AT2G30505

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016133
Physical Location & Seq
Reverse (-)
13000670 .. 13002574
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30505.1

Sequence Viewer

Length: 966 bp
ATGTCGGAGCTGCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTAGGAGGGATTCAGGATTTGGAGATCCTGCATTGGTATTCCCTGAGTTTGCTGCCAAACAATGCGGTCTCGAAAAAGTTATAGAGGAAGAAGGAGAAGGGGAAGATAGTAGCTATGGCAAAGGTTCTTTTGATCTGAGTTCAAGATTCTCAAGCCCTTCCATTTCTCGAAACAGGTTTGATGATGTTGAAAACCCGAAAAAGGCTTCGTCTTTTAAGCGGCCTCCTTCTGCGTCGAGACTGTCTGGCTTTCGAGAGGAAGAAGAGGCCGATCGGAGTAGAAAATCGGGTTCCTTTGTGGATCATATCGGTCAGGAGGACAAGAGAATATGCGCCTCTGGATGTTTCAGAAAATGCTGCGCTTGCACCTGCATGTTTGTTTCTGTTGTCCTTATAATCGTCTTGTTGGTAGGATTGTCTGCAAACTCTTCAATCAAATCTATACTACCTCAGGTGCTTGTCACAAACCTCAAGTTCTCGAGATTGGATATCGCCAAATCATCGACAGATCTTCTGATGAATGCGAACTTGAACACGGTGCTTCAGCTCTCTAATAATAATGACAAGACGGTGCTATATTACAGTCCTATGAAAGCTGATATATCTTCTGAGAACATAAACCTCGGAAAGAAGACACTTTCTGGATTCAAGCAGGACCCGGGAAATGTTACCTCCTTGAAGATCCTCACAAGACTCAGAAAATCCAAAGTGTATGATGTTGATGCTACATTGCTGACAAACAAAGAGAAGACGCTTGAAGCTTTGGTTGATGTGTTCTTGAGAGGGAAACTGAGTGTTGATTGGTTGGGATTTAAGGTTCATATACCAATTGTTATTGCGTGCGAGAGTGTGAAGCAGAGTGATGTGATAAATGGTCTCAAACCAGCGTGCGATGTTCGAATCTTTTCCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

321

Amino Acids

35.2

Weight (kDa)

8.49

Isoelectric Point (pI)

59.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016133)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30505
fragaria_vesca FvH4_3g40830
malus_domestica MD03G1049700.v1.1 MD11G1051900.v1.1
prunus_persica Prupe.6G039500_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0073561
rosa_laevigata RLG00000036395
rosa_multiflora Rmu_ssc0000226.1_g000002
rosa_roxburghii Rroxscaffold_1G00007720
rosa_rugosa Rorug05G0424800
rosa_samantha Rh5AG481900 Rh5BG502600 Rh5CG525700 Rh5DG514800
rosa_wichuraiana Rw5G044760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
AarI CACCTGC 1 cut(s) 428
Acc36I ACCTGC 1 cut(s) 428
AciI CCGC 2 cut(s) 117, 271
AclWI GGATC 3 cut(s) 71, 360, 727
AcuI CTGAAG 1 cut(s) 578
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 7 cut(s) 195, 242, 483, 583, 700, 730, 809
AloI GAACNNNNNNTCC 2 cut(s) 852, 884
AluBI AGCT 5 cut(s) 10, 165, 598, 647, 812
AluI AGCT 5 cut(s) 10, 165, 598, 647, 812
Alw26I GTCTC 3 cut(s) 125, 283, 932
AlwI GGATC 3 cut(s) 71, 360, 727
Ama87I CYCGRG 2 cut(s) 529, 709
AoxI GGCC 2 cut(s) 272, 318
ApeKI GCWGC 3 cut(s) 10, 104, 408
Asp700I GAANNNNTTC 1 cut(s) 955
AspA2I CCTAGG 1 cut(s) 53
AspLEI GCGC 2 cut(s) 386, 413
AspS9I GGNCC 1 cut(s) 706
AsuC2I CCSGG 2 cut(s) 710, 711
AsuII TTCGAA 1 cut(s) 949
AvaI CYCGRG 2 cut(s) 529, 709
AvaII GGWCC 1 cut(s) 706
AvrII CCTAGG 1 cut(s) 53
AxyI CCTNAGG 1 cut(s) 501
BbsI GAAGAC 2 cut(s) 689, 806
BbvI GCAGC 2 cut(s) 91, 395
BcnI CCSGG 2 cut(s) 710, 711
BcoDI GTCTC 3 cut(s) 125, 283, 932
BfaI CTAG 1 cut(s) 54
BfuAI ACCTGC 1 cut(s) 428
BglII AGATCT 1 cut(s) 559
BisI GCNGC 4 cut(s) 11, 105, 272, 409
BlnI CCTAGG 1 cut(s) 53
BlsI GCNGC 4 cut(s) 12, 106, 273, 410
Bme1390I CCNGG 2 cut(s) 710, 711
Bme18I GGWCC 1 cut(s) 706
BmeT110I CYCGRG 2 cut(s) 529, 709
BmgT120I GGNCC 1 cut(s) 706
BmiI GGNNCC 2 cut(s) 343, 708
BmrFI CCNGG 2 cut(s) 710, 711
BmsI GCATC 1 cut(s) 763
BpiI GAAGAC 2 cut(s) 689, 806
Bpu14I TTCGAA 1 cut(s) 949
BpuEI CTTGAG 3 cut(s) 187, 506, 850
BpuMI CCSGG 2 cut(s) 710, 711
BsaI GGTCTC 2 cut(s) 125, 932
BsaJI CCNNGG 3 cut(s) 53, 673, 709
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse21I CCTNAGG 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 779
BseDI CCNNGG 3 cut(s) 53, 673, 709
BseGI GGATG 1 cut(s) 398
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMI GCAATG 1 cut(s) 779
BseMII CTCAG 6 cut(s) 87, 179, 515, 651, 760, 833
BseXI GCAGC 2 cut(s) 91, 395
Bsh1285I CGRYCG 1 cut(s) 325
BshFI GGCC 2 cut(s) 274, 320
BsiEI CGRYCG 1 cut(s) 325
BsiHKCI CYCGRG 2 cut(s) 529, 709
BsiSI CCGG 1 cut(s) 710
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 3 cut(s) 125, 283, 932
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 2 cut(s) 274, 320
Bso31I GGTCTC 2 cut(s) 125, 932
BsoBI CYCGRG 2 cut(s) 529, 709
Bsp119I TTCGAA 1 cut(s) 949
Bsp143I GATC 6 cut(s) 76, 184, 322, 352, 559, 732
BspACI CCGC 2 cut(s) 117, 271
BspANI GGCC 2 cut(s) 274, 320
BspCNI CTCAG 6 cut(s) 88, 180, 514, 652, 759, 834
BspLI GGNNCC 2 cut(s) 343, 708
BspMI ACCTGC 1 cut(s) 428
BspPI GGATC 3 cut(s) 71, 360, 727
BspT104I TTCGAA 1 cut(s) 949
BspTNI GGTCTC 2 cut(s) 125, 932
BsrDI GCAATG 1 cut(s) 779
BssECI CCNNGG 3 cut(s) 53, 673, 709
BssMI GATC 6 cut(s) 76, 184, 322, 352, 559, 732
BssT1I CCWWGG 1 cut(s) 53
Bst4CI ACNGT 4 cut(s) 294, 589, 622, 635
Bst6I CTCTTC 2 cut(s) 309, 484
BstBI TTCGAA 1 cut(s) 949
BstC8I GCNNGC 3 cut(s) 415, 892, 940
BstDEI CTNAG 6 cut(s) 96, 188, 501, 660, 746, 842
BstF5I GGATG 1 cut(s) 398
BstHHI GCGC 2 cut(s) 386, 413
BstKTI GATC 6 cut(s) 79, 187, 325, 355, 562, 735
BstMAI GTCTC 3 cut(s) 125, 283, 932
BstMBI GATC 6 cut(s) 76, 184, 322, 352, 559, 732
BstMCI CGRYCG 1 cut(s) 325
BstMWI GCNNNNNNNGC 1 cut(s) 414
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 2 cut(s) 708, 709
BstV1I GCAGC 2 cut(s) 91, 395
BstV2I GAAGAC 2 cut(s) 689, 806
BstX2I RGATCY 3 cut(s) 76, 559, 732
BstYI RGATCY 3 cut(s) 76, 559, 732
Bsu36I CCTNAGG 1 cut(s) 501
BsuRI GGCC 2 cut(s) 274, 320
BtgZI GCGATG 1 cut(s) 957
BtsCI GGATG 1 cut(s) 398
BveI ACCTGC 1 cut(s) 428
Cac8I GCNNGC 3 cut(s) 415, 892, 940
CfoI GCGC 2 cut(s) 386, 413
Cfr13I GGNCC 1 cut(s) 706
Cfr9I CCCGGG 1 cut(s) 709
CseI GACGC 2 cut(s) 273, 811
CviAII CATG 1 cut(s) 424
DdeI CTNAG 6 cut(s) 96, 188, 501, 660, 746, 842
DpnI GATC 6 cut(s) 78, 186, 324, 354, 561, 734
DpnII GATC 6 cut(s) 76, 184, 322, 352, 559, 732
Eam1104I CTCTTC 2 cut(s) 309, 484
EarI CTCTTC 2 cut(s) 309, 484
Eco130I CCWWGG 1 cut(s) 53
Eco31I GGTCTC 2 cut(s) 125, 932
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 706
Eco57I CTGAAG 1 cut(s) 578
Eco81I CCTNAGG 1 cut(s) 501
Eco88I CYCGRG 2 cut(s) 529, 709
EcoO109I RGGNCCY 1 cut(s) 706
EcoRV GATATC 1 cut(s) 541
EcoT14I CCWWGG 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 1 cut(s) 427
FatI CATG 1 cut(s) 423
Fnu4HI GCNGC 4 cut(s) 11, 105, 272, 409
FokI GGATG 1 cut(s) 405
Fsp4HI GCNGC 4 cut(s) 11, 105, 272, 409
FspBI CTAG 1 cut(s) 54
GlaI GCGC 2 cut(s) 385, 412
GluI GCNGC 4 cut(s) 11, 105, 272, 409
HaeIII GGCC 2 cut(s) 274, 320
HapII CCGG 1 cut(s) 710
HgaI GACGC 2 cut(s) 273, 811
HhaI GCGC 2 cut(s) 386, 413
Hin1II CATG 1 cut(s) 427
Hin6I GCGC 2 cut(s) 384, 411
HinP1I GCGC 2 cut(s) 384, 411
HindIII AAGCTT 1 cut(s) 810
HinfI GANTC 5 cut(s) 62, 198, 696, 744, 951
HpaII CCGG 1 cut(s) 710
Hpy188I TCNGA 9 cut(s) 7, 189, 327, 401, 567, 661, 677, 749, 961
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 4 cut(s) 137, 143, 219, 288
HpyCH4III ACNGT 4 cut(s) 294, 589, 622, 635
HpyCH4V TGCA 4 cut(s) 83, 417, 423, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 414
HpyF3I CTNAG 6 cut(s) 96, 188, 501, 660, 746, 842
Hsp92II CATG 1 cut(s) 427
HspAI GCGC 2 cut(s) 384, 411
Kzo9I GATC 6 cut(s) 76, 184, 322, 352, 559, 732
LmnI GCTCC 1 cut(s) 7
Lsp1109I GCAGC 2 cut(s) 91, 395
LweI GCATC 1 cut(s) 763
MaeI CTAG 1 cut(s) 54
MaeIII GTNAC 2 cut(s) 511, 718
MalI GATC 6 cut(s) 78, 186, 324, 354, 561, 734
MboI GATC 6 cut(s) 76, 184, 322, 352, 559, 732
MfeI CAATTG 1 cut(s) 879
MflI RGATCY 3 cut(s) 76, 559, 732
MluCI AATT 1 cut(s) 879
MlyI GAGTC 1 cut(s) 738
MroXI GAANNNNTTC 1 cut(s) 955
MseI TTAA 2 cut(s) 267, 864
MslI CAYNNNNRTG 1 cut(s) 422
MspI CCGG 1 cut(s) 710
MspR9I CCNGG 2 cut(s) 710, 711
MunI CAATTG 1 cut(s) 879
Mva1269I GAATGC 1 cut(s) 577
MwoI GCNNNNNNNGC 1 cut(s) 414
NciI CCSGG 2 cut(s) 710, 711
NdeII GATC 6 cut(s) 76, 184, 322, 352, 559, 732
NlaIII CATG 1 cut(s) 427
NlaIV GGNNCC 2 cut(s) 343, 708
NmuCI GTSAC 1 cut(s) 511
NspI RCATGY 1 cut(s) 427
NspV TTCGAA 1 cut(s) 949
PaeR7I CTCGAG 1 cut(s) 529
PaqCI CACCTGC 1 cut(s) 428
PctI GAATGC 1 cut(s) 577
PdmI GAANNNNTTC 1 cut(s) 955
PfeI GAWTC 4 cut(s) 62, 198, 696, 951
PkrI GCNGC 4 cut(s) 12, 106, 273, 410
Ple19I CGATCG 1 cut(s) 325
PleI GAGTC 1 cut(s) 738
PpsI GAGTC 1 cut(s) 738
PpuMI RGGWCCY 1 cut(s) 706
PsiI TTATAA 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 706
PspN4I GGNNCC 2 cut(s) 343, 708
PspPI GGNCC 1 cut(s) 706
PspPPI RGGWCCY 1 cut(s) 706
PsuI RGATCY 3 cut(s) 76, 559, 732
PvuI CGATCG 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 422
SaqAI TTAA 2 cut(s) 267, 864
SatI GCNGC 4 cut(s) 11, 105, 272, 409
Sau3AI GATC 6 cut(s) 76, 184, 322, 352, 559, 732
Sau96I GGNCC 1 cut(s) 706
SchI GAGTC 1 cut(s) 738
ScrFI CCNGG 2 cut(s) 710, 711
SfaNI GCATC 1 cut(s) 763
Sfr274I CTCGAG 1 cut(s) 529
SfuI TTCGAA 1 cut(s) 949
SinI GGWCC 1 cut(s) 706
SlaI CTCGAG 1 cut(s) 529
SmaI CCCGGG 1 cut(s) 711
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 4 cut(s) 202, 521, 529, 829
SmoI CTYRAG 4 cut(s) 202, 521, 529, 829
Sse9I AATT 1 cut(s) 879
SsiI CCGC 2 cut(s) 117, 271
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 708, 709
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 4 cut(s) 294, 589, 622, 635
TaqI TCGA 7 cut(s) 123, 220, 287, 304, 530, 554, 949
TaqII GACCGA 1 cut(s) 350
TasI AATT 1 cut(s) 879
TauI GCSGC 1 cut(s) 274
TfiI GAWTC 4 cut(s) 62, 198, 696, 951
Tru1I TTAA 2 cut(s) 267, 864
Tru9I TTAA 2 cut(s) 267, 864
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 3 cut(s) 10, 104, 408
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 3 cut(s) 584, 656, 860
TspMI CCCGGG 1 cut(s) 709
VpaK11BI GGWCC 1 cut(s) 706
XceI RCATGY 1 cut(s) 427
XhoI CTCGAG 1 cut(s) 529
XmaI CCCGGG 1 cut(s) 709
XmaJI CCTAGG 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 955
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.