYC	2 cut(s)	99, 452
AfaI	GTAC	3 cut(s)	95, 120, 385
AfeI	AGCGCT	1 cut(s)	168
AgeI	ACCGGT	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	2 cut(s)	336, 553
AluI	AGCT	2 cut(s)	336, 553
Alw21I	GWGCWC	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	2 cut(s)	288, 300
Ama87I	CYCGRG	1 cut(s)	179
Aor51HI	AGCGCT	1 cut(s)	168
AsiGI	ACCGGT	1 cut(s)	301
AspLEI	GCGC	3 cut(s)	169, 238, 454
AspS9I	GGNCC	1 cut(s)	304
AsuHPI	GGTGA	2 cut(s)	36, 291
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	304
BanI	GGYRCC	3 cut(s)	206, 374, 451
Bbv12I	GWGCWC	1 cut(s)	252
BccI	CCATC	3 cut(s)	218, 364, 464
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	2 cut(s)	48, 554
BfoI	RGCGCY	2 cut(s)	170, 455
BglI	GCCNNNNNGGC	1 cut(s)	431
BisI	GCNGC	2 cut(s)	160, 378
BlpI	GCTNAGC	1 cut(s)	163
BlsI	GCNGC	2 cut(s)	161, 379
Bme18I	GGWCC	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	4 cut(s)	208, 306, 376, 453
BoxI	GACNNNNGTC	1 cut(s)	264
BpmI	CTGGAG	2 cut(s)	269, 292
Bpu1102I	GCTNAGC	1 cut(s)	163
BpuEI	CTTGAG	1 cut(s)	242
BsaHI	GRCGYC	2 cut(s)	99, 452
BsaJI	CCNNGG	1 cut(s)	180
BsaWI	WCCGGW	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	3 cut(s)	275, 286, 354
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	3 cut(s)	210, 472, 484
BseNI	ACTGG	3 cut(s)	275, 286, 354
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	238
BshNI	GGYRCC	3 cut(s)	206, 374, 451
BshTI	ACCGGT	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	302
BsiWI	CGTACG	1 cut(s)	383
BslFI	GGGAC	2 cut(s)	290, 498
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	2 cut(s)	290, 498
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	5 cut(s)	69, 82, 217, 280, 292
Bsp1720I	GCTNAGC	1 cut(s)	163
BspACI	CCGC	5 cut(s)	157, 160, 323, 378, 439
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	4 cut(s)	208, 306, 376, 453
BspPI	GGATC	2 cut(s)	288, 300
BspT107I	GGYRCC	3 cut(s)	206, 374, 451
BsrBI	CCGCTC	2 cut(s)	325, 380
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	3 cut(s)	275, 286, 354
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	5 cut(s)	69, 82, 217, 280, 292
BssNI	GRCGYC	2 cut(s)	99, 452
Bst4CI	ACNGT	1 cut(s)	254
BstACI	GRCGYC	2 cut(s)	99, 452
BstC8I	GCNNGC	3 cut(s)	197, 201, 334
BstDEI	CTNAG	1 cut(s)	163
BstF5I	GGATG	3 cut(s)	210, 472, 484
BstFNI	CGCG	1 cut(s)	238
BstH2I	RGCGCY	2 cut(s)	170, 455
BstHHI	GCGC	3 cut(s)	169, 238, 454
BstKTI	GATC	5 cut(s)	72, 85, 220, 283, 295
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	5 cut(s)	69, 82, 217, 280, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstPAI	GACNNNNGTC	1 cut(s)	264
BstUI	CGCG	1 cut(s)	238
BstX2I	RGATCY	2 cut(s)	280, 292
BstYI	RGATCY	2 cut(s)	280, 292
BtsCI	GGATG	3 cut(s)	210, 472, 484
BtsIMutI	CAGTG	2 cut(s)	268, 359
Cac8I	GCNNGC	3 cut(s)	197, 201, 334
CfoI	GCGC	3 cut(s)	169, 238, 454
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	304
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	3 cut(s)	94, 119, 384
CspAI	ACCGGT	1 cut(s)	301
CviAII	CATG	2 cut(s)	90, 410
CviJI	RGCY	5 cut(s)	336, 425, 434, 522, 553
CviKI_1	RGCY	5 cut(s)	336, 425, 434, 522, 553
CviQI	GTAC	3 cut(s)	94, 119, 384
DdeI	CTNAG	1 cut(s)	163
DinI	GGCGCC	1 cut(s)	453
DpnI	GATC	5 cut(s)	71, 84, 219, 282, 294
DpnII	GATC	5 cut(s)	69, 82, 217, 280, 292
Eco47I	GGWCC	1 cut(s)	304
Eco47III	AGCGCT	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	179
EgeI	GGCGCC	1 cut(s)	453
EheI	GGCGCC	1 cut(s)	453
FaeI	CATG	2 cut(s)	93, 413
FaiI	YATR	4 cut(s)	17, 91, 411, 437
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
FaqI	GGGAC	2 cut(s)	290, 498
FatI	CATG	2 cut(s)	89, 409
Fnu4HI	GCNGC	2 cut(s)	160, 378
FokI	GGATG	3 cut(s)	197, 479, 491
Fsp4HI	GCNGC	2 cut(s)	160, 378
FspBI	CTAG	2 cut(s)	48, 554
GlaI	GCGC	3 cut(s)	168, 237, 453
GluI	GCNGC	2 cut(s)	160, 378
GsuI	CTGGAG	2 cut(s)	269, 292
HaeII	RGCGCY	2 cut(s)	170, 455
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	3 cut(s)	169, 238, 454
Hin1I	GRCGYC	2 cut(s)	99, 452
Hin1II	CATG	2 cut(s)	93, 413
Hin6I	GCGC	3 cut(s)	167, 236, 452
HinP1I	GCGC	3 cut(s)	167, 236, 452
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	2 cut(s)	243, 442
HpaI	GTTAAC	1 cut(s)	390
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	2 cut(s)	36, 291
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	4 cut(s)	113, 127, 221, 257
Hpy8I	GTNNAC	1 cut(s)	390
Hpy99I	CGWCG	3 cut(s)	101, 243, 346
HpyAV	CCTTC	2 cut(s)	185, 327
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	4 cut(s)	139, 144, 386, 538
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	1 cut(s)	163
HpySE526I	ACGT	4 cut(s)	139, 144, 386, 538
Hsp92I	GRCGYC	2 cut(s)	99, 452
Hsp92II	CATG	2 cut(s)	93, 413
HspAI	GCGC	3 cut(s)	167, 236, 452
KasI	GGCGCC	1 cut(s)	451
KspAI	GTTAAC	1 cut(s)	390
Kzo9I	GATC	5 cut(s)	69, 82, 217, 280, 292
MaeI	CTAG	2 cut(s)	48, 554
MaeII	ACGT	4 cut(s)	139, 144, 386, 538
MaeIII	GTNAC	3 cut(s)	42, 140, 266
MalI	GATC	5 cut(s)	71, 84, 219, 282, 294
MbiI	CCGCTC	2 cut(s)	325, 380
MboI	GATC	5 cut(s)	69, 82, 217, 280, 292
MboII	GAAGA	1 cut(s)	511
MflI	RGATCY	2 cut(s)	280, 292
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	1 cut(s)	150
Mly113I	GGCGCC	1 cut(s)	452
MlyI	GAGTC	2 cut(s)	252, 451
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	5 cut(s)	112, 175, 217, 224, 475
MseI	TTAA	2 cut(s)	389, 420
MspI	CCGG	1 cut(s)	302
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	1 cut(s)	431
NarI	GGCGCC	1 cut(s)	452
NdeII	GATC	5 cut(s)	69, 82, 217, 280, 292
NlaIII	CATG	2 cut(s)	93, 413
NlaIV	GGNNCC	4 cut(s)	208, 306, 376, 453
NmeAIII	GCCGAG	2 cut(s)	150, 308
NmuCI	GTSAC	3 cut(s)	42, 140, 266
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 177
Pfl23II	CGTACG	1 cut(s)	383
PinAI	ACCGGT	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	161, 379
PleI	GAGTC	2 cut(s)	251, 450
PluTI	GGCGCC	1 cut(s)	455
PpsI	GAGTC	2 cut(s)	251, 450
PshAI	GACNNNNGTC	1 cut(s)	264
PspLI	CGTACG	1 cut(s)	383
PspN4I	GGNNCC	4 cut(s)	208, 306, 376, 453
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	2 cut(s)	280, 292
RsaI	GTAC	3 cut(s)	95, 120, 385
RsaNI	GTAC	3 cut(s)	94, 119, 384
SaqAI	TTAA	2 cut(s)	389, 420
SatI	GCNGC	2 cut(s)	160, 378
Sau3AI	GATC	5 cut(s)	69, 82, 217, 280, 292
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	2 cut(s)	252, 451
SduI	GDGCHC	1 cut(s)	252
SfoI	GGCGCC	1 cut(s)	453
SinI	GGWCC	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	150
SsiI	CCGC	5 cut(s)	157, 160, 323, 378, 439
SspDI	GGCGCC	1 cut(s)	451
SspMI	CTAG	2 cut(s)	48, 554
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	4 cut(s)	142, 147, 389, 541
TaqI	TCGA	4 cut(s)	81, 126, 216, 246
TasI	AATT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	118
TauI	GCSGC	2 cut(s)	162, 380
Tru1I	TTAA	2 cut(s)	389, 420
Tru9I	TTAA	2 cut(s)	389, 420
TscAI	CASTG	2 cut(s)	275, 366
TseFI	GTSAC	3 cut(s)	42, 140, 266
Tsp45I	GTSAC	3 cut(s)	42, 140, 266
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	275, 366
VpaK11BI	GGWCC	1 cut(s)	304
XspI	CTAG	2 cut(s)	48, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.