Rh5BG555500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003705
Physical Location & Seq
Forward (+)
88344438 .. 88344668
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG555500.1

Sequence Viewer

Length: 231 bp
ATGATCTGTGAGTGTGACGTTGAAATAGAACGACTCGTTGCGCTCAACGAACTGGAGGCTGATGAAGGCGTGCTTGCCGGTGCCGTCCTCGATCTTAAGGACGAAGAAGTGCGACGAGTACAGCACGGTCTCGACGGAGGTCGTTGGAGTTTGGATCCTCTAGTCGGATCTCGCGCTGGTCCTTGCAAGACACTACCCGGAGCTGACTCGTCCAGATCTTGTCAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.15

Weight (kDa)

4.46

Isoelectric Point (pI)

60.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 80
AccII CGCG 1 cut(s) 174
AclWI GGATC 3 cut(s) 149, 162, 175
AfaI GTAC 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 164
AflII CTTAAG 1 cut(s) 95
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 3 cut(s) 149, 162, 175
AspLEI GCGC 2 cut(s) 43, 176
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 198
AvaII GGWCC 1 cut(s) 179
BamHI GGATCC 1 cut(s) 154
BanI GGYRCC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 68
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 161
BfrI CTTAAG 1 cut(s) 95
BglII AGATCT 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 2 cut(s) 82, 156
BmrFI CCNGG 1 cut(s) 198
BoxI GACNNNNGTC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 164
BseNI ACTGG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 80
BsiSI CCGG 2 cut(s) 78, 198
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 5 cut(s) 3, 91, 154, 167, 215
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 82, 156
BspPI GGATC 3 cut(s) 149, 162, 175
BspT107I GGYRCC 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 77
BssMI GATC 5 cut(s) 3, 91, 154, 167, 215
Bst4CI ACNGT 1 cut(s) 128
BstAFI CTTAAG 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 71, 75
BstFNI CGCG 1 cut(s) 174
BstHHI GCGC 2 cut(s) 43, 176
BstKTI GATC 5 cut(s) 6, 94, 157, 170, 218
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 5 cut(s) 3, 91, 154, 167, 215
BstPAI GACNNNNGTC 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 196
BstUI CGCG 1 cut(s) 174
BstX2I RGATCY 3 cut(s) 154, 167, 215
BstYI RGATCY 3 cut(s) 154, 167, 215
Cac8I GCNNGC 2 cut(s) 71, 75
CfoI GCGC 2 cut(s) 43, 176
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 119
CviJI RGCY 2 cut(s) 59, 203
CviKI_1 RGCY 2 cut(s) 59, 203
CviQI GTAC 1 cut(s) 119
DpnI GATC 5 cut(s) 5, 93, 156, 169, 217
DpnII GATC 5 cut(s) 3, 91, 154, 167, 215
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 179
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FspBI CTAG 1 cut(s) 161
GlaI GCGC 2 cut(s) 42, 175
GsuI CTGGAG 1 cut(s) 74
HapII CCGG 2 cut(s) 78, 198
HhaI GCGC 2 cut(s) 43, 176
Hin6I GCGC 2 cut(s) 41, 174
HinP1I GCGC 2 cut(s) 41, 174
HinfI GANTC 2 cut(s) 33, 206
HpaII CCGG 2 cut(s) 78, 198
Hpy188I TCNGA 2 cut(s) 167, 225
Hpy188III TCNNGA 2 cut(s) 131, 213
Hpy99I CGWCG 2 cut(s) 117, 137
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 18
HspAI GCGC 2 cut(s) 41, 174
Kzo9I GATC 5 cut(s) 3, 91, 154, 167, 215
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 5 cut(s) 38, 91, 162, 211, 226
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 14
MalI GATC 5 cut(s) 5, 93, 156, 169, 217
MboI GATC 5 cut(s) 3, 91, 154, 167, 215
MboII GAAGA 1 cut(s) 116
MflI RGATCY 3 cut(s) 154, 167, 215
MlyI GAGTC 2 cut(s) 27, 200
MmeI TCCRAC 2 cut(s) 125, 145
MnlI CCTC 4 cut(s) 49, 98, 131, 168
MseI TTAA 1 cut(s) 96
MspCI CTTAAG 1 cut(s) 95
MspI CCGG 2 cut(s) 78, 198
MspR9I CCNGG 1 cut(s) 198
MvnI CGCG 1 cut(s) 174
NciI CCSGG 1 cut(s) 198
NdeII GATC 5 cut(s) 3, 91, 154, 167, 215
NlaIV GGNNCC 2 cut(s) 82, 156
NmuCI GTSAC 1 cut(s) 14
PleI GAGTC 2 cut(s) 27, 200
PpsI GAGTC 2 cut(s) 27, 200
PshAI GACNNNNGTC 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 82, 156
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 3 cut(s) 154, 167, 215
RsaI GTAC 1 cut(s) 120
RsaNI GTAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 5 cut(s) 3, 91, 154, 167, 215
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 2 cut(s) 27, 200
ScrFI CCNGG 1 cut(s) 198
SetI ASST 3 cut(s) 21, 142, 205
SinI GGWCC 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 21
TaqI TCGA 2 cut(s) 90, 132
TatI WGTACW 1 cut(s) 118
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 78
TspGWI ACGGA 1 cut(s) 150
Vha464I CTTAAG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 179
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.